RNA id: XM_021566596.2


Basic Information

Item Value
RNA id XM_021566596.2
length 2268
RNA type mRNA
GC content 0.44
exon number 13
gene id LOC110492355
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 55896186 ~ 55908040 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GctgtctcactcactcaaacTGATGCCTGCCTTTAcagtccctcactcactcacccctctgctctaaccactaaccatTGGATCGCTTTTTGGAATTTACCTGCATGAACCTGAAAAGGGAAATATCAAGAGTTGGAATGGTTCGGAGGCCTCCGGTGTGACAGGTTGCTCATCACACATGAAAGCAAACTGGTGAAGAAAGCCTTTACCATACATCCACATACCAGATTTCATTTCTTCATTGACTGGACTAGCAACCAGTAGGAACAAGTGGGTAGCACTGCAGGACGAACGTGAGAGCTCACACACTACACCATGGCCCAATATGACCAACTTGAAGATAAACATTCTGTGGATATCCACGATAACCCCACAGCCCCTGACAATATTGTGAAAGAAGAAGACAATACTGTATACTTTATttatgaggaggaggtggaagtggaggagaaggagcctgagcctgagcccgTTGTTATATTGGTGAATGACAAACCACACAAGTTCAAGGACCACTACTGCAAGACGCCCAAGTTCTGTGACGTCTGTGCTCGTATGATAGTCCTCAACAACAAGTTTGCTCTAAGGTGCAAAAACTGCAAGACCAACATCCATCACTCATGCCAGTCCTATGTCGAGTATCAGAAGTGCTTTGGCAAAATTCCCCCAGGTTTCAGAAGGGCCTACAGCTCCCCTCTATACAGTAGTGACCAAACAGATGCAGCCCACTCCAACCGTAACGACCCTGTGTTTGACACCCTGCGGGTTGGGGTCGTCATGGCAAACAAGGAGCGCAAGAAGGGGTCTGAGGACAAGAAGAATatgatgatgatgatgatggaggaAGAGGAATCGCAACAACCCAAAGAAGACGAGCAGGCAGAAGGAAAGCCAGAGGGGGATAAGAAAGGAGACAAGGCTGACAAAGCAGATGACAAGAAAAAGAAGGAGATGGGAAACATGGGAAATCAGTCACATTACTACCTGGCTCTGTATCGCTTCAAGGCTATTGAGAAAGACGACCTTGACTTCCATCCTGGTGATCGAATCACTATAATTGATGATGCAAATGAGGAATGGTGGAGGGGGAAGAttggggagaagacaggttaccTCCCCACAAATTACATCATTAGAATAAAAACGGGAGAGAGGGTGTTCAGGGTGACACGCTCCGTCGTGGGAAACAGAGAGATGGGTCAGATAACACTGAAAAAAGACCAGATCGTGgtgaagaagggagaggaggtgaaTGGCTACTTGAAGGTCAGCACAGGCCGCAAGCTGGGCTTCTTTCCCACTGACCTGCTCCAGGAGATCTGAGCCTGACCGGATCACAACCACAGGTCTAGAGTCACACCGTCACCAGGACCATAACCACATAACACCAAACCCAAGACCTAAACACATGATCACAACATTTTCTAACACAACATTTACACAAACACTTGTATTTTCCACTTTTAGGGGCCTATAGAGCTGATCTGGTGAATGTGTAAGCTGTTTGAACTCTGTAAATTGTGTTGAGTGTAACTtaatactgtagcctacccacCCTAGTGAACTGGATCAGCTATCTATGCAATCCGAGCTGGACAGAGACGTGTGACGTAGGACCAGGAGTGTGTGGTGGACACCTAAAAAGTGAACATGTTTGTGCCATTTTAATGTGATCAAAACCGGACAACCTGAAACTACATCTTCAGAAACTTGAAGCAAAAAAAGTTTCTAAACCCAATGGCTGTAACTACTGACTGTATCTATTAAGTAACTAGGATTTTACATTGTTTTTGTTGTGCAAACCTAATTGTCTTGGAGGCTAATGTATTGCTTACTCTTATTGTAGTAGTTCCTTTTTTATATATAGTCAGCTGAAATTCTAGTGCTTCATTTTCCCCTTGATGCAAATGTTCAAGAGGGCTTGTTAAAGTGCATGTTGTAATTTTATTTTAGCTTGGGCCGGTCTTTTAACATCTTTAACATACCAGTGTGCTGTGTATTCGTTGTATTTTTTAGAGCAATAGACAATGTAAGCCTGGCTGACAGAGACCCACAAACTTTTGCCAGACAAATGAAGTTGAAATCATTGATACAATATTGTAACATTACGCAACAGTCCTTTGTTATGAATTTACTATTTAAGTACTAACAGTGGAGTGCAGGCTTTTCCCATTTATTGTCTTACTTGATATGCATCCTCTGTGACACCATCATAGTGGTGAAATCAATTCACAATTCAAAATAAAGTCCTCTATTTTTGAATCAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1588512 lncRNA downstream 47799 55848160 ~ 55848387 (-) True G1390914
TU1588498 lncRNA downstream 48751 55844681 ~ 55847435 (-) True LOC110492353
TU1588491 lncRNA downstream 83099 55811645 ~ 55813087 (-) True G1390893
TU1588480 lncRNA downstream 91511 55798217 ~ 55804675 (-) True G1390888
TU1588466 lncRNA downstream 114305 55781529 ~ 55781881 (-) True G1390876
TU1588703 lncRNA upstream 5597 55913637 ~ 55915767 (-) True G1391086
TU1588718 lncRNA upstream 21966 55930006 ~ 55933691 (-) True G1391097
TU1588724 lncRNA upstream 35136 55943176 ~ 56001631 (-) False G1391102
TU1588726 lncRNA upstream 35136 55943176 ~ 55946403 (-) True G1391102
TU1588736 lncRNA upstream 78920 55986960 ~ 55991650 (-) False LOC110492360
XM_036947334.1 mRNA downstream 7827 55885383 ~ 55888359 (-) True LOC110492354
XM_021566593.2 mRNA downstream 48690 55844685 ~ 55847496 (-) False LOC110492353
XM_021566592.2 mRNA downstream 69540 55824155 ~ 55826646 (-) False LOC110492352
XM_021566585.2 mRNA downstream 108447 55783808 ~ 55787739 (-) True LOC110492348
XM_021566584.2 mRNA downstream 127157 55755130 ~ 55769029 (-) True LOC110492346
XM_021566605.2 mRNA upstream 47000 55955040 ~ 55965473 (-) True LOC110492359
XM_021566606.2 mRNA upstream 78164 55986204 ~ 55998074 (-) False LOC110492360
XM_021566607.2 mRNA upstream 78164 55986204 ~ 55998074 (-) False LOC110492360
XM_036947343.1 mRNA upstream 101148 56009188 ~ 56036787 (-) True LOC110491116
XM_036947344.1 mRNA upstream 168163 56076203 ~ 56077981 (-) False LOC110492365
TU1588497 other downstream 69555 55824159 ~ 55826631 (-) True LOC110492352
TU1587517 other downstream 909923 54984818 ~ 54986263 (-) True G1390030
TU1587231 other downstream 1350943 54544728 ~ 54545243 (-) True G1389763
TU1585952 other downstream 2163271 53730337 ~ 53732915 (-) True LOC110492299
TU1585503 other downstream 2863265 53031932 ~ 53032921 (-) True G1388236
TU1589255 other upstream 156463 56064503 ~ 56064862 (-) True G1391586
TU1589295 other upstream 317374 56225414 ~ 56226061 (-) True G1391624
TU1589358 other upstream 373012 56281052 ~ 56293472 (-) True LOC110492371
TU1589476 other upstream 516232 56424272 ~ 56437279 (-) False G1391796
TU1589480 other upstream 516232 56424272 ~ 56437279 (-) False G1391796

Expression Profile