RNA id: TU1587781


Basic Information

Item Value
RNA id TU1587781
length 1260
lncRNA type sense_over
GC content 0.38
exon number 1
gene id sema3b
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 55166763 ~ 55255352 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGATATTGAGTCATTTCATCTTACCGTCCAAATGGAATGGAATGCAGCCGGCTGTACACTCATGTCCCACGTCGACCTGTTCCTACataaaacattctccattcaggctACAAATGTATACATTTCATCCTTAACTTGACTTAATGGTGAGAAAGCAGATAGAAATAGGGAAAATATGCATACTTTATGAAACACCATTTTAATGCTAGTCCTGGATGATGCATATCGTGTTTAGCCAATCAGGTTGCAGCAATACGCAACATCCAAATAtaataaaatcaaattgtattggtcacataaacatatttagcagatgttattgtgggtgtagctaaatgcttgtttctagctccaacagtgcagtaatatctcacaattcacaacaatacacacaaatctaaaaggaaaataatggaattaaggaatatataaatattagtacTAATATTTAGCTACTCTACCATGATGGTGGAAAATAGTGTTTCATAGTGAAAGTACGCATATCTTCCCTGTtttttctctctaccttctcgcaATGAAATTGGGTTAAGGAGAAAATGGACGCCGTGgcagcctgaatggagaatgttttatGTACGATCCGTTGCAGGGGGATGGGAGTGTGTACATTCCCTGTGGATGGTAGGATGAAACCACTCAATATCGCCATGTGCCGGCCTTTGGGCTACTTCTGAGAGGTGCGACTGAGTTGAGAAAGCACAATGTCAATATGGTTATGCTATGTATTTATGTGTGCAGATAAGCTAATATGATGTGGaggatttttttgttttcttgtagagactaagggctctattcaatctgtattgctGAAGTGGGAGAGTTTGCACACTATAAATGTTAAGGCAGTTTCCGATTGAgctgcctttaaatttcaatcacgctgtaacgcTGTACTTCtgtgatacagattgaatagagcgcTTATATTTGTACCATAGGCCTACACATTCTCCCAAAAATACCATAATTTTAAAAATCTTTCTGTAAATGTTGCTATTCCTTGCTATGTTACGCACCCCAACATTAtttctgagagagaaagagtgtgtgtgtctgtgtgcgtgcgtgagtgtttTGTGTATATTTGGGGGAAAGGAGAGCTGATATTGGTTTTAAGGAGGAGAGGTGGTCTGTGAAGACAGTTCAAAGTTCAAGGCCAAAGTTGACATGGTGCACTGTATTACTTCCAAAGTTCTTTGTGGATTGTTATGTCAGATTGTttttaacacaataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1587779 lncRNA downstream 3911 55162523 ~ 55162868 (-) True G1390253
TU1587778 lncRNA downstream 6129 55160368 ~ 55160650 (-) True G1390252
TU1587746 lncRNA downstream 23537 55142909 ~ 55143242 (-) True G1390242
TU1587745 lncRNA downstream 24290 55142208 ~ 55142489 (-) True G1390241
TU1587744 lncRNA downstream 26356 55140080 ~ 55140423 (-) True G1390240
TU1587833 lncRNA upstream 102153 55270191 ~ 55270431 (-) True G1390301
TU1587835 lncRNA upstream 107543 55275581 ~ 55275802 (-) True G1390303
TU1587844 lncRNA upstream 120673 55288711 ~ 55288981 (-) True G1390312
TU1587880 lncRNA upstream 148562 55316600 ~ 55316859 (-) True G1390346
TU1587884 lncRNA upstream 149629 55317667 ~ 55317975 (-) True G1390350
XM_036947320.1 mRNA downstream 208790 54955862 ~ 54957989 (-) False si:dkey-20d21.12
XM_036947321.1 mRNA downstream 208790 54955862 ~ 54957989 (-) False si:dkey-20d21.12
LOC110491107 mRNA downstream 526065 54639471 ~ 54640714 (-) True LOC110491107
XM_036945787.1 mRNA downstream 530903 54635385 ~ 54635876 (-) True LOC118936330
XM_021566517.2 mRNA downstream 710763 54280345 ~ 54456016 (-) False LOC110492306
XM_021566550.2 mRNA upstream 182106 55350144 ~ 55372295 (-) True actr8
XM_021566552.2 mRNA upstream 207697 55375735 ~ 55383019 (-) False LOC110492331
XM_021566555.2 mRNA upstream 207697 55375735 ~ 55383019 (-) False LOC110492331
XM_036947326.1 mRNA upstream 207697 55375735 ~ 55383019 (-) False LOC110492331
XM_036947327.1 mRNA upstream 207697 55375735 ~ 55383021 (-) True LOC110492331
TU1587517 other downstream 180516 54984818 ~ 54986263 (-) True G1390030
TU1587231 other downstream 621536 54544728 ~ 54545243 (-) True G1389763
TU1585952 other downstream 1433864 53730337 ~ 53732915 (-) True LOC110492299
TU1585503 other downstream 2133858 53031932 ~ 53032921 (-) True G1388236
TU1585247 other downstream 2594472 52571710 ~ 52572307 (-) True LOC110492250
TU1588497 other upstream 656121 55824159 ~ 55826631 (-) True LOC110492352
TU1589255 other upstream 896465 56064503 ~ 56064862 (-) True G1391586
TU1589295 other upstream 1057376 56225414 ~ 56226061 (-) True G1391624
TU1589358 other upstream 1113014 56281052 ~ 56293472 (-) True LOC110492371
TU1589476 other upstream 1256234 56424272 ~ 56437279 (-) False G1391796

Expression Profile