RNA id: XM_036947269.1


Basic Information

Item Value
RNA id XM_036947269.1
length 8523
RNA type mRNA
GC content 0.46
exon number 11
gene id LOC110491103
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 53776875 ~ 53919347 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTCCCTTTAGTCCCGCATGGGACGGTCGGGCAGCCCCGCTTTGTGCGTTTCGGCTTCTGGAACTGCACTTCCTGGATTTTAGCGAGCCATTCCGCGCACACATGTCCCATCAACGCTACATGGTTTGTGGGTGTGTGGTATCTAGTGGAGAAGAACAAGAGCCTGTACATAATACCTAATATTCGCACACATGTATACTTTATCAATTTAAAGCTTTATCTAGGAGAGACATCGATGCGCTTTGATTTGCCTTACAGGAGATGGTTCGGGACGGCGGCATTCAAGTTCGATTCAAACAGGTGGAATACAGTAGGTGTCGGGTGGAGTTGGGAGGAGGAAGGTATCACGACAGCACGGGCTGCTATCTATCCTTCTAATTAGTAGCGGACCTGTGCAATATATggcctctgtctcattctgtagCCTTATTTATGTAAAATATTCTACCACGTTTGATTGTCTACTCCGGGACAGTAAAATTGTGATATTCAAACGGCGAATCTTTATTAGCTGGGAGACCATTGACACACAGGTGGGAGATACCCGTTTCTTAGGACGGCCCCTCTTTCAGTTCCTCAGAGCAGGATATGAGCTACTGACATTTGTTATTACCCTTTGGGACAGGAGGCGAACGTTTTCTGCTAACAGGTGTGAGAGAGATCACACCAATCTTCATAGCCTGATACGGAATCCTTCCTCATTGTTCGCAGGAATATCAATCTAAGTCATATGTTGATCACTTTCTAGCCAAGAGAGATACATTTAACGGTTATTTGAAACATACATCGAATAAAATAGTGGATTATTAGTATTTGGAAAGACCCTGTCCTCCTATTTAAAAAGACACGGGACATCAGAGAGAAACCATGTCAATGAAAAAACCCAGCTTGAATTTACCCAAAATGAGCAGAAACCCGGTGGTGTTGGAAGGAGAGATGTTCGGCGAATTTCAGGACTGGTGTCTCCGTACTTACGGGGACTCGGGTAAAACAAAGACAGTCACCCGGCGAAAATACAATAAGATTCTCCAGACCCTTTTACACACCGACGACTCCGACGCGGTCTACATCGAGAGCAACCACATCAACGCCAAATTCAAATTCTGGGTGAAATCCAAAGGGTTCCAGGTCGGGACCATTCAAGGGGACCTGAACAAGAATGGAGCCACTGACATACCTGTCCTGTACGTCCCCATCAAGGTGACGtGTGTGGACGGGAGCTCTGGGTCGGAATCCTCTCTGAAGAGGGTGGCGGTGGTGGAGGACTTCTTTGACATCATCTATGCCATGCACGTAGAGATCAGCACCGACCCCGGCAAAGCACCCAAACACGCCGGACAGAAGAAGACCTACAAAGCGATAGCGGAGACGTATGCCTTCCTGCCCAGGGAGGCAGTGACCCGTTACCTGATGAGCTGTGGTGAGTGTCAGAAGCGGATGCACATCAGCCCTGGCGGCGCAGAGTTCAAAGAAAATGACAGACCGACATCACTGGTGCCGGATCTCATCGACTACAACATGCCGCTGACCACCACATATCTGAAGCAGATGAAACTCCAGTGCATGAGTACCAATGAGCAGGATGAGACTTCAGTGAGCAGTGAGGACTTTGATATGAACGACCCCACATGGATATCAGCTGATCACGGCCCTGCTTCCAACCTGAGTCCCCCGAACCGCAGAGAGAGAATGCACAGCCCACAGAACGCACACATTAAGGAGGAGGACGATGACTCATCCTCGGAGAGCGGCAGTGGGAACGGCATGCACACCATGACCCTTCCGTCTACAGGCGGGGCGGCCCTGGGGTCTGAGAGGTGCATGGGGGGAACCCCCTACAGGAAGGTGGTAAACGGCAACAGGCCCTCGGCCCCACTGGACTTCAGCACCACCTCCTCGTCCTCATCGTCCGAGGACCAACAGGCTCCAGTCAACCTGAGTGAGACCAGGCTGCCTGGGTCTGCCCTGATGGGCCCCTTCCAGCTCGACCCCCCAGACGAGCTGCGCAGGAAGTACCCCGTCAAGCCTCTCACCCATGCCGCTGAGCTGCGCCTGGACAGAGACTCGATCAGGGACTATGGCAACAAGTCTCCTCAGTACAGCTCAGGAAGCTACGACTCATTGAAGATGGAGACATGTGCCGAGGACCTGACCGTGACCAGAGGCGTGGCGGCGGCAGACGACGATGACGACGATGATCACGACGACAGTGACAAAATCAACGACACAGAGGGCATGGACCCTGAGAGACTAAAGGCCTTCAACATGTTTGTGCGTCTGTTTGTGGATGAGAACCTGGACCGCATGGTGCCCATCTCAAAGCAGCCCAAGGAGAAGATCCAGGCCATCATTGAGTCGTGTAGCCGCCAGTTCCCAGAGTTCGAGCTGCGCGCTCGCAAGCGCATCCGCACCTACCTCAAATCCTGCCGCCGAATGAAGAAGAACGGCATGGAGACACGAcccaccccacctcacctcacctcagcCATGGCTGAGAACATCCTGGCAGCCGCCTGCGAGAGCGAGACACGCAAGGCTGCCAAGAGGATGCGGCTGGATGTCTACCAGGCACATGAGGAGCAGATAGCACTTGACAAGCCCAGTTCTCGCGAGCCAGCCTCCCTGGCCCACTCTGCCTACTCCCTGGCCGCCTCAGCCTACTCCCAGGACCAGCTCTACATCAACGGCCCTACTGACCTCAGCATGAAGTCCCTGGTGTCCAACTCGTCATCGGCCAGCTCCAACAGCCACGGGCGGAGCGGTGGCGGCGGAGGGAGCGGGGCCTCGGCACAGCTCAGCCCCACGGAGATCACAGCCGTGCGTCAGCTCATCGCCGGCTACCGCGAATCAGCCGCCTTCCTGCTCCGCTCGGCCGACGAGCTGGAGACCCTGATCCTGCAGCAGAACTGAGATGAAAACTCCATCTCTCCCcgactccctcctccctctctcactccaacTCTCCCACACGAACCCTAACTAACCGACCAACCACTCTCGCACTCAGCAGATCCATCCGTCCGTGATTCGTCCTCCTCCACCAACCTTTACATTCTCCTCATCGCCAGGAAAAGAAGGCATGCAAACAGCGCTACCTTCCTCTAGTCTAATAATCCAAACCCCCTTGATTGTTTTAGCATTAGTGCGTGGAGAGAAAGAGCACTGTCTGTGACCACTTTGGAACagcgtttctccctctcttcaacCACCTGTAAAGGATTGCGCTCCCTCCCAATCATAACAGCTCTCCCTCACTCCCACAGCTCTGTGGAAAGAAGAGGGATGacacagggagtcggaaatgagTCTACCtagtgtgggggagagagtggtggGCTGGTGCACTGGAGAACACTGAAGGGTTGTGCAGTAAGGAGAGAAGAGCGCCCCCTTGTGTAAGAATAAAATAAGTGGATCCTTTTTGTGTGCCAGGAAGCTCTATGTGCTGCAGTACACAGATCCCCTAAACAACCTCGCCCTCCCCAATAACAATGAAAGCGAGACTCCCTAAATAGTACAAAGAAAATTAGTACAAAAAATATTCTACAGGTTTTTTCGAAGCCTGTAGAATATTTACGTTTGTTTGGCACCGTTCCCGAGCTACTGAAAAGGGGTGATGACTGATCTGAAAGAGAGCACTAACTATAAGACACTGAACCACTTTGTTAATGAACAGAGGCTAAGGAAGAAGACTGGGGGAAAAAATGTCAAAAGAGAGACGCGCTCGCTGTAAATAAGCTCTCTGTGTCCTAAAGCACTTTCCCCTGATTCAGACCTCACCTACCCGTTGAGGAATAAAGACCTGATTCAGACCTCACCTACCCGTTGAGGAATAAAGACCTGATTCAGACCTCACCTACCCGTTGAGGAATAAAGACCGCGATGTCCCGGGAGCAACACTTTAACTTATGCATTATGGAGACGCCATCTTTTCCACATGGAAATACCTCAGATCTACCAACCGTTTTAGTACTTCATTCATACTGGGTGCCGTTATCATACCACGCTCACCAGTTGCTACCTGATGTGTTCAGTGTTTTCAAAGACCTGCAGGAAGCAACGTCTTAACCATTTCAAGGAGAATAAATATTGTAACTATAGTTCAAATTCTATCCCAAACAAAGTATTGTTTGTCCCGTTATTTGTGTAATGTATATATTCAGTCCATATTTGATTCTAGAAGCATCAGTAAAGTGAAGGACTGGGGGCAAGGAAGTATGTTCTGTGGGAGACTGAACCTCTCCGAAGGTAGCTGGAGATGTTTTCCCAGAGGCCTCCATGTTTCCCACCCCCCTGGTGGCTCGTTGCTCCCTCATCAATTCCAGGTTTTGGTTTGTCCCGATCTGGTTGTCAACACTCATCACTCGATGATACCATCtcttctgggtctggttctgcgTTCCTCTCTCTAACCTACCCCCCTCCTCCGGACCTATACCCCccacccccttctcccccctGACCTTACCTGAGCTCCGTCCAGCTTAGTTCTGGACCTTGGTTCTGGGAGGAATTCTGTATTTCTTTGTCTATTGACTCTTTGAGATGGCCATTAATccacgctgctgctactatatGGACCGGACTTTTGCCACAGACCTATAACCTCAAGTCAGGACGCCAGCCTCCTGCACAACCAGAGCACCTCAAGACAACAACACATTCAAAAAGAAGCAAAAACTACTCGAGACGGATAAGAGACAAAAATGTCATTTTTGAAAAGGACATGCCATCCCAGTCAGTTGATTCTCTCTGCTACTAGGCACTCTGGTTGATCTTTTTGTTCTTTCATAAGGCTGTGTTGTTTCTACATTCACTTTTTTCCTTTGTAGTTTTCTTCATGAGTTTGAACCTCTGGAGGCATAAAAGGATCAATGTGCTTCTCTTGCAGCCACTCACAAGGGTGATCTGGGCCTATCTATCTTACTCTACAATGTGTGGCCAAAGTCTGTGAGGTTTGTACCCTTTtagaatgagagaaaaaaatgctCAATGTTTCTTCAAGAGGCAAGCCTGAAGGCTCCCTTTTGCACACTGAAGCAACATAAATCTGTGACGAAGGCCCTGCTTGTTCAGGTATCCATCTTGCACTGGCGAGGTGTGTCCTACTAAAGGAAAGAGGAAGAGTGTCGCAATGCAGTTGATAATCATCACATTCCTGGGCCTTGACTGCATAGTGTTAATGAAAAGAGGCTGAGCCCAAAGTGCGAGTTGTACAACGCATCACATATGACCACCTCTATTGTGTAAATGAAAGCCATTGATTTAGATGCACTAGCTCCGTGGCCTGTGAGAGGTCATGTCTAGAAGGGATTCCCCTAATGTCAAAGTGATGTCAAAACATAGATATTCGAGTCACATCAGGGAGAatttttgcattttagctaaccctaactattttcctaaccttaacctgctGCATAAGTTCTCCTAGCCTGCTATGAAAAGTCACAAATGACATTAGCGGCATCCCATCTAGTCAAGACCCCTGTGAGAGATTGAATGGAGCACTGGGCTCACTGGCAACACTCTGAACCACAGAACAACACCTTGATCTATCCTCCTAGCATACATGTGCAATGTCAAATCTGATCTCCTTAATGAGTACAAAATGATtaagacatttttttatttatttttatttttatgttatgaAAATAGTATGCCTAGATAGAAAGTAGAAAATTAAGTCCAATAAGTCCTCTTTATCTCAGAGCAAGCTTTTGATTGAATCTGCTTAGTGGGTAAAAAAATGACAAACACAAGAGAAATATGCAAAATGACCAGTCAAGAGGAAACCCCCTCACTGTGTTCTCTCTCAATGTGGCTTTGATGGCTTCAAAATGTGTTTCCTTATTAGTATCGCCCTCATTTCTGCGGATCCACCCTTCACTCTGCTCACGCCCTGGGGTCATAAGCTACAATTCTCTCAGTACAGTAGATGAATATGACGGGGGGGGGCTAGAATTAACTTAGAAGGGGATTCTCTTCATTCTTATTCACTTCAGTCTTAAAACTGCCTTTTTTGCCACTGCAGGTTTGAGGTTTCAAAGGATTGCCATACAAGTAGTACACACAGTGCTGTGGCCAAACTGTACATAGTGCTGTAATTGATGATGTTACAGAGCAGTTGCTAGAGACAGTTCTGCTGTCCTCTGTATTTCCCTACTACCCCAGGTCAACACAGAGCGATGGATGGATCCTACCTCTTTAGAAATGACCAGTTGAGCGCTGCTGAATTTTGTAATGTCACATGCCACGAACGTCTGCTATATAGTTaagtggggggaaaaaaagaagaagaagattgTGAAAGTTATGCATTTGTAATATAGACGAGGGACAATTAAATGTATCTCTAAGAAGGTGGTAAGAGATTATATAGTAAAGCTCTCGCTCAatactcctccctcctcctccgtttGAACCTCTGGGGTTTTGCTCTAGTTTCTCACAGCCGGCTACACACGTTATGAAAACATACTGTAAAAATAGGCAAAAGACAATCTTGGAAATATGTAACTTGCTCACTGTTTAATTTCCATTCCTTTCTGTGTGCAGCTATTGTATACAGTGCGTCTTGGAGTATTTTAGCCATAATCACAGCATTCTTACTCAAACTTCTGGCTCCTTAACGGCGGTGGAGCGCTCATATTGGCCCACTGTCGATACacattttctatttttattattattttatacatattttGTAGTGCAAGTCAGTGGTATTATCAAATAATATTTTGTACAATACCAACATCTCAAGTGAAGTTACTCTGTATGCCTATACTGTACATTCCAAACAAGGATGTCAACACGTTTAACAACCGACCTGACCAGCTTCACGTTTAGTGATCTGACCTCTGTGCCCAACACAAAACCCACACCCTAACAAACGCTTGAGGGAGTGCTCTCTGTTAAGATTAACACGGTTGGCCTTGTGATTAGCTTCAAACATGTTGTTGATTGGAGCCATGATTATTCTCCTGCTTAGGGCCAAAAAGACTTGACATGCCAGAGAACGTGCCAACCGAGCACAGACCAAGTTTGCAACCTTAGCCATGACCTTCATGAAACTCCCCCTCTCAGACTACTGCATGTATCTCTCCCCCTGGGAATGCTATGCAGCAGTGTCAGCACTTCAGTGAAGGGGCAGTGTTTTGAGTGTGAGAAAGGTGTGATTCCCTTAACCCTGATCATACTGTTTTAAGCGCAAACTGACATTGGACCTCAATGACTTTACAAATGTCACCCCCCCCAACAGAGATGGTTCCACTCAGACAGGAGCAAAAATATGTGTGGTGCTGGTCAGGGTACCGCAAATGGACACACATTTTAAAACAAATATCTGCTTTGGTCAGATGTATAGCTCGACATAAAAACAAGAAAGGAGAAAAAGATGGCTGAACGTTTTATTTTTCTATCAGGGCAGTGTACAGCTACAGTCAAATTAAAATAGTTTTTCCAACCATAGTGTGTTTTATTTTATCATTTGGTGGTGCTTTGGATTCCTCTGTTCTGTTTTAGGTTTTCCACTTTACCTACTGTACCAGAAGCTGATTGTCTTTCTCAGTTTCGGTTTGTACCTAATACCAATGTGAAACTGTATTTTCCTCCTGATTTTGGACTCAGTGGAAGTGTGATGTTTACATGTACAGATTTTTGCTattcttttttgttttgtttggtcaTTTCTCTCCACCCTGTTTTAAGTTAGTCTGATACCTTGTATGTTGATGGGAAATGGGACCATGTCTAAATTAGGTTAATGTCACATGGACACATATTTAGAAACTGGGTGTTGGGAGAGATGTGTGCTTGGCTTATGGAATGCCCTCTCCTTAGCTTACCTGATACACACAAACCAGTGAGTCACAGTGAACTGAAGCTCTGGTTTGACCACTTTACCAATATAGGAGAATTTGTTCCTTAGTGAATTATAAGCCATTGACATGCCCTTGAAGGGTTTTCTAGACTATTAGTATATTTAGTGAGGAAAAACTCAACTGCAGACAAAAACCTCAGGAAAAGGACATCACTTTTTTAACACATCTTACTGAAGGCCCATTTCCCTCATTGATACCATATAAATTATAtcaaaataattataattttttatatttattgtgttatatatatatatatatatatataacagtggATACCTTTTTTCCAGTACATGTGGCTAAAAaaattgtattattatatatatatatatatatatatatatatatatatatatatatatatatatatatattatgtgtgTGAAGCAACTTAAAGAttgaaaaaatgagaaaaaaaatatttctgtTTGTTTAATGCAAAACAGCATGGGTGGTTATTTTCCCTAACATATCACTTTGATTAATGAAAAACCAATGATTTGAAATTAAGCTTTCTTAAGTGTGATGTCACTGCTAAGGTCAAATGTTTCCAAACTTAAATGTGACTTTTTTTTCTCCCAAGATGTACATCACAAAGCTAAATATACTAATAAAACAGTGTGCTATCTATTAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1585948 lncRNA downstream 55726 53720683 ~ 53721152 (-) True G1388597
TU1585944 lncRNA downstream 59814 53716740 ~ 53717064 (-) True LOC110491101
TU1585929 lncRNA downstream 73612 53703000 ~ 53703266 (-) True G1388583
TU1585924 lncRNA downstream 92670 53683918 ~ 53684208 (-) True G1388578
TU1585877 lncRNA downstream 105188 53669718 ~ 53671690 (-) True G1388532
TU1586910 lncRNA upstream 118047 54037394 ~ 54037660 (-) True G1389477
TU1586912 lncRNA upstream 119903 54039250 ~ 54039467 (-) True G1389479
TU1586922 lncRNA upstream 136890 54056237 ~ 54058839 (-) True G1389489
TU1586925 lncRNA upstream 139572 54058919 ~ 54059264 (-) True G1389490
TU1586926 lncRNA upstream 140891 54060238 ~ 54060683 (-) True G1389491
XM_021566505.2 mRNA downstream 677 53758360 ~ 53776201 (-) True LOC110492300
XM_036947265.1 mRNA downstream 19859 53730164 ~ 53757019 (-) False LOC110492299
XM_036947262.1 mRNA downstream 19863 53730164 ~ 53757015 (-) False LOC110492299
XM_036947264.1 mRNA downstream 19863 53730164 ~ 53757015 (-) False LOC110492299
XM_036947266.1 mRNA downstream 19867 53730164 ~ 53757011 (-) False LOC110492299
XM_021564407.2 mRNA upstream 37564 53956911 ~ 53968126 (-) False commd7
NM_001165191.2 mRNA upstream 38574 53957921 ~ 53968095 (-) False commd7
XM_036945764.1 mRNA upstream 39068 53958415 ~ 53968135 (-) True commd7
XM_036947294.1 mRNA upstream 248033 54167380 ~ 54236936 (-) False LOC110491105
XM_036947295.1 mRNA upstream 248033 54167380 ~ 54236936 (-) False LOC110491105
TU1585952 other downstream 43963 53730337 ~ 53732915 (-) True LOC110492299
TU1585503 other downstream 743957 53031932 ~ 53032921 (-) True G1388236
TU1585247 other downstream 1204571 52571710 ~ 52572307 (-) True LOC110492250
TU1585179 other downstream 1348119 52418876 ~ 52428759 (-) True spen
TU1583828 other downstream 1786883 51983134 ~ 51989995 (-) True LOC110492226
TU1587231 other upstream 625381 54544728 ~ 54545243 (-) True G1389763
TU1587517 other upstream 1065471 54984818 ~ 54986263 (-) True G1390030
TU1588497 other upstream 1904812 55824159 ~ 55826631 (-) True LOC110492352
TU1589255 other upstream 2145156 56064503 ~ 56064862 (-) True G1391586
TU1589295 other upstream 2306067 56225414 ~ 56226061 (-) True G1391624

Expression Profile