RNA id: XM_021566605.2


Basic Information

Item Value
RNA id XM_021566605.2
length 4722
RNA type mRNA
GC content 0.49
exon number 7
gene id LOC110492359
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 55955040 ~ 55965473 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTCGTCACCATTTTATCCCCATTTACAAACCACACATATTGATGGTGGTAAATACATCTATTTTTATTTGAGAAAAATATAAAAACGTTTATTTTGGCGGTGCTTACTCTAAGGCGGCCATATGAACAATAAGACAAACgcatgtagctagctaagcaaTCTGTTTTATTTTTCTTGAATAACGTGGTATTTGTTATTCCTTTTCTGTACATTGACAGTATAATGGTCTTGTATCTGTGTTAAACGATAGCAGGGAGTATAATAGAGGCAAAGCCACTGATGTGAGAGTAATTTGACCAGATGGCCATGCAGTGTTAGCTCATTCCTGGGAAAATAGCAGAGTATGTCTGGGCAAAAGCTATTATTCAGAATGGTGATGGAGAAATCCACATAGGCCTACAATAATTATAGGTTTCACTTGTATAATCGAATTTCCTCCCCAAAACTGAAAGGAGTCTATGATGTAACAAAGTATATGAcgtaatttattattattattatgttagtGTGTTTCAAAGTTCTCCGTTCTGAAAGAATGAGACTTTGCCTCGGCTTCATCAAAAAGGTGTATTTTTTGGTActtaatgtgtatttatttaaagagccCATGAGATAAATAGGAGATTATATCATATCTATTTTTCTTTCAAAAGTATAtctatttgtatttatattttcagAGAAATAGTTATTTATCATAGGGGAAAATGGAGGAGAAACCAACTATGAGTGATATCGATTTGGACAAGATCCTTTCTACACCTCAAGAAGTACCACATTCCGTTGAGGTGGTACTGAGGAAATTGGAAATTGCTGAAATGGGTCGAGCTAAACGAGACATGGCAGGGAGACTGCACGTGATCCTGAACAGTGTAAACAAGGCGCTGTGCCGCATGCGCTTGGCCTCggctgtagaggaggaggatgatgaccTGATAACACAATCACAGCATCTGGAGGAGAAGCGCAGGCGTGGCCAGCAGCTCGTCACTATCCAAGCATTCCTACAGTCCAGCCTGGACAAGGAAAATGAGCTCAGCGTGGTCCTCCAGTGGCTCAGAAACATGAACCAGGagctggtggaggtggaggaggacgaGGACTTCCGGGAGGTGGATGGTATCACTGAGGAATGGGTTGAGGAGATGCAAGACAAGATCCAGAGTTTCATGTCGGACATCCAAGCTTGCATTGTACGTCTTCACGAGCTTTGTGGATTCCTCTTTGAACTCGACACCAGGAAAACCAAAAAGAAAGAAGCAGAACATAAGAAGGGAGGTGTGTGGCACTGGTGGCTGGAGTCAAAAGTCGATGCCAGGACGATACTGAAGATCCAGGAGCTGCAGCCGCCCACAGTGGACCGCATGATGGCGGAGCCCAGCCTGGCCACCAAGTCTTCCACAGATCTGTCCTTCATGCTGGGCGACATCTCCAAGTCCATGTCCTGCAACAAGGCCATGAGCATGGCCTTTAAGTTCATTCAGACGGGGCTCCACAACCTAAACGAGGCTCTGCAGGAGCGCACAGGCGAGGCCCACAAAGCCCAAGCCCAACTGGATGAGATGAAGGCTGATGACTGCCGTGCTAACCTGGCCCGTGCCAAAGCAGAGCTGGAAGGGGGCAAGACAAGGATCACCAAACTGGAGGGAGATAACTATAACCTTCAGGAGGAGATTGCAGCGCACATGTTCCAGATCCACAAGCTGGAGGGGATGGTCAGGTCAGGTCAACAGGGTTCTGTGATTAAAGTGATTGAGCCGATGATGGAATTCCCCATGACTCAGAGCCAAACCCAGCCAGAGAGCACCTCAGTCCCATTCAATCCGAAATATCCCAGATGGCCCCCTCCGTCTAAGAAGGAGCAGAAGCCAAAGATAGCCCCATCAGTGGTGGAATCACAGCTACCCAAGAGCCCACCCAAGACTGCGGCTGGGACGGAGCCAGAGTCCATTGAGGAGGAGTATGTCGAAGAGGAGATACCTCCCACACCTTCCCCTGTGTCTGAAGAGGAGATCAAGCCCGAGCCATCACCTGATGAATTGGACCTCTTTGAGGCCATGGAGAAGAACAGCACCAGCCTCTTGGATGGCTTCCAGTCATCTGTGTTCAACATAATTGAAAAGTCCCTCAGTGTTAAGGGTATAGGCCTAGAGGCAGACAAGGCCAACGATGCCATCAAACTCTACATCATCCTTCAGAAAACCATCCGAGACTCCTTCAACAACATCACCTCCAAACTCCATGGGAAATTTACAGACAGCATCCTGAACATGCCGTTTGAGGAGGACGCCACCAAGTCACCAGGGGACATGCTCAAAGAGATCAACTCTATGTTCGTCAGCCATGACCAGAACATTGAAAGTTTGGGCGCCAATGTGCACATGCTCATGAAAGAAGAAGACAAGAACGCCAAGTCTGCTTCCAAGAAAGGACCCCACCAAGAATGCCGTCACTCTGTGTCTGAGGTCCTGATCCAGTTGAAGAACATCAACAACATGAGCAAGCAGCAGACCTGTAAGATGCGCCTGGCCCTGGAGAACCTCATAGACATGAACAACAGGTTGGATAATGAGCCCAAGACTGAGGAGGAACAGCCATCCACCAGCCATTTCTCCATCTCGTCCTCTGACAGCTTTGTAGAGGAAGAAGAGATCAGAGTGGAGAAGAAACGCCACCACCACATCGAGAAAACTGTCAAAGTACCGGTAGAGAAGCGAATCAAGAGGAGACATACTCCACATCAGACAACGAGGCAAGTACTGAAACCCAGACTTATAGAGACAGCCAACCAGGGGGACATGGAGCGGTATAAGATGGAgattgaggaggaggggaggaagatagAGAAAACGGTGATGGTGGGGGCGACCTACCAGGTGAATGTGGTGTCTCAGAGGACCAACCTGAATCTCCTGAGGCAGGCGGCGATCAGCGGGGAGATCTCCACTGAGCTGTACAGCATGGCCAAGGACCTCATCACACACATTCTGGGCATGGATGAGATTAGACTGGCCTGCCTGCTCCGCAAGTTCATGGCCTACAGATCAGTGCAGCAAGTCCGTTACAATCTGAATATGCAGTTGGTTGCTGCTCGGGAGCTAAAGGATGGACAGTCGGTAAAAGAAATATACTCCTTCCTGACGAAACTGGATGTGTACCAGAAACGGACGTTGCGTCGGTGGAGTGCTAAACAAGCTGCTATTGAACACAGCCGCAAGACCTGCCTTGCTCGCATGCTATATCTTTTCAGTGAGATAAGACAAGACTACAACGTGCACCTGCTCACCCCGTTCCCGTGCTCCAGCCACTCCCGTCAACATCTGGCCATCAAGTCCCACAAGCTGACGTGGTCCCTGAACCCTGGTTGCCAGCGCCGCCACCTGCCCACTCCAGCCCAGACCCCCCACCTGGTGATGCCCGCCTCAGAGGCCGGACCCCTGAGCGGAGTCAGGGAGCTGTTGAGGGGTCAGCTACCCACACTGTGGCATTGTAATCTGACCATGAACAACATGCAGCTGGCCAGGAAGATGGCCTCTCCCCCCTGcaacctctcctccatccccctgctGATGGAGATGGACGTCAACCATAGCCGAGCCACTGCACTGCGCTCTGCACAGGGCAGgatgAGTGGGGGATAGCTGCATGCTTTCTAGAGGAGATGTGTTGATGCATAGGGAGATGATCTACTGAAGGGATCCAGTCTGTCACTAATCTCAAACGCCATCCATTAAAGAATATGTTCACTCCAGCCCCATGCTCCATGCCTCATTTACTCCCACACTGTAGTTTTCAGTGGCGTCACAGGACAGCTGAACAAGCACGTGTGCAAAAGGTACAGTTGTTGAGCTGTCGGGAAGAGGCATCCAGTGAATCCATTCacatagccacatcattttaaAAACCTTGTTGAGAGGGGTTTCCTCTCCCCTTCCATAAGATTTTCCCTCATTGTTTGCCTTGGTATCAGGACTGGACATGGGTTGATTCCTACAGTATGTTAATGCATGCAGAAGTACTGTATATTAGGGGTCTTTAACTGCTTCCTGAAAACCCTATTTGTTAGGTGCCTCCTAAGAAGAGGTAGGTGCacgagtcaggagcaggagagcaaggAATTCCAGTTTGCACAGTCGTTTATTATAAGTCCCAACCCACCAACAACAGGCGGGGAAAATCACGAAACACACGGAGGAGAAACCTCTACTCCTAACACAGTACCAACGGTACAACGACTGTGAGGGGAAAAAAACCCTGTGGCGcaaacacgcacccctaacagagctaacacagcaaaataatcccgcacaaagactAGCAGGCAGTGGAGGTTAATAAACCCACCGAAATTAACTAATCAGACACAGGTgataacaacaacagacagacacaaacgaaaaggaaaaatggatcggtggcagctagtaggccggcgacgacgaccgccgagcaccgcccgaacagggagaggagccaccttcggtggaagtcgtgacactattAGAAGTGTATCTGGCTTTCCAGAGCAGTTCTGAGAATTCACTTTTTTTCTGTTTGCGCACCAGCAGGTGAAGACCGCTTATAGAGCAATTGTTGCAGCAGTAGCACAGTGACTACAAATAATAattcactcacagtcacacacaatataccaatcgaaaatcaaatcaagaatcggctttctattccgcaacaaagcctccttcactcacgccaccaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1588726 lncRNA downstream 8637 55943176 ~ 55946403 (-) True G1391102
TU1588718 lncRNA downstream 21349 55930006 ~ 55933691 (-) True G1391097
TU1588703 lncRNA downstream 39273 55913637 ~ 55915767 (-) True G1391086
TU1588512 lncRNA downstream 106653 55848160 ~ 55848387 (-) True G1390914
TU1588498 lncRNA downstream 107605 55844681 ~ 55847435 (-) True LOC110492353
TU1588736 lncRNA upstream 21487 55986960 ~ 55991650 (-) False LOC110492360
TU1588737 lncRNA upstream 30789 55996262 ~ 55998076 (-) True LOC110492360
TU1588752 lncRNA upstream 41201 56006674 ~ 56008753 (-) True G1391127
TU1589267 lncRNA upstream 120632 56086105 ~ 56086321 (-) True G1391597
TU1589292 lncRNA upstream 258062 56223535 ~ 56223853 (-) True G1391621
XM_021566596.2 mRNA downstream 47000 55896186 ~ 55908040 (-) False LOC110492355
XM_036947336.1 mRNA downstream 47000 55896186 ~ 55908040 (-) True LOC110492355
XM_021566595.2 mRNA downstream 47001 55896186 ~ 55908039 (-) False LOC110492355
XM_036947338.1 mRNA downstream 47001 55896186 ~ 55908039 (-) False LOC110492355
XM_036947339.1 mRNA downstream 47001 55896186 ~ 55908039 (-) False LOC110492355
XM_021566606.2 mRNA upstream 20731 55986204 ~ 55998074 (-) False LOC110492360
XM_021566607.2 mRNA upstream 20731 55986204 ~ 55998074 (-) False LOC110492360
XM_036947343.1 mRNA upstream 43715 56009188 ~ 56036787 (-) True LOC110491116
XM_036947344.1 mRNA upstream 110730 56076203 ~ 56077981 (-) False LOC110492365
XM_021566620.2 mRNA upstream 110730 56076203 ~ 56078192 (-) False LOC110492365
TU1588497 other downstream 128409 55824159 ~ 55826631 (-) True LOC110492352
TU1587517 other downstream 968777 54984818 ~ 54986263 (-) True G1390030
TU1587231 other downstream 1409797 54544728 ~ 54545243 (-) True G1389763
TU1585952 other downstream 2222125 53730337 ~ 53732915 (-) True LOC110492299
TU1585503 other downstream 2922119 53031932 ~ 53032921 (-) True G1388236
TU1589255 other upstream 99030 56064503 ~ 56064862 (-) True G1391586
TU1589295 other upstream 259941 56225414 ~ 56226061 (-) True G1391624
TU1589358 other upstream 315579 56281052 ~ 56293472 (-) True LOC110492371
TU1589476 other upstream 458799 56424272 ~ 56437279 (-) False G1391796
TU1589480 other upstream 458799 56424272 ~ 56437279 (-) False G1391796

Expression Profile