RNA id: XM_021566618.2



Basic Information


Item Value
RNA id XM_021566618.2
length 1199
RNA type mRNA
GC content 0.49
exon number 3
gene id LOC110492365
representative False

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 56076203 ~ 56078237 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGACAACCTGAGTGAACTACCTTCATTTTGTCCACCATATTTGGCTCTGCATTGTAAGTGAATATGGCAGTGCTCTTTGGCATGGGACATTATTGTCGCCTGGCAGGACGAGTTATGAGCGCACTGTCCCGCAGACAAACGCGTGGTACGCTTCTTCCAGCGACAAGATGGTATAGCACCCAAACGACTGGCGATAGTGGCTGCCCGTATGAGATGTGTCATGCCGATCATAAATACCCGACGTCCTGCCAGCTACGGTGACCCTGTGTTGATTAACAATGTTATTTCAAAGGTTTACAACATAGATTTCAATTATCGACAGGATGTCACTCTGTTTTGGCTTGTTATATTGTATAACGCTTTGGAGCTGCAGTTTAAGCTGGATGACAGGACAGCCCACAGCAGTCTGGACCTCTTTAAGAAGGACACAGGCGTCATCTACCGCATCTTGGGCCTAGACCCCAGCCATGTCCAACAAAACCCTGAGCGCTTCCGGGATTGGGCTGTGGTGTTCGGAGACGGGCAAATCACAGGTGGCCGCCACTACTGGGAGGTGACGGTGGAGAAGTCCTCAGAGTTCCGTTTGGGTGTGGCCTTGGTGGCAATGTCAAGGGATGACTGTGTGGGCACCAACAGCTCCTCCTGGGTGTTCGGCTACGTCCAGCGTAAGTGGTTTGCAATGACAACCAACCAGAGGGTGCCGGTGACTCTGGTGGGGAAGCCTGACCGCGTGGGCATCCTGTTGGACTACGAGGCCGGCCTGATAAGCCTGGTGGACATCCCAAAGGCCAAGGTGATCCACAGCATGAGGGCCATGTTCAGGGGGCCTCTCTGCCCAGCGTTTGGCTTGTGGGATGGAGAGCTGCTTACACACTCAGGTCTGGGGGAGCCCGAAGGCTTGAAGTGAAGCATCTCTACTGATGACAATATGGTAGGGAGGTAGGAATAGCTATGTACATTCTGACAACTTGGTTTTTGTAAACTGAACACTTACAGCAGGCAGCACTTGAAAATGTCTTTCAAATCTCCTATGAAAAGCAATATTCTCCATCAGGATTTGGAGAGCAGGGAGTTTGTCCAGTGTATCATTTTATTTCTGTACAGACTCAGGCAAACTCATCACAATAAGCTATTTTTTTGTTACCTCTtgtgtaatatttttttttaagtctgAAATAAATGGCAACAATATGAAGCTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1588752 lncRNA downstream 67450 56006674 ~ 56008753 (-) True G1391127
TU1588724 lncRNA downstream 74572 55943176 ~ 56001631 (-) False G1391102
TU1589267 lncRNA upstream 7894 56086105 ~ 56086321 (-) True G1391597
TU1589292 lncRNA upstream 145324 56223535 ~ 56223853 (-) True G1391621
TU1589294 lncRNA upstream 151784 56229995 ~ 56230322 (-) True G1391623
TU1589365 lncRNA upstream 162105 56240316 ~ 56240670 (-) True G1391693
TU1589357 lncRNA upstream 162563 56240774 ~ 56243986 (-) False LOC110492371
XM_036947343.1 mRNA downstream 39416 56009188 ~ 56036787 (-) True LOC110491116
XM_021566606.2 mRNA downstream 78129 55986204 ~ 55998074 (-) False LOC110492360
XM_021566607.2 mRNA downstream 78129 55986204 ~ 55998074 (-) False LOC110492360
XM_021566605.2 mRNA downstream 110730 55955040 ~ 55965473 (-) True LOC110492359
XM_036947336.1 mRNA downstream 168163 55896186 ~ 55908040 (-) True LOC110492355
XM_021566625.2 mRNA upstream 128601 56206812 ~ 56221284 (-) False LOC110492369
XM_021566623.2 mRNA upstream 128601 56206812 ~ 56221578 (-) True LOC110492369
XM_021566622.2 mRNA upstream 153054 56231265 ~ 56236905 (-) True LOC110492367
XM_036947348.1 mRNA upstream 162552 56240763 ~ 56282522 (-) False LOC110492371
XM_036947347.1 mRNA upstream 162552 56240763 ~ 56293503 (-) False LOC110492371
TU1589255 other downstream 11341 56064503 ~ 56064862 (-) True G1391586
TU1588497 other downstream 249572 55824159 ~ 55826631 (-) True LOC110492352
TU1587517 other downstream 1089940 54984818 ~ 54986263 (-) True G1390030
TU1587231 other downstream 1530960 54544728 ~ 54545243 (-) True G1389763
TU1585952 other downstream 2343288 53730337 ~ 53732915 (-) True LOC110492299
TU1589295 other upstream 147203 56225414 ~ 56226061 (-) True G1391624
TU1589358 other upstream 202841 56281052 ~ 56293472 (-) True LOC110492371
TU1589476 other upstream 346061 56424272 ~ 56437279 (-) False G1391796
TU1589480 other upstream 346061 56424272 ~ 56437279 (-) False G1391796
TU1589557 other upstream 460381 56538592 ~ 56540929 (-) True G1391869

Expression Profile