RNA id: XM_036945786.1


Basic Information

Item Value
RNA id XM_036945786.1
length 3574
RNA type mRNA
GC content 0.49
exon number 8
gene id LOC110491101
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 53711870 ~ 53727973 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGGTTGGCCAGAGGAGGCATGGCAGTGCATACACATCGACTTCGCAGagaatgatttatttcagctcttaTTTTATTACATTcGCTGGTTGGTACTGATCCTGACTGGCCACCAGCTGACTGAGGGAACCGGTCTGCAGCTTCCAGGGGACTACTCCATCTCTGGTCTCTTTCCCTTACACAAGTTGGCCCCCTCCAGCTCCAACCTACCAGACCTGGGAGCCTGTAAAGAAGGCAAATTTAATAAACATGGCTATCATTTGATACAAGCCATGAGATTCGCTTTGGAGGAGATCAACAACGGTACCAAAAACCAGCATCTTCTCCCAGGGGTATCACTGGGTTACCAGGCGTATGACACCTGCAATCAACCAGCCAGTGTGCTGGCCACTCTGGCCATGCTGGCCCAACAGTACCAGAGAACTTTAGGGAACAACACAGGTGGTGACCAGAGGGCAGTGGCAGTGATCGGGCCTGATAGTAGCAGTCACACCTTCACCCCTGCTGCAGTGCTGGGCTCTTATCTAGTGCCACAGATCTCCTATGAAGCCTCTAATGAGATGCTGAGTAACAAGCTCCTCTACCCAGCCTTCTTCCGCACCATCCCCAGTGACAAGAACCAGGTGGACGCCATGGTCCAGCTGCTGGTGCGTTTTAACTGGACTTGGATCGTTCTACTGGGCAGCGACGACTCCTACGGCCTCCAGGGCATAGAGAGTCTCTCCCTTCATGCTGCTCACTTTGACATCTGCATCGCCTACCAAGGGGTCATCCCCGAACTCACCTCCGCCAACAACCAGACCATGAGGAACATAGTCAAGAACATTTTGAAGACCAAGGTCAACACTATTGTCGTGTTCTCCAGCAAGACCAAAGTCAGTCAGTTCTTCCCGTTTGTCATAGAGCAGGGTGTAACTGGTAAGGTGTGGATAGGGACAGAAGACTGGTCAGTCACCACTCTAGTGTCGGGAATACCAGGTATTCACACCATTGGGACTGTACTAGGCATCTCCATCAAATACACAGCAATAACTGGGTTTGAGGAGTTTGAAAGCCATGCTGTTCCAAAGTTACATAGTGGCACCTCCAACGGCATGATGGACCTGAGTGTTGAATGTTTGCAAAATACGGACCTCTCCAGCATGGCAGCAGAAAACTTCTCTTTGGGGGACTATGACATCAAATCCTCTTATAATGTTTACAAGGCTGTATATGCTGTGGCACATGCACTGCATCAAGCACTTGGTTGTGGCTTGGATGAATGCCAAAAGTCTGAAGTGCTACCTTGGCAGCTTCTGCCACTGTTAAAGCAGGTGAGATTCTCTGTTGGGAACTCCTCTATTTACTTTAATGAGAACGGAGACCCGCCCACAGGATATGACATCGTGAACTGGATTTGGAGGGGAACAGAGTGGTCTCTCCGTGAGGTGGGCTCTTATACTGCAGACCCCACTGACCTCACAGTGGACCCTGCTCAAATTGAATGGGGTAGTGACGACGGATACACAGGAAAAGAGGTGCCTCCGTCGATATGCTCCCCAGAATGCCCCAAAGGACACAGGAAGCTGCAGACGGGACAACACAAGTGCTGCTTCGACTGCCTGGCCTGTGCTGCTCACAATTTCCTCAACAAGACTGGATCCACCCGGTGCCAGAAGTGTGAGCTTTACCAGTGGTCCCCAGCGGAGAGCGAGGTGTGTCTGGATCGGACGGTCCTAGTGCTGGCCTGGGGCGGTCCCCTGTCTATCGCCCTGCTACTCCTCCTGGCTCTGACCTTGCTCATAACCCTGGGGACAGGGGTCATCTTCCTCCTCAACCTGGGCACCCCTGTGGTCAAGTCGGCCGGCGGGCACACCTGCCTGGTGATGCTTCTAGCCCTAACCGCCGCGGCTGCCAGTGCCCTGTGTCACTTTGGCCTCCCGTCTCAGACTGACTGCCTTCTCAAGCAGCCTCTCTTCGTCTTCAGCTTCACTGTGTGTCTGGCTTGTGTCACCGTCCGTTCCTTCCAGGTAGTGTGCATCTTTAAGCTGTCCTCCAAGCTTCCTCGGGCCTATGATACCTGGGCTAAGAACCATGGGCCTGAAGTCACCGTCCTCGTTGTTTCCATGACAGTTTTGTTGATCTCTGTGCTCCGTGTTACTTTAAACCCCCCGTACCCCTCCCAGGACGTGGACTTCTACTCCGACAGCATTGTCACGGAGTGTAGTAACACCCTCTCCTCTTGGGCCATGATAGAGCTAGCCTACGTCTCTCTGCTCAGCACGCTCTGCTTCTCCTTCAGTTACATGGGAAAAGACCTGCCAGCCAACTACAACGAGGCCAAGTGTATCACCTTTAGTCTCATGATATACATGATCTCCTGGATCAGCTTCTTCACCATATATTTTGTTAGCAGGGGGGAATTTGCCATGGCCATGCATGTGCTGGCCATAGTGTCCAGTGTGCTCGGTATACTCGGTGGTTATTTCATGCCCAAGGTCTACATCATGGTGCTGAGGCCCCAAATGAACACAACGGCCCATTTCCAAAACTGTATTCAGATTTATACCATGAACAAAGACTGAAAGATATGTTTTCATCATAGATTTTGCGTTTTGCATTTCTGGATACTTATTCCCAATCCATTGTATGGCTTTAAAAATGACATAGTAAATGTTGCTCTGCTCTTAGCTGGTAGAAAATACATGTTGCCCTTGCACATTTAAGTGTATGTATAACTTTCTCTAACATGGTTGTCATGTAGCTTTGATAGCTTTTTAAAGCACTTCTTTTTAAGTGTGTGTTTTTACTGGGGGGAATTGAGAAAAACAAAGCTAACCTTCTTTAGCTGCAGCTGGTGTTGTGGTCTTTcttcagtgtctgtctgtgacaTGTCTGGTCTCCAAAATGTGGATCGGTATAAGCCTCTGATTTGAAACCAGCTATCCAAAATATCCATACACATGTCCCATAGTGCTCTGTTTGAAACAGAGAATGAAAGAGGCTCTAGTGGCTGAAAAACTGTAttagcatgggcagtgccattgagggcttccaccattttaatgtagtcaactgggtgggagttccaacttcattggctgatccctgttggtgaccctgttggagtcatgtccaaaCGGGTCATCAGCAGGGATCAGCCCATTgtgaagaagaaaattgactaagcctcaatggtgctgccaCAAACGCTATAATTGTGATTATACAAAGATCTATCTATCTTTATGGTTTTAAATCCAAATGTGTGAGTCACTATGTACATTACATAAAGTGTAAATCAGAAGGACAGAAGCTAGGACACAATAGTCCGGTGTCCCATTGTGACCCATCCACAGGGGACGCACAGACCGAACTCACAACTAACCACAATTCCCAACCAATGCGTCTCTTGGTACGCATCCTCTAATCATTTGAATCTGTTGACAGTTGGAGAAATTGCTTTTGCTGCACTGAGAATTCGAAAAGTATAAAACCCAACGGTccaatattctagaacactgctgtggttAGTGTACAAGTTTGGTACTCTGATACTTGTTGCTCTAATCAATTAATATACTTTTCTTTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1585929 lncRNA downstream 8604 53703000 ~ 53703266 (-) True G1388583
TU1585924 lncRNA downstream 27662 53683918 ~ 53684208 (-) True G1388578
TU1585877 lncRNA downstream 40180 53669718 ~ 53671690 (-) True G1388532
TU1585821 lncRNA downstream 112105 53598077 ~ 53599765 (-) True G1388480
TU1585864 lncRNA downstream 142695 53566411 ~ 53569175 (-) False G1388521
TU1586705 lncRNA upstream 48902 53776875 ~ 53777128 (-) False LOC110491103
TU1586704 lncRNA upstream 49349 53777322 ~ 53779419 (-) True LOC110491103
TU1586712 lncRNA upstream 67040 53795013 ~ 53795218 (-) True G1389286
TU1586714 lncRNA upstream 68838 53796811 ~ 53797106 (-) True G1389288
TU1586715 lncRNA upstream 72040 53800013 ~ 53800428 (-) True G1389289
XM_021566501.2 mRNA downstream 16106 53689172 ~ 53695764 (-) True LOC110492296
XM_021566499.2 mRNA downstream 30822 53678310 ~ 53681048 (-) True LOC110492295
XM_036947258.1 mRNA downstream 45027 53639870 ~ 53666843 (-) True LOC110492293
XM_036947254.1 mRNA downstream 45028 53639870 ~ 53666842 (-) False LOC110492293
XM_036947257.1 mRNA downstream 45029 53639870 ~ 53666841 (-) False LOC110492293
XM_036947263.1 mRNA upstream 2191 53730164 ~ 53757010 (-) False LOC110492299
XM_036947267.1 mRNA upstream 2191 53730164 ~ 53757010 (-) False LOC110492299
XM_036947266.1 mRNA upstream 2191 53730164 ~ 53757011 (-) False LOC110492299
XM_036947262.1 mRNA upstream 2191 53730164 ~ 53757015 (-) False LOC110492299
XM_036947264.1 mRNA upstream 2191 53730164 ~ 53757015 (-) False LOC110492299
TU1585503 other downstream 678949 53031932 ~ 53032921 (-) True G1388236
TU1585247 other downstream 1139563 52571710 ~ 52572307 (-) True LOC110492250
TU1585179 other downstream 1283111 52418876 ~ 52428759 (-) True spen
TU1583828 other downstream 1721875 51983134 ~ 51989995 (-) True LOC110492226
TU1582837 other downstream 2596805 51113403 ~ 51115065 (-) True dffb
TU1585952 other upstream 2364 53730337 ~ 53732915 (-) True LOC110492299
TU1587231 other upstream 816755 54544728 ~ 54545243 (-) True G1389763
TU1587517 other upstream 1256845 54984818 ~ 54986263 (-) True G1390030
TU1588497 other upstream 2096186 55824159 ~ 55826631 (-) True LOC110492352
TU1589255 other upstream 2336530 56064503 ~ 56064862 (-) True G1391586

Expression Profile