RNA id: XM_021566584.2


Basic Information

Item Value
RNA id XM_021566584.2
length 1973
RNA type mRNA
GC content 0.45
exon number 17
gene id LOC110492346
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 55755130 ~ 55769029 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTCACTTTACAATGAAACAGGAAGTTAATAGACTATATATAAATATCACATGATTTGAGCACAGTCCCAAATCAGACCTACAGCCATCTATCTACACTAGAGCTAATAATCAACCTAGggtgttaagcatgttatCCCTCCTAATACTTCTGCTGAATCTTACCAATCATGCTTTTGGACAAAATCCTGCAATAAAGGCCATATTGTCAAATAAAGGACTTCAATATGGGTCACACATTGGGGCTGATTGGATGCAGGAGAAGATAGGTAGTGTGATCATACCAGATGTCAGAGGTGGTGTTGACATTGGTATAGGAACGGTGCACTACGTCCTTGACGGAATCTCAGTGTCTGGGTGTGATGTTCCAGAGCCTTCAGTGGAGTTCTATGAGGGCGTGGGACTCAAGGCTGTGATCAGTGGCCTCAGCATTTCAATGAGTGGAAATTGGCACACACGTTTTGGCATCATAACCGATGGTGGCTCATTTGACCTGGCAGTGTTCAATGTGGACGTGACCTCTGTGGTGCAGATAGGAAGTGATCAGAGTGGACACATTTCTATCTCCAGCGAAAACTGTGATGCCAGTGTCGGTGAGGCATCAATCAATTTCCATGGAGGAGCCAGTTTGATCTTCCAGCCATTTGTGAGCCTTTTCCACCATCGCATTAAAGCTATAATTGAGGAAAGAATCTGCccattggttgaagagcatgttaCCGATTTGGAGCGACATCTATCAGAAATGCAAGTGTCCTTCAAGGTCAATTCTGCTCTAGTTTTGGACGTCCCCCTCACTAACTCACCCCTCGTCGATTCTATTAGCCTTGGTCTGGATTTGAAGGGTGAGTTCTACAGTGTTCAGAGTCACACAGATCCTCCTTTTAAGGCCGAGCCTTTTAATCTGCCAGAGGACAAAGGCCACATGCTCTCCCTGGGCCTGTCTGAATTCACTGTCAACTCTGCCTCCTATGCTTACTTCTCCGCTGGACTCCTGCAGGCCCAAATAAACGACagcatgATCCCCAAGACCTCTCCTTTCCGTCTCAACACAACCTCCTTCGGGCCTCTCATCCCTCAGCTTCCCAAGCTCTTCCCCAACATGCTGATGGAACTGCAGGTGTATGCCAGGAACGTTCCAATATTTTCCTTCCAGGCTGATAAGGTTACAATGGAATTTCCAGGTGCTGTTAAGGCCTTTGCCATCCAGCCAAATGCTTCACGGACTCCACTGTTCAAGCTCAATGTTGACTCCATTTTTAGTGGGATGATACGCATTTCAGAAGAGAAACTCAAAGGCTTGGTGGAACTAAGCAATTTTACCCTGACACTTGCATCAAGTGAAGTGGGAACATTCCAGACTGCAGCCCTGGAAAAGTTTATGAAGCTGGGGATGAAGATTACAGTGTTAGCTAAACTGAACGCCAAACTGGAGGAGGGCATTGTTTTACCCACCATGCACCACATCCATCTGGTTAACCCTGCGCTGAAGATCCAGCAGGGATTTGTGTCCATTGCATCAGACCTTGATGTTAAATCTGGCGAGGGAGAGAGCCTTTCTGAAGGGATTTACCATTACCGACTATATGCAGGTGACATTTCCACCTGGATGACAGCACATAATTAGCAAGACGGAGATGCTCTTCATCCGAGGGAATGCCTGCCCATTCTCAGAAATGAGATCATCTGAGATGATCACGTCGTTTACATTCCAGTCCTTGTCAGCTCCATATTTGACGACTTCAACTCACACCCTGTTGGAATCTCTGCATTATCAGATTCGCCTCTGTTATTAATCTCTATATTGTAATCAAAAAAAGTGTTTCAAAATGCTGTACTTTTATTAATATATATGTTCAGATCATTCTTGAGAAATAAGGGGTGTAATATCTCCAGATGGGTGTGTGGttgtcatgccctggccatagagagacttttattctctattttggttaggccagggcgtgactagg

Function

GO:

id name namespace
GO:0008289 lipid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1588453 lncRNA downstream 7641 55747048 ~ 55747489 (-) True G1390863
TU1588452 lncRNA downstream 8615 55746277 ~ 55746515 (-) True G1390862
TU1588377 lncRNA downstream 9864 55742140 ~ 55745266 (-) False LOC110492344
TU1588376 lncRNA downstream 9864 55742289 ~ 55745266 (-) True LOC110492344
TU1588446 lncRNA downstream 21757 55733173 ~ 55733373 (-) True G1390856
TU1588463 lncRNA upstream 7124 55776153 ~ 55777082 (-) True G1390873
TU1588467 lncRNA upstream 12217 55781246 ~ 55781400 (-) True G1390877
TU1588466 lncRNA upstream 12500 55781529 ~ 55781881 (-) True G1390876
TU1588480 lncRNA upstream 29188 55798217 ~ 55804675 (-) True G1390888
TU1588491 lncRNA upstream 42616 55811645 ~ 55813087 (-) True G1390893
XM_021566582.2 mRNA downstream 9647 55742268 ~ 55745483 (-) False LOC110492344
NM_001129988.2 mRNA downstream 62318 55672785 ~ 55692812 (-) True LOC100170209
XM_021564388.2 mRNA downstream 75512 55671464 ~ 55679618 (-) False LOC100170209
XM_021566578.2 mRNA downstream 105715 55646145 ~ 55649415 (-) True LOC110492342
XM_021566577.2 mRNA downstream 105717 55646145 ~ 55649413 (-) False LOC110492342
XM_021566585.2 mRNA upstream 14779 55783808 ~ 55787739 (-) True LOC110492348
XM_021566592.2 mRNA upstream 55126 55824155 ~ 55826646 (-) False LOC110492352
XM_021566593.2 mRNA upstream 75656 55844685 ~ 55847496 (-) False LOC110492353
XM_036947334.1 mRNA upstream 116354 55885383 ~ 55888359 (-) True LOC110492354
XM_036947337.1 mRNA upstream 127157 55896186 ~ 55908027 (-) False LOC110492355
TU1587517 other downstream 768867 54984818 ~ 54986263 (-) True G1390030
TU1587231 other downstream 1209887 54544728 ~ 54545243 (-) True G1389763
TU1585952 other downstream 2022215 53730337 ~ 53732915 (-) True LOC110492299
TU1585503 other downstream 2722209 53031932 ~ 53032921 (-) True G1388236
TU1585247 other downstream 3182823 52571710 ~ 52572307 (-) True LOC110492250
TU1588497 other upstream 55130 55824159 ~ 55826631 (-) True LOC110492352
TU1589255 other upstream 295474 56064503 ~ 56064862 (-) True G1391586
TU1589295 other upstream 456385 56225414 ~ 56226061 (-) True G1391624
TU1589358 other upstream 512023 56281052 ~ 56293472 (-) True LOC110492371
TU1589476 other upstream 655243 56424272 ~ 56437279 (-) False G1391796

Expression Profile