RNA id: XM_036947297.1


Basic Information

Item Value
RNA id XM_036947297.1
length 7030
RNA type mRNA
GC content 0.57
exon number 14
gene id LOC110491105
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 54163558 ~ 54236936 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTCCACCTCTGGCTTTGGGCTAAACCCCAATGTCCTGAAATCCTAGAAACCCCCTGGTAAACATGTTCTATAAGCAGAACTGTATATGTTATTTTATGGATTTGGCCAGCTAAGAAAGGCAGGGGTTTCATTTGAAACATTGCCTAATTGTTTACCAGTAAATTTGGGCTGAATTAATTATATTTGTGTCATCCATTTCCTGCAAAGCTTTACACCAGCCGGCCTATactgtccaaatattgtttaAGTCTGAATTTAATAGCATATAGCCAGcctatttatgtattttttaccTGTGCTTCTTGAAACGATCTACAAGTCTGGGTGGCAGCAGAGAGCACTAAGTGATGCTGAATTTCCAGACAGCGATTCGCCACAGACAGAACCGCTAAAGCTGGGCGGTGAAAAAAACTCGCGAGCACACTTCCACTCTGTTTCTACCACTTCGAACCACTCCGGCGAGATATAGTTGCATATGTTAGTGCAATATGAGTAGAAGATGTGCCAAAACCTAAACGGAATTAACCATAAAACATCATTAGGCCTACAGCGTGTTATGTTATTGTAGCCTAATTTGCCGTTTCCATCTCTATGCGCTGTTAAATCCGGTTTAATAGGGATTGCTGCAGTTTATTTGTTTGCAGTTGTGAGATAAAAGCTCGACTTCTTCTGCCTTTTCTGATAGGGGTTTCATTTCTGTTTTTCTGTATTTGTCAAAGCGGAATGAATGACAAAGACAAAGGCGGATGTTAATTCGCCAACTCACTTTGTCTCGCCGAAGGAAAGGAGACACAGGCACAAAATGGAAAGCGGGACGGAGAGCGCCGACAGCGGGCAGGCGAAGCCTCAACAACAGCACCAGTTCGAGCAACAGCCCGTAGTGCAGCCCATTCAAGTCAACgcaaagaaaaaaaataatcgGGCTCCATCACCCGCCAGACCCAAGGATGTGCCTGGATGGTCCCTCACCAAGATCCGTGGAGGAATCGGTACACCAACACTGAGCGTTAAACCAGGATCCATACATTTAGGCAGCCGGGTGTCCAGGCGTAGTCCGGTTAGCGGGAAAGAGACGAAATCTGAGAAAGGAAAACTGACGGGAAAATCCACGGTATCGGTAGCCAGTGCCcagaagagcagcagtaaatcgATGAAAGGTGGTCGGAGGAAGGTGTCCGATGCGAGCAACGCCTCCGACGACCAGAGCAAAGACTCCGGTTGCGCTGCGGGCAAACGTTCATCAACCGATAGCAGTTCCGAGCTCTCCGATTGTGCCTCAGAGGAGAATAAACTATCCACGGACGCTCTGAGTAGTGACACCGAATCCAACAGCCGAGGCGGGGGTCTTGATGGCGATAAACCAAGCAGTGACTGCGGACATGGGCCACCGGATAGGGGTAGTCGTGGTGACCATCACGCCAAGACCCCAGTGGATAAGGACCGAACCTCCCTGGGAGTGGAGACCGTAGGGGGGAGCATTTCTCCTGGGGATGAACGGTCTCTCACCTCGTTCGACAGCCGGGTGCCTGCCAGCACATCCCTAGCTTTCTCCGACCTGACGGAAGAGTTCATGGATGGCATGCATGAAGAATTAGTCAGAGAAATCGAGGAACTGAGATCAGAGAACGATTACCTAAAAGATGAGATGGAGGAGCTGCGCTCTGAGATGTTGGAGATGAGGGATAtgtacatggaggaggatgtgtacCAGCTGCAGGAGCTGAGGCAACAGTTTGAGCAGGCTAACAAGACCTGCCGCATCCTGCAGTACCGCCTCCGCAAGGCCGAGAGACGCAGCCTCCGCGTGGCCCAGACGGGACAGGTAGACGGGGAGCTCATCCGGACCCTGGAGCAGGACGTCaagGTGGCTAAAGACGTGTCCATCCGGCTGCACAACGAGTTGGACTCTGTGGAGAAGAAGAGGGGTCGTCTGGAGCAGGAGAACGAGGAGCTGAGGGTCAGGCTCCAGGACCTAGAGGTGGCCAAGCAGGTCCTGCAGACTGAGATGGAGAAGCAACGAGAGAACTCTCTGAAGAAGAGAGGCGCTCGGCCAAACAACAAGCCAGAGAAGAAGCCATCTGTCCAGCAGGAGGACAACTCTGACCTCAAGTGCCAGCTCCATTTTGCCAAGGAGGAGTCCGTTCTCATGTGTAAGAAGCTGACCAAGATGGCCAAGGACAGCGAGGCCATGCGGGAGGAGCTGGCCAAGTACCGCTCGGTCTACGGCGATGTGGACGCCTCACTCACCGTGGAGGAGGTCAACGACTCACCCCACACCCGTGAGGCCGAGGTTAGAGTTCACCTGAAGCTGGTGGAGGAGGAAGCCAACCTGCTGAGCCGGCGCATCGTGGAACTAGAGGTGGAGAACCGTGGCCTACGGGCCGAAATGGACGACATGAAGGGCCAGGAGCTGCCTCcagggctggggctgggaggCATGGGAGGCCCTGGAGGAGGAGGTCTGGATAACGTGATGGAGCTCCAGAGGCACCTGCAGTTTGTGGAGGAGGAAGCGGAGCTGCTACGGCGCTCGCTGCTGGAGATGGAGGAGCAGAACAAGCTGCTGATGAATGAGATCAACCGCTACAAGTCGGAGCTGCCGCTGACGTTGGACCCAAACCAGGATGACTCCTCGTCCAtctctctcctggaggatggtcaTGGTGGGGGAGCTCTCATCAGCACCGAGGCCCCCCATGAGGAGCTGCTGCAGGCCGCCAGGCTCCAGATCGGGGAGCTGAGCGGCAAAGTGAAGAAGCTCCAGTACGAGAACCGTGTGTTGCTGTCCAACCTGCAGCGCTGCGACCTGGCCTCCTACCACAGCTCTTCTAGGCCCGCCCTGGAGACCGACGCTGAGGCAGGGGACTCGGCCGAGTGCCTCCCCAGCCAAGCGTGCCGGGAAGGCCCCATCGGAGGGGAGAACAAGCCCCTGGAGGAAAAGGAGAAGAAGACGTCCACGGGGGTTCCCATTCACCTGCACGGTAACGTCCCCCTGGGGCTGAATGACCATGAGGCCCTGCTGGCCATGAGGGACCAGGCCCGCCTCATCTCTACAGCCATCCAGCTGCTGACCGCTTCTGATTCCAactgcccctccctctccctttaccGCAAGATCTCCTCCAACTACTCCGGGGAGACTGCTGAGCCCTGTGTCCCAGAGAAGAGCCAGCAGTCCCAACCCTCGGAGCTCCAGGACCTGCCCCTGGTGGAGGCTCTGACGGGCAGGCTGCGAGCACTGCACACCCAGCTCCAGGCCTTCGTGAAGCGAGTGGAGAGCCTTGGCAGCGCCCCTCCTGGGAGGGAGCAGGTGGAGGTGGCATCCCCCCTGCCTCTACTGTCCGAAGCTGGAGACTCCGTGGTGGATACGCCCTCTGCCTCACACCCCTGCCCTCCAGACGACCAGGCGGGTGAGATCACTGCAGGGCAGAAGCAGCCCGACTTTAGGGACCAATCAGAGCGCGAAGTGAAAggtcaggaggaggaggagggtgacaGCCACATTGACAGCAACAAGAACCAGGTTAAACAGGAGACGGACACAGCCCTGATCAGTGAGCTGCAGGACCTTCTGTTGGAGGCGAGGGACAATGCTTGCAGGACGCAGGAGGAACTGTCTGTGGAGAGGCAGGAGGAACTGTCTGTGGAGAGGCAGGAGGAACTGACTGTGGAGAGGCAGGAGGAACTGACTGTGGAGAGGCAGGAGGAACTGACTGTGGAGAGATGGGATCACAGAGGCCCCACCCACAGCAGCTCACAGACATTCACACAGctGCAGGAGGAGCACCAGAAGGCCCTAACGAGAAGGGACTTCCAGCTACAGAGTCTGAGTCTGCAGACGCGGCTGCAGCAGAAGTTCTGGAGCCAAGAGAGGAACCTGATGTTGCAGGAGTCCCAGCAACTCAAGCAGACCCTGCTGCTGCTCAGCCTCAAGCTGCGTTGCTTCCTCAAACAGTGGCGGCTGGGACGCAAGCTGGACACGGAGGCCAAGGATGTCCTGGAGGTGAACAGCCTGAAGGACCTGTACCTGCTGTTGGAGGAGGAGAGTCTGGCCGCCCACCCCCAACAGGGAGACAACAAGATTACCTCCGCAGAGGAGCAGCACCTCTGCCCCACCATCTCCAAGGAGCTTTGTGTGCTGGAGAAGAGCTACACACAGACGAGCGGCGTGAGCAGCACACTGGCGGACCTGAAAGGAGCGCTCCAGGATCTGAGCGGAGAGCTGCGAGAGGAGCGCCAGGGCTCACAGGAACTGACCCAGCAGTTTGCCCGCGCTAAGGCCTCctgggaggtggagaggataGAGCTCAAGAGCCTCATTACCCAGCTGGAGAGCAAGGCGGGCTTGGCTGCCCTGGCCGGGGGGGAGAAGGACCTCCAAGGACCTCCCGACCTGAAGGTGGCACTGAAGAGGGAGCGTGAGGAGCACCAGCACCTCCTGGCCGACTCATATGCCGCCGTCATGGACCTGACCAAGCAGCTGCAGATGGGCGAGAGGAACTGGAACCGCGAGAAGCTGGACCTCCTAGAGCATTTCAGTCAGGAGAGGGGCCAGTGGGAGCAGAGGCTACAGTGCAAGATGtctctgCACTACAAAACCATCCCTGAAACAAAAACTGCACTGGACGTTGTTACAAATGGAACCAATTTATCAAGGACCAAGTCCATCCCGTCCATGTTGGAGGGTCTGCTGGAGGCCTGTCCTTTCCTTCCGAGTCAGGAGGTCAATGGTACAGCcaatgaggagggagagaaggaccaGCCCAGCACCCAGGCCCCTCCCCTTCTAACCCACACAGACCCGGGTGACCTCACCAGGAAGAACTGGAAGTACCTGACCAATGAGATGGCTTTGATGGAGCAGGGTGATGCCCCCTTCAAGACGTGGGACTGTCCCAGCTCCCCCAGCAGTTTCCTGGACCTGGAGAGCATCCAGAGGAGCTACACGGCCCCCGACAAGACCGGCATCCGCATCTACTACAGCCCCCCTACCATGCGCCGTATGGAGAGCCGGCTGGCCAAGGAGAAGCAGGACAAACCTCAAGCCCAGCAAGGCCACCTGTCTCGGGCTTCAACTCCCTCAGACGCTGTGGCCCTGGAGGGccaacctccctcctcctcctctgcctcctcctcttcgtCCTATGACCAGTGGTTGAGCTCTCTGTCCAAGCAGCACAGGGACCTTCTGGAGAACAGCAGCGGTGGCGCGGGGGTGGCGCCCTTCCATGGCCTGGAGATCTCTGCCAACCTCTCGGACGACATGAAGGAGATGACCAACTGTGTGCGCCAGGCCATCCGCTCCAGCTCTCTGGAGAGGAATTGCAGCAAGGATGCGAGCAGCCAGACGGTGGGGGTGTCTAGCCGCTCCACCCAGACGGTCCAGTTTGTGAGCGTGGGGCTGCAGACGGACGGGCTCGGGTCTCGGGGGGTGGGGGGCTTCCACACCAAATCCTCCTGGTCCCCCCGGCCCTCGTCATCGCTGGCCTCGGCCCGCTCGCGCCACATCTCCTCATCACTGGATAAGGTGCACAGCCGAATCGACAGGCCCTGCTGCTCACCCAAGTTCGGCTCCCCCAAGCTACAGCGACGCATTTCCGCCTCCTCCTCCAAGCTGGACGGAGGAGGATTGTCCTCGGCTTCATCCAGAGACCGCAGCCTGTGGAACCTCCACCAGCGGTCCTCGACATCCAGCGGCTCGGCCTGGGCCCGTTCTACCACCACCAGGGACAGCCCCGTGCTCAGCGGCCTCAACGATGGCCTGTCCAGCCTGTTCAGCGTGGTGGAACACTCCGGCAGCGTAGAGTCTCTGTGGAAGAGTGAGCCAGGGGCCAGCCCAGCCCGCCAGGCAGCAGGGAAGCCCTCTGGCCCTGGACCAGACACCGGAGCCCAGAAATACGGCCCCTTCCAGGAGTTTTTCAGGAACGTGTGCGGCCGGACCGGAACGACCATGCccgggggaggggagagggggcagagggaggtgggGGCCATGGATGAGCCCAAGCCTGAGTGCCTCTCCGGGGTTTCGCTGGTGGGGAACGACAGCGTCACCAAGATCGTCAACAAGAGGTTCATGAGACAGATGCCCAGGGAGGAGTTGGGGGCCTCTGCTAACGATCTCACTGCCAGGGACCTGACCTTGAGCTCCAGCATGGAGGATGCAGCGTGTGATTGCAACTCCCAGTCTCTTACATCCTGCTTCGCCCGGCCCTCCCGCTCAGCCACACGCCATTCACTGGGCCACTGCATGCACCGCTCTCAGGAGCCTCCCACGGCAACGGAGGAGAGAGTAGATGCAGGCAATGAGTGATGGAtcagtgagaacacacacacacacacacacatactgcctcACCAACACACTGCCACATAAGCTACAGTACTGTCACAAAACATAGACAAAAACACACtgctacatacatactgtacatacacacaatcCCTCACAAACTGCCACACAGAACCACtgtcacatgcacacactcacacacacacacacacacctggaattGGAACTCAACCCAAGCAGCACATTCTAATGCCTCCTAGGATTCCTCTTTGAGCACCAGAACCACTACCAACTACCAGCAGGACAACaaactcacacacaacacacatactgGAACAGTAATGACACACTACTTCCTATATACTGCagtatttagggaatagggtgctattttgcACACAAACAGTTTGTGGAAACGACCACCTAGGAATTCAGACAGTCTTATATGATGTCAGAACTCATAACACTCTACTTTACCTATTTTTGGAATTGCATAGGGAGAACACTGGGCTACTAGATTTCTACAAAGTGGATCTTCCCAACCGACAGGGATATGAGTTGGTTTGTTAGCTGCTCCCATTCCAAATACCAATCCTATTCCCAGTCCAATTCCCTAGCCAGCACCAGTCCCTTCCCAACCCAGCATCTGGAGAGCTCTGTCCAAGCCTCCTCCCTAACACCAAGCAGAGGATTCTACTGGTGTGGACCACCTCTTGCCATAATAACCCAACAACCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1586973 lncRNA downstream 22295 54144807 ~ 54145085 (-) True G1389537
TU1586969 lncRNA downstream 25753 54141216 ~ 54141627 (-) True G1389533
TU1586907 lncRNA downstream 27302 54116463 ~ 54140078 (-) True G1389474
TU1586904 lncRNA downstream 52569 54112674 ~ 54114811 (-) False G1389472
TU1587047 lncRNA upstream 26668 54263604 ~ 54264208 (-) True G1389598
TU1587056 lncRNA upstream 43609 54280545 ~ 54293497 (-) True LOC110492306
TU1587076 lncRNA upstream 77148 54314084 ~ 54314284 (-) True G1389621
TU1587081 lncRNA upstream 94154 54331090 ~ 54331302 (-) True G1389626
TU1587089 lncRNA upstream 107209 54344145 ~ 54344470 (-) True G1389634
XM_036945764.1 mRNA downstream 199245 53958415 ~ 53968135 (-) True commd7
XM_021564407.2 mRNA downstream 199254 53956911 ~ 53968126 (-) False commd7
NM_001165191.2 mRNA downstream 199285 53957921 ~ 53968095 (-) False commd7
XM_036947269.1 mRNA downstream 248033 53776878 ~ 53919347 (-) False LOC110491103
XM_036947268.1 mRNA downstream 248037 53776878 ~ 53919343 (-) False LOC110491103
XM_021566517.2 mRNA upstream 43409 54280345 ~ 54456016 (-) False LOC110492306
XM_036945787.1 mRNA upstream 398449 54635385 ~ 54635876 (-) True LOC118936330
LOC110491107 mRNA upstream 402535 54639471 ~ 54640714 (-) True LOC110491107
XM_036947320.1 mRNA upstream 718926 54955862 ~ 54957989 (-) False si:dkey-20d21.12
XM_036947321.1 mRNA upstream 718926 54955862 ~ 54957989 (-) False si:dkey-20d21.12
TU1585952 other downstream 434465 53730337 ~ 53732915 (-) True LOC110492299
TU1585503 other downstream 1134459 53031932 ~ 53032921 (-) True G1388236
TU1585247 other downstream 1595073 52571710 ~ 52572307 (-) True LOC110492250
TU1585179 other downstream 1738621 52418876 ~ 52428759 (-) True spen
TU1583828 other downstream 2177385 51983134 ~ 51989995 (-) True LOC110492226
TU1587231 other upstream 307792 54544728 ~ 54545243 (-) True G1389763
TU1587517 other upstream 747882 54984818 ~ 54986263 (-) True G1390030
TU1588497 other upstream 1587223 55824159 ~ 55826631 (-) True LOC110492352
TU1589255 other upstream 1827567 56064503 ~ 56064862 (-) True G1391586
TU1589295 other upstream 1988478 56225414 ~ 56226061 (-) True G1391624

Expression Profile