RNA id: NM_001165191.2



Basic Information


Item Value
RNA id NM_001165191.2
length 1183
RNA type mRNA
GC content 0.42
exon number 9
gene id commd7
representative False

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 53956911 ~ 53968135 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATACCATCACGGAAGTAGCCACTAAAGTAAACATTTCCAGGCCGACAGCTATAATGTTGCAACTGCAATTTACCAAAGATACTTTACCAGATTCTGTGAGCAATGACTTTCAGAACTTGAACAAATTCAACGAACAGCAATTCACAAGTCTGACTGAGATTCTTTTCAATTTCCTGTTGGAGCCAAAAGAGGCGGACAGGTTCCTGCATCAGCTGAGTGAGTTTGCAGGAGAGAATGGGATGAGTGCAGGCCCACTGAGGAACCTCATGAAGAGCCTCCTGCTGCTTCCCCATGgTTCCCTGAAGAAAAATCTGACAGAAGACCAAGTCAAAGAGGACCTTCTCACTTTAGGAGTCAGTGAAGACAAGGCAGACCATTTTTCACAACAGtggAGCCTCCACTACCCTGTGTTGTCCAGGCTGGCTGTAGGACAGACACTGATGGTcaaccagctggtggacatggaGTGGAAGTTTGGTGTGACCGTGGGGACGAGTGAACTTCAGAAAGTTGGAAACACCTTTCTACAGCTTAAGTTGGTCATCAGAAAGGGGAACTCAACTGAAAATGTCTACATGGaGTTGACCCTCCCCCAGTTTTACAACTTTCTCCATGAAATGGAGAGGGCCAAAGCCAGTATGGACTGTTTCAGCTGAGCCTGATCGCCAGTAGCAAGAGCATGTACTGAATATGTGTCCTAGAGGGGCAGCAGAAAACAAAAGAGGAGATGGAAGTGATTGACACTGGATGGATCCCaattggcactctattccctttatagtgaacAGGGGCAATTTGGGGCATGCATGCAGTTCAAAATAGAACATACTGAATCTGAATGAACCTTCCAGCTTCTCACATACCAAGATTTCAATATTTCTTTTGTGTAATTTTGACATTTGTCTTTTGAAATGTGCACAATTGTTTTGCAGTAGTGATTTTGTGTGTATTAGTAACTGTCCGTGAGTTTGTTTTGCGAGAAAGTATTATATTGTAACCCAATGACTTCAATTCCATTGGCTGTCACGACAAGTGATGTGAGGCATACGTGTAACAATTTTTTGCAATCTCTCATCATTTATATTACTGATTTGCTTAACTTTATTTTTAACTAAATCAAATGGAACATGATTCACACTTGCACTTACTTTTTTCTCTCCAAATAAAGTATTCAGATGTTGTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1586758 lncRNA downstream 111803 53845871 ~ 53846118 (-) True G1389332
TU1586757 lncRNA downstream 112762 53844859 ~ 53845159 (-) True G1389331
TU1586742 lncRNA downstream 132027 53825674 ~ 53825894 (-) True G1389316
TU1586741 lncRNA downstream 132362 53825345 ~ 53825559 (-) True G1389315
TU1586739 lncRNA downstream 133882 53823811 ~ 53824039 (-) True G1389313
TU1586910 lncRNA upstream 69299 54037394 ~ 54037660 (-) True G1389477
TU1586912 lncRNA upstream 71155 54039250 ~ 54039467 (-) True G1389479
TU1586922 lncRNA upstream 88142 54056237 ~ 54058839 (-) True G1389489
TU1586925 lncRNA upstream 90824 54058919 ~ 54059264 (-) True G1389490
TU1586926 lncRNA upstream 92143 54060238 ~ 54060683 (-) True G1389491
XM_036947269.1 mRNA downstream 38574 53776878 ~ 53919347 (-) False LOC110491103
XM_036947268.1 mRNA downstream 38578 53776878 ~ 53919343 (-) False LOC110491103
XM_021566505.2 mRNA downstream 181720 53758360 ~ 53776201 (-) True LOC110492300
XM_036947265.1 mRNA downstream 200902 53730164 ~ 53757019 (-) False LOC110492299
XM_036947264.1 mRNA downstream 200906 53730164 ~ 53757015 (-) False LOC110492299
XM_036947294.1 mRNA upstream 199285 54167380 ~ 54236936 (-) False LOC110491105
XM_036947295.1 mRNA upstream 199285 54167380 ~ 54236936 (-) False LOC110491105
XM_036947296.1 mRNA upstream 199285 54167380 ~ 54236936 (-) False LOC110491105
XM_036947297.1 mRNA upstream 199285 54167380 ~ 54236936 (-) False LOC110491105
XM_036947298.1 mRNA upstream 199285 54167380 ~ 54236936 (-) False LOC110491105
TU1585952 other downstream 225006 53730337 ~ 53732915 (-) True LOC110492299
TU1585503 other downstream 925000 53031932 ~ 53032921 (-) True G1388236
TU1585247 other downstream 1385614 52571710 ~ 52572307 (-) True LOC110492250
TU1585179 other downstream 1529162 52418876 ~ 52428759 (-) True spen
TU1583828 other downstream 1967926 51983134 ~ 51989995 (-) True LOC110492226
TU1587231 other upstream 576633 54544728 ~ 54545243 (-) True G1389763
TU1587517 other upstream 1016723 54984818 ~ 54986263 (-) True G1390030
TU1588497 other upstream 1856064 55824159 ~ 55826631 (-) True LOC110492352
TU1589255 other upstream 2096408 56064503 ~ 56064862 (-) True G1391586
TU1589295 other upstream 2257319 56225414 ~ 56226061 (-) True G1391624

Expression Profile