RNA id: XM_021566572.2


Basic Information

Item Value
RNA id XM_021566572.2
length 1583
RNA type mRNA
GC content 0.49
exon number 13
gene id LOC110492339
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 55633814 ~ 55638471 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCTGTGCAGCGCGTCTGCAATGAATACTACCTGGAACCCGCCCTACATTGCCGACGCATGTGCAATGAAAGCACTTCCTTTTCCGCTCATTGCGCTGCGTTTTCTTCTTCAACCAAGCTTCTCCTCAACGTAAAAAAAAGATCACTAACCGCGTGTTGGCTCAAGTGAATCCGACGTCATGAGTTTGTTCGGGGCCAGCACTGGCTTTGGCGCTGGGGGATTTGGAGCGGCAACCACGGACACCCACAACCCAATGAAGGATGTGGAAGTAACCTCACCCCCAGATGACAGCATCAGTTGCTTGGCGTTCAGTCCTCCTGCCATGCCAGGGAACTTCTTGATAGGGGGATCCTGGGCCAATGATGTGAGGTGTTGGGAGGTACAGGACAACGGGCAGACAGTCCCCAAAGCCCAGCAGATGCACACGGGTCCCGTCCTTGATGTCTGCTGGAGCGAAGACGGTAGCAAGGTTTTCACTGCGTCTTGTGACAAGACTGCCAAAATGTGGGACCTCAACAGCAACCAGGCAATACAGATCGCACAGCATGATGCTCCTATCAGAACAGTCCACTGGATCAAAGCCCCCAACTACAACTGCATCATGACAGGCAGCTGGGACAAAACTCTGAAgttctgggacACCCGCTCGCCCAACCCAATGATGTCTCTGCAGTTGCCAGAGAGGTGCTACTGTGCAGATGTGGTGTACCCCATGGCAGTGGTAGCGTCTGCAGACCGAGGTTTGATTGTATATCAGCTTGAAAACCAGCCGTCTGAGTTTAGGAGGATAGACTCACCACTCAAACACCAGGTGACTGGTCTCACATACCAGCACCGCTGCATAGCCATTTTTAAGGACAAACAGAACAAGCCTGCTGGATTTGCTCTCGGAAGCATTGAAGGGCGGGTTGCAATTCACTACATCAACCCTCCTAACCCAGCCAAGGATAACTTCACCTTTAAGTGCCACAGGTCGAATGGAACCAACACAGCCACACCACAAGACATCTATGCTGTAAATGCCATCTCCTTCCACCCTGTCCACGGGACACTGGCGACTGTTGGGTCAGATGGTCGCTTCAGCTTCTGGGATAAAGACGCCCGCACCAAGCTGAAGACCTCAGAGCAGCTGGATCAGCCAATCACAGCATGCTCCTTCAACAACAATGGCAACATCTTTGCTTACGCCTCCAGCTATGATTGGTCAAAGGGACATGAGTACTACAACCCTCAGAAAAAGAACTACATCTTCCTGCGTAATGCTACTGAGGAGCTGAAACCACGGAACAAGAAATGATTTGTCCAGTATCTCGCCTGTTGTTTGCAAAATGGAGGGTTGTCAAATGCACACGTCATGCCTGCACGACCCTGTTCCTTTCCTGTGCCAACACCAAAGGTGGAGCTGGTGCTTGCAAAATAGGGGTTGCAGAGTGATAAGATATTGTTTTGAAATATCTATTTTATTTTGTCACGATACCATGGTTGCATTTaaagtaatgtttttttttctgttaCGTTGTTGTACAATTTAACGATATTGGAGAATGACATAAATGAGTAGATAAAGACAAGTTACACTATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1588385 lncRNA downstream 19847 55602174 ~ 55613967 (-) True G1390797
TU1588364 lncRNA downstream 52913 55580207 ~ 55580901 (-) True G1390777
TU1588359 lncRNA downstream 58511 55574956 ~ 55575303 (-) True G1390772
TU1588358 lncRNA downstream 59006 55574529 ~ 55574808 (-) True G1390771
TU1588330 lncRNA downstream 66017 55566446 ~ 55567797 (-) True G1390745
TU1588406 lncRNA upstream 28036 55666507 ~ 55666872 (-) True G1390817
TU1588407 lncRNA upstream 28657 55667128 ~ 55667643 (-) True G1390818
TU1588431 lncRNA upstream 76771 55715242 ~ 55715658 (-) True G1390841
TU1588435 lncRNA upstream 81061 55719532 ~ 55719754 (-) True G1390845
TU1588440 lncRNA upstream 89044 55727515 ~ 55727835 (-) True G1390850
XM_021566575.2 mRNA downstream 909 55626915 ~ 55632905 (-) True LOC110492341
XM_021566568.2 mRNA downstream 7079 55609187 ~ 55626735 (-) True LOC110492338
XM_021566567.2 mRNA downstream 7147 55609187 ~ 55626667 (-) False LOC110492338
XM_021566570.2 mRNA downstream 9503 55609187 ~ 55624311 (-) False LOC110492338
XM_021566566.2 mRNA downstream 26490 55595569 ~ 55607324 (-) True LOC110492337
XM_021566577.2 mRNA upstream 7674 55646145 ~ 55649413 (-) False LOC110492342
XM_021566578.2 mRNA upstream 7674 55646145 ~ 55649415 (-) True LOC110492342
XM_021564388.2 mRNA upstream 32993 55671464 ~ 55679618 (-) False LOC100170209
NM_001129988.2 mRNA upstream 34314 55672785 ~ 55692812 (-) True LOC100170209
XM_021566582.2 mRNA upstream 103797 55742268 ~ 55745483 (-) False LOC110492344
TU1587517 other downstream 647551 54984818 ~ 54986263 (-) True G1390030
TU1587231 other downstream 1088571 54544728 ~ 54545243 (-) True G1389763
TU1585952 other downstream 1900899 53730337 ~ 53732915 (-) True LOC110492299
TU1585503 other downstream 2600893 53031932 ~ 53032921 (-) True G1388236
TU1585247 other downstream 3061507 52571710 ~ 52572307 (-) True LOC110492250
TU1588497 other upstream 185688 55824159 ~ 55826631 (-) True LOC110492352
TU1589255 other upstream 426032 56064503 ~ 56064862 (-) True G1391586
TU1589295 other upstream 586943 56225414 ~ 56226061 (-) True G1391624
TU1589358 other upstream 642581 56281052 ~ 56293472 (-) True LOC110492371
TU1589476 other upstream 785801 56424272 ~ 56437279 (-) False G1391796

Expression Profile