RNA id: XM_036947255.1


Basic Information

Item Value
RNA id XM_036947255.1
length 5037
RNA type mRNA
GC content 0.53
exon number 27
gene id LOC110492293
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 53639870 ~ 53666843 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggatgcacctgagctcaatttcgagtctcatagcaaagagtctgaatacttatTGCCTATGTCCAACATGGCCTCtaagatggaggaggaagaggaaggtatGAAGTTTGACTTTGACAACAGTGACGAAGAGTGCAGTACGACACCAGCGAACTCTGTCTCTACCATGGCCAAGGGCTTTGAAGCCACTGTGATGGCGGGACTTGCATCAAAAAGGAACACAATGGGCCCTAGTTCTGCCCAAGACCCAACAGTAAAGCCAAGGCTCAATGGATTGCCGTCTGCTGGAAAGGAGGACCAGAGCATGCACTCACTCCCTCATTCCAATAGCTCAGAGATGGCTGGAAGAAGGTCTCCTGAGGGCCGCTCTGAGCTGGGACTGTCAGGAGACACAGAGGGCTCTGGGAGAAGAAATAGCATTTATGAAGCAGGATCTATGAATGAGTGCTACTACACCCCTATCTTAAAGGCTGACCACATAGACACTCAGACAGGGAAACCTCCCCCTATTCTTGATGTAGGAGGTCCAGGTGATGCAGCAAGTCCTGAAAATGAAAATGTGTCTAGTCCGGAGGGCCTGCAAAGTCCAGATGGTCTGGCCTGCACAGACAGCCCACCCAGCCCCACCAGTCCCGATAACGTCATGACCGATCCAACCCTCCGCCATGACATGACCAACTCGACCAGCCCTGATGACATCATCATGACTAGTCCAGAGGCCATCTTTAGGACCAGTCGTCCAGAGGTCATCTATGATGACGTGCCCTGTGagagcctcctctctcctctggaaGATGACATCTACGAGGACGTCCAGAGGCCAGAAAGCCATCATGGCACCAACAACGGCTGGAGCGACAGTGAGTTTGAGAGCTATGATGAGCAGTCAGACAGCGAGACCAAAATACCCACTGTTGCCCGAAGCAGTAGTAAGCTTTCTCAGGACATGTGGCGACTGAAAGAGCGCTGTGCCAAGACCAAGCAGGATCTGGCCATGCGCAGCTGTGACTTCAAGGTCCAGATGCTGATGAAAGCAGCGAGAAATGGCACCAAGGACGGACTGGAAAAGACAAAGTTAGCTATGATGCGTAAAGTCTCTTTCCTGCAGAAAAAAGAAACCACGGAGGAGAGTGATGATGACGCTGGTTATCTGGACGTGATGGTGTCTGAAGTGAAGCACCCACCGCCCCAGCTGAGCCCTATGCCAAAGGGGCTTAGCACCCAACAGATTATCAGACGCCACATCGTTGGTTCCATTGTACAAAGTGAGAGGAGTTATGTGGACTCTCTCAAGAGAATCTTAGTGGAGTACCAGAAGCCCTTGCTTGAGCCAGAGGCCCGGATCCTGAGCGATAAGAAGGTGCGGCCCATATTTTACCGGCTGCGGGAGATCCTGCAGTGCCACTCAATGTTCCAAATCGCCCTGGCATCCCGTGTGGCCGAGTGGGACCTCAGTGAGAAGATCGGAGACCTCTTTGTGGCCTCGTTTTCCAAGTCAATGGTACTAGACGTGTACAGCGACTACGTCAACAACTTCACTAACGCCATGGCGCTCATCAAGAAAGCCTGCATTTCCAAGCCAGCTTTCCTGGAGTTTCTCAAGAAGAAGCAAGTGTCAAGTCCTGACAGAATCACTCTTTATGGCCTTATGGTTAAACCAATCCAGCGCTTCCCTCAGTTCATCCTGCTGCTACAGgaCATGCTGAAGAACACTCCCCGGGCCCACCCTGACCGCCTGCCCCTGCAGTTGGCCCTCACTGAGCTGGAGACGTTGGCCGAGAGGCTGAACGAGCAGAAACGAGTCGCTGACCAGGTCGCTGAAATCCAGCAGCTGGCACGCAGCATTGGTGACCGTCAACTGAGCAAgCTCTTGAACTCAGACCAGAGGCAGCTGATACTGTGTGAGGTACTGATTGAGACAGTGTATGGGGAGAAAGGACAGGTCCTTAAGTCCAAGGAGCGCAAAGTTTTCCTGCTGAACGACACCCTCATCTGTGCAAACATCAACGTCAAGGGTCCCCCTGATATCAGCAGTCTAGTTCCCATTGGTCCTAAATACACAGTGAAGTGGAGTGCCCCCTTGCTGCAGACGCAGGTAGTAGAGGTGGGACAGGAGAGCTTCCAGAGCAAAGATACTGGGAAACGGCCAAACGTTGCcaatgttccagGTAAAGTGTTCCTGGGCCCTCCCAGACTGTACCAGGAGCTGGAGGAGCTACAACACGACCTGTATGTGGTTGAAAACATCACCCTGCTGGTGGGGACTTTACAAGGCACCTACCAGAACCTGAACACAACAGTAGGGCAGGACTGGTGCCTTGCACTGCAGAGGCTCATCCACATCAAAGATGAACAGATCCAGTGTGCCAACAAGTGCCGCCTGCGGCTGGCTGTGCCAGGCAAGCCTGACAAATCTGGACGACCGGTCAGTTTCATGGTGGTTTTCAACACTCCCAGTCCCCTCAGCAAGATCTCCTGGGTCAACCGTCTACACCTCGCCAAGATAGCCAAGAGGGAAGAGAACACGCCAGGCTGGGTGTTTGCAGAGGATGATGGGAAGACTAGACATCCATTTTGGTGTCCCCTGCTAGCCTGCCGACTTCCCATCTTCTCCTCCAAAACACAAGACCAAAAGCTGGAGACGGCCCTTCACAACCCGGTCCAATGTGCCCTGCTGGCATTCTCTGCAGCCAGCACCTCTCTGCCGCAGGGCTACCTTTGGGTGGCCAGTGGAGGTGACCGCAACCATGGTCAAGTGGAAATCTTCTCTCTGAACCGCTCCATGCCGCGCATGGTCAAGTCCATCCAGATGGGGGCGCCAGTCCTGTGTCTGGATCACGTGATGGAGCCTTGTCccacagaggaggaaggggagggggaggctgCTGTCAAGAGCACAGCCAGGACTGGCAACACCATCTGTGTAGGCCTGCAGGATGGCAACATTCATGTGTACGGTACCGTGGACACTTCGACCCAGTGCCTGCTGACCTTCTCCAACCCAGACAGTTGTCCAGTTCTGTGCCTGAAACACTCTGCCTCCTTCCTGTTCGCTGGGCTGGGGAATGGAAAAGTGTCTGTTTATGCTCGGAAGAGTGGAGAGGGGCTGTGGGACCCTGAATCGTGCAGGCTGGTGACTGTGGGCAGTGGCCCCATCCGCACCCTCCTAACCCTAGAGAATGCTGTGTGGGCCAGCTGTGCCAACCACGTCACCGTCATCCAGGGCTCCAGCCTCCACACACAGAGTTTTGACGCGCACCCTGAGCCACTGGTCAGTGTGAGTCACATGGTGCGGGCGGGGGGAGGGGTGTGGATGGCCTTCTCCGAGGGCTCATCCATCCGCCTGTTCCACACGGAGACACTGGAGCACCTGCAGGAGATCAACATCTCCACACGCTCCACCTTCCTCAGCCCAGGGCAGCAGGGCAGCGTCCGGGTCACCAGCCTACTCATTTGCCAGGGGCTGCTGTGGGTGGGCACTGCCCAGGGCATCATCGTCACCCTGCCCGTGCCCAAACTGGAGGGTATCCCCAAAATAACAGGTAAAGGGATGACGTCTCTAAACGCTCACTGTGGCCCTGTGGATTTCCTTGTGGTCACCTCCAGCACCCTGTCCCCAGACATGCTCAAACGGGATTCTGTCTGCGAGACTGCCGACCAGGCCAATGGGGgagcgggaggaggagagggtggggaGCGGAGGAATGAATTGTCCCAGGAGTCACTCTCGCAACCTGACTGCTCCTCCCCTCAGGGAGAGCCCACCAAGGCCAAGGGAATGCTGCTTCAGTATCGCCTCCGCTCAACCACCCAGCTGCCCGGCAAGCTGCTGACAGCCGAACCCGACCAGAGCCCATGTGACGCCCCACCGGAGACCCCGGAGCACAGCCCTGAGGACGGCTCTATCTACGAGCTGAGCGAGGACCCTGAGGTATGGGTACGGGGGCAGACCCCGGCCAGGGAGGGGCGTGGGAAGGACAAGGTGACCTCGGCTGCCGTCTTCTCCGGAGGCAGGGGGTTCCGTCGACTTGGGGAGGAGACTATAGCAGCCAATGGGGACCCAGATGAAAGTACGCTCATGGTTTGGCAACTCCCACTAACAGTGAGTCCATGAGGATACAAGACTGATTGGACGAGACGAGAGCTGGCTCCGCAGGCTCCTCCCACTCGCCTGATGTATTGCGTGCTCTATGAAGAAGAGACTATTAAACAATATATATTCAGGATGACTAGACTGTCATGAAGGGCTATAAAGGATGGTACATTCCTCTACCACCTTGGTGGTTGGATTTCTGGATGGAGTCTGAGGGAGTAGTGGTGTGCTGCAAACtgtgtttgacatgtttcaggacctcacacacactcctcccagCAGATGCTTCTTCAGTCTGGCAGATCTAGACCAGCGGGTCTCGTCAAATGGAATTTGAGGAGGTTCACTCCACATAATTTTGCATTTTGCACGTTCTTGAAAAAAGTATAATTGACAAGTGATTGAAAAGTGACAGTTACGAATGTTCGATTTCGATTCTTGTTGTCACTCTAATTGACTCCTATTGCCAGTGTATCACGTGTGTTGCtaacacacaacatgacagctAATGTTAATGTTAGGGTGTATGGGAGCATGTTTATAAAGTACTTCTAAActctttacacccccccccccccccccccccccccaccaccttaAAGGGTACGttcatgtaaagtgttaccagttAACTTAATGTAAAGTAGAGATACAGTACACTGACAGGTATCCCGCTTTTGGGGGGAAAAAGAGAAATCTACATATAACATTTCTCTAAAATCAACTTGATGATCAACATACTGTGTAATAACATCTTGTCCTGTCTTTCTGTGAGGATTTTGTCTAATGTCCTGTTTTCCATTTCAATAATCCAGAAGATGTGAAGAAGAAAAAGCACCAAGGGAAAGAATGTCTCAGCTACTTTATGCTTGACAGGTACTTATTTTGGACAGTGTGTTTACAGTGTGTTACTTTGTTATTTGAATAAAGAGATCATGGTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1585857 lncRNA downstream 13432 53562974 ~ 53626438 (-) True G1388516
TU1585821 lncRNA downstream 40105 53598077 ~ 53599765 (-) True G1388480
TU1585864 lncRNA downstream 70695 53566411 ~ 53569175 (-) False G1388521
TU1585865 lncRNA downstream 71639 53567871 ~ 53568231 (-) True G1388521
TU1585823 lncRNA downstream 119999 53519349 ~ 53519871 (-) True G1388482
TU1585877 lncRNA upstream 9066 53669718 ~ 53671690 (-) True G1388532
TU1585924 lncRNA upstream 23266 53683918 ~ 53684208 (-) True G1388578
TU1585929 lncRNA upstream 42348 53703000 ~ 53703266 (-) True G1388583
TU1585944 lncRNA upstream 56088 53716740 ~ 53717064 (-) True LOC110491101
TU1585948 lncRNA upstream 60031 53720683 ~ 53721152 (-) True G1388597
XM_021566492.2 mRNA downstream 6433 53617533 ~ 53633437 (-) True LOC110492291
XM_021566493.2 mRNA downstream 22774 53607410 ~ 53617096 (-) True LOC110492292
XM_021566494.2 mRNA downstream 23335 53607410 ~ 53616535 (-) False LOC110492292
LOC110491099 mRNA downstream 199609 53438992 ~ 53440261 (-) True LOC110491099
XM_021566483.2 mRNA downstream 262878 53326457 ~ 53376992 (-) True LOC110492286
XM_021566499.2 mRNA upstream 17658 53678310 ~ 53681048 (-) True LOC110492295
XM_021566501.2 mRNA upstream 28520 53689172 ~ 53695764 (-) True LOC110492296
XM_036945786.1 mRNA upstream 51218 53711870 ~ 53727973 (-) False LOC110491101
XM_036947263.1 mRNA upstream 69512 53730164 ~ 53757010 (-) False LOC110492299
XM_036947267.1 mRNA upstream 69512 53730164 ~ 53757010 (-) False LOC110492299
TU1585503 other downstream 606949 53031932 ~ 53032921 (-) True G1388236
TU1585247 other downstream 1067563 52571710 ~ 52572307 (-) True LOC110492250
TU1585179 other downstream 1211111 52418876 ~ 52428759 (-) True spen
TU1583828 other downstream 1649875 51983134 ~ 51989995 (-) True LOC110492226
TU1582837 other downstream 2524805 51113403 ~ 51115065 (-) True dffb
TU1585952 other upstream 69685 53730337 ~ 53732915 (-) True LOC110492299
TU1587231 other upstream 884076 54544728 ~ 54545243 (-) True G1389763
TU1587517 other upstream 1324166 54984818 ~ 54986263 (-) True G1390030
TU1588497 other upstream 2163507 55824159 ~ 55826631 (-) True LOC110492352
TU1589255 other upstream 2403851 56064503 ~ 56064862 (-) True G1391586

Expression Profile