RNA id: XM_021566494.2


Basic Information

Item Value
RNA id XM_021566494.2
length 2311
RNA type mRNA
GC content 0.48
exon number 7
gene id LOC110492292
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 53607410 ~ 53617096 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCATGCTTGCGGTTGTTGCTCCCGAGCAGACGGAAAGACCTTCGCGGAGAGGTGGTATTGATCACCGGGGGTGGACGGGGCATCGGTCGGCATTTGGGGAAAGAGTTTGCAAAACATGGAGCAAAAAAGGCACACAAACACAGGTGTTTCCTCAGTCCCTGTGCTTTACAATGGGGGCGATGACAGGTTGGGTGGATGGCTCCGTGGAACTACAATGATGTTGCCTTTTTAACCTCAACTCTAGCTCCTCTGGGTCCCCAGTGACTGTTCGATAAAGTTCACTGACAGGGTAGTGGAATGCACAGTTCAGATTGATCCTGTGGGGCCGCACTGAGAAGTGTCTGATGGAGACCTGCAAGGAGATCTCTCTCACCACCGGAGCCGAGTGCCATTACTTCCTGTGTGACGTGGCCAATCGGGAGGAGGTGTACAAGCAGGCCAAGGTGGTCCGAGAGAAGGTGGGCGACGTCACCATTCTAGTGAATAACGCTGCAGTGGTTCATGGGAAGAGTCTGATGGCCAGTGACGATGATGCTCTGATGAAGACTCAACACATCAACACGCTGGGCCAGTTCTGGACCACCAAAGCCTTCCTACCCCGCATGCTAGAGCTTTGCCATGGCCATGTGGTGTGTATCAACTCCATCCTGTCCCTGTCCTCCATCCCGGGGGCCATAGATTATTGCACCTCCAAGGCCTCGTCCCTGGCGTTCATGGAGAGCCTCACCCTGGGCCTGCTGGACTGCCCTGGGGTCGGCTGCACCACCGTGCTCCCCTTCCACACCAACACTGACATGTTCCAGGGCATGAGAGTCAGGTTCCCTCAGCTCTTCCCCCCGCTAAATCCTGAGCTGGTGGCCCAGCGGACGGTGGACGCAGTCCGGACCAACACTCCGTTCATCTACTTACCTTGGACCATGCATGCTCTCGTTATTCTCAAGAGCTTCCTGCCTCAGGCAGCTCTGGAGGAGATCCAGCGTTTCTCAGGGTGCTACACCTGCATGGACACCTTCAAGGGACGTACATAAGAACGGAGAGGCTACACACGAGTAGTGAGCATCAGAAGCACGAACATTGTGGCTTGGCACCAAGAACCGCACAACAGCTTCCTATCAAATGAGTGGAAGTATCTCCAAGACAACAGAGGCCGTAGGAACTATGGGTACTTGGGGTCACAGTGCCCTGATGGTGCAAGAAGAGATTTGCTGTGGAATCTTGAATTGAATAGTGGTGTTTGGGTTGCCAGATTGGCTGGCCCCAAACTGATTTATATGCTGCTTGGAGTTGGTTGGTGTTTCCTCCAAAGCCTTTCAGTTTGGGATCATGGACTAAGCACCAGATGGACTGGTATTCAGAACTGATCAAGCCTTACCACTGTGGTAAACTTCCCATCTGTCTTACTAATGATACCATTACTAATTTGAAAATGCACAGAGATTAGGTTGCATGGATTGTACTCAGTATGTTAACAAATGAGTAACTTCTGGTAGTTGCATTTCATTTGCGACTTTTTGGAGTTTTTGTGTTAAGAAAAAACTGGTGTTAAATCTGTATTCAATAGTCATATTTTTGGGATTTACCACTTGACAGTATTGTGAATAtgctgttttgtgtgtgtgtgtgtgcgcagatccagtcttttgatttttttttttattgtctgCTAAAGACTCCAGCCTTCTCATGGTCAACATTCCTGTGCTGCAGCCCTGCCAATTGTGAGCTCATTGTTCGTTTAAGGGTTGTCATAACACTCTCTGCTCCATAGGAAAGTTTACCGGAGAAGTTCCTTCCATTTGAAGAACCATAGAAATGGTTTCAGGGGGACACGGGCAATACAATCAACTTTCTCAGATTCATCATTCATTTGACACATGGGATAACATTCATTTGATCCTATACTGTGCCTACTGAACACACTTGTTGGTCCCCTCTTTATCTGTCCCTCTCGGCTCTGTCTTTTAATCTTCTTTAGTATGGTCATCCATCTGGAGCACAGACAGCTGGAGAATCATACCTGGCCTGGTGGGCTCTATTGTCTAATATCAGTTTTCCCACATTATGTTGAACTTCGGGTTATCTAGGGTTACGGTGGTTATGGTTAGCATCTTAAGTAGGTGTAGGTATTGAACATTAAACTTGCTGTATCTTGATCAAAGAATTCCTGAATGGGAGAAAGTTTTGATAAAACAAACTCACTTAGACACATTTAGTGCACAAAAGCAAGGGAGGCACAATCATACTACTCTGGACAATAAAATATAACAGTGATTATTTGTTTTAGACCAGAAATGTTTCAGAATGTAATCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1585821 lncRNA downstream 7645 53598077 ~ 53599765 (-) True G1388480
TU1585864 lncRNA downstream 38235 53566411 ~ 53569175 (-) False G1388521
TU1585865 lncRNA downstream 39179 53567871 ~ 53568231 (-) True G1388521
TU1585823 lncRNA downstream 87539 53519349 ~ 53519871 (-) True G1388482
TU1585822 lncRNA downstream 88150 53518199 ~ 53519260 (-) True G1388481
TU1585877 lncRNA upstream 53183 53669718 ~ 53671690 (-) True G1388532
TU1585924 lncRNA upstream 67383 53683918 ~ 53684208 (-) True G1388578
TU1585929 lncRNA upstream 86465 53703000 ~ 53703266 (-) True G1388583
TU1585944 lncRNA upstream 100205 53716740 ~ 53717064 (-) True LOC110491101
TU1585948 lncRNA upstream 104148 53720683 ~ 53721152 (-) True G1388597
LOC110491099 mRNA downstream 167149 53438992 ~ 53440261 (-) True LOC110491099
XM_021566483.2 mRNA downstream 230418 53326457 ~ 53376992 (-) True LOC110492286
XM_021566480.2 mRNA downstream 257951 53324324 ~ 53349459 (-) False LOC110492286
XM_036947246.1 mRNA downstream 257951 53326457 ~ 53349459 (-) False LOC110492286
XM_021566481.2 mRNA downstream 257956 53326457 ~ 53349454 (-) False LOC110492286
XM_021566492.2 mRNA upstream 998 53617533 ~ 53633437 (-) True LOC110492291
XM_036947260.1 mRNA upstream 23335 53639870 ~ 53655680 (-) False LOC110492293
XM_036947259.1 mRNA upstream 23335 53639870 ~ 53657572 (-) False LOC110492293
XM_036947255.1 mRNA upstream 23335 53639870 ~ 53660652 (-) False LOC110492293
XM_036947256.1 mRNA upstream 23335 53639870 ~ 53666840 (-) False LOC110492293
TU1585503 other downstream 574489 53031932 ~ 53032921 (-) True G1388236
TU1585247 other downstream 1035103 52571710 ~ 52572307 (-) True LOC110492250
TU1585179 other downstream 1178651 52418876 ~ 52428759 (-) True spen
TU1583828 other downstream 1617415 51983134 ~ 51989995 (-) True LOC110492226
TU1582837 other downstream 2492345 51113403 ~ 51115065 (-) True dffb
TU1585952 other upstream 113802 53730337 ~ 53732915 (-) True LOC110492299
TU1587231 other upstream 928193 54544728 ~ 54545243 (-) True G1389763
TU1587517 other upstream 1368283 54984818 ~ 54986263 (-) True G1390030
TU1588497 other upstream 2207624 55824159 ~ 55826631 (-) True LOC110492352
TU1589255 other upstream 2447968 56064503 ~ 56064862 (-) True G1391586

Expression Profile