RNA id: XM_036945787.1


Basic Information

Item Value
RNA id XM_036945787.1
length 492
RNA type mRNA
GC content 0.57
exon number 1
gene id LOC118936330
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 54635385 ~ 54635876 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAGAGCTAGCCACATTCATGCTTGAGGTTCTGGGCCCGTATGCCGTCAACGTGACCACAGCCGTTTATCTATGCCAGGGGCGTGGCCACTGCTTGCGCCACAAATCCAAGAGCTCCGCCTACCTGCACCTGCCGCCCTCCAACTTTCTGATgacagagaggaaggtagagatgGTGCAGGTCACGGACCAGCTGGACCCTGGCAACCTGGAGGCCTGGAAGAGGGACTTAAAGTGCCAGTGTTATGAGTCCCTGGAGGGGCCAGTCACCGATGAGGTCCTCAAGGACAGGGCTGAGGTCAGGGCACGGAGTGCCCTTCCAGCCAGACTGAATCCCCCCTTATTGAGTGAGCTGAACCAGGGAACCAGCCCCACCTTCGCTCTCTTGAACCACAGTGGACCGTCACTCACTGCACCTCTCCTACCTCTACTGCTGGTATTAACCACAGCTTTAAGCCTTAGCCTGAACACAGACTTATGCCTGAACTCCTGA

Function

GO:

id name namespace
GO:0003824 catalytic activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1587250 lncRNA downstream 55559 54579622 ~ 54579826 (-) True G1389777
TU1587241 lncRNA downstream 66095 54568591 ~ 54569290 (-) True G1389771
TU1587240 lncRNA downstream 67021 54568143 ~ 54568364 (-) True G1389770
TU1587235 lncRNA downstream 68817 54561502 ~ 54566568 (-) True G1389766
TU1587239 lncRNA downstream 79314 54552120 ~ 54556071 (-) True G1389769
TU1587312 lncRNA upstream 34150 54670026 ~ 54700613 (-) True G1389837
TU1587317 lncRNA upstream 45455 54681331 ~ 54682335 (-) True G1389841
TU1587337 lncRNA upstream 75301 54711177 ~ 54718477 (-) False G1389861
TU1587338 lncRNA upstream 75301 54711177 ~ 54718477 (-) False G1389861
TU1587339 lncRNA upstream 75301 54711177 ~ 54718477 (-) True G1389861
XM_021566517.2 mRNA downstream 179369 54280345 ~ 54456016 (-) False LOC110492306
XM_036947295.1 mRNA downstream 398449 54167380 ~ 54236936 (-) False LOC110491105
LOC110491107 mRNA upstream 3595 54639471 ~ 54640714 (-) True LOC110491107
XM_036947320.1 mRNA upstream 319986 54955862 ~ 54957989 (-) False si:dkey-20d21.12
XM_036947321.1 mRNA upstream 319986 54955862 ~ 54957989 (-) False si:dkey-20d21.12
XM_036947324.1 mRNA upstream 530887 55166763 ~ 55209300 (-) False sema3b
XM_036947323.1 mRNA upstream 530887 55166763 ~ 55255351 (-) False sema3b
TU1587231 other downstream 90142 54544728 ~ 54545243 (-) True G1389763
TU1585952 other downstream 902470 53730337 ~ 53732915 (-) True LOC110492299
TU1585503 other downstream 1602464 53031932 ~ 53032921 (-) True G1388236
TU1585247 other downstream 2063078 52571710 ~ 52572307 (-) True LOC110492250
TU1585179 other downstream 2206626 52418876 ~ 52428759 (-) True spen
TU1587517 other upstream 348942 54984818 ~ 54986263 (-) True G1390030
TU1588497 other upstream 1188283 55824159 ~ 55826631 (-) True LOC110492352
TU1589255 other upstream 1428627 56064503 ~ 56064862 (-) True G1391586
TU1589295 other upstream 1589538 56225414 ~ 56226061 (-) True G1391624
TU1589358 other upstream 1645176 56281052 ~ 56293472 (-) True LOC110492371

Expression Profile