RNA id: XM_036947367.1



Basic Information


Item Value
RNA id XM_036947367.1
length 4907
RNA type mRNA
GC content 0.51
exon number 20
gene id LOC110492382
representative False

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 56729499 ~ 56762482 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTCAAGGCACAGATTCAATTCTGGCTGAGGACGAGGTACAGACGGAGTCggatgtggtagaggggatgGATGTGGCACTGCGATCCAAAGTGTCTGACCCCGGGTCAGCAGAGCGGGTGCTGGCAACTCAGAAGAGGAAGGTGTCCAGCCCAACCCACTCCTCCAACGGCCACTACCCCTCAGACACCCCTCCAAGCCccttgaagaagaagaagaaacctgGAGCCGTCCACAGCAACAACAAAGACCAGGACAGCAGGAATGACTTCTACTGCTGGCTGTGCCACCGCGAGGGCCAGGTGCTCTGCTGTGAGCTCTGCCCGAGGGTGTACCACGCCAAGTGCCTCAAACTGCCAGCAGAGCCCGAGGGTGACTGGTTCTGTCCAGAGTGTGAGGTACTCACTCACGTGTGTGCCgtgcgtgtggAAAATCACAGTAGCAGAGTGCATAGAGACACAGAGCAAGGCCATGACTATGCTAACGATAGACCAGCTGTCCTACCTGCTGAAGTTTGCCCTCCAGAAGATGAAACAGCCGGGGACTGAGCCCTTCTGGAAGCCTGTGGCTCTGGAGCAGCACCCTGACTATGCTGAGTACATATACCACCCAATGGACCTCGCAACACTAGAGAAGAATATGAAAAAGAAAATGTATGGCTGCACAGAATCCTTTTTGGCTGACATGAAATGGATCTTACACAACTGCATCATCTACAATGGAGGAAATCACAAACTAACAGCAACAGCAAAGGTTGTTGTGAAGATCTGTGAACATGAAGTGAATGAAATTGAGGTCTGTCCGGAGTGCTACCTGTCCTCGTGCCAAAAGAGGGACAACTGGTTTTGCGAGCCATGTGGTCACCCACACCCCCTGGTATGGGCAAAGTTGAAGGGCTTCCCCTTCTGGCCAGCCAAAGCACTACGGGAGAAGGATGGACAGGTGGACGCACGCTTCTTCGGACAGCATGACCGGGCGTGGGTTCCCATTAACAATTGCTACCTCATTTCCAAGGAGATTCCCTTCTCTGTGAAGAAGACCAAGAGCATCTTCAACAGCGCCATGCAGGAGATGGAGGTCTATGTGGAGAACATCCGCAAGAAGTTTGGGGTGTTCAACTACGCCCCCTTCCGCACCCCCTACACGCCCAACAACCAGCTTCAGATGTTGCTGGACCCAGCCAACCCCGACGCAGGGACTGTGAAGACGGAGAAACCTGACAAGATGCGCTTCAACTTCGACATGACTGCATCTCCCAAGATGCTCTTGGGCAAGAGCTCTCTGTCGAGCGGGATGGGACGGAGGATCTCTCTCACGGACATGCCTCGCTCTCCCATGAGCACCAACTCGTCTGTACACACAGGTTCTGACGTGGAGcaggatgggatggagagagggccTAGGAACCCCCCATTCCACTACAGCGCTGGGGAGGATTCTATGGACTATACCGCATCCCCTGCCTCAGTGAAGATGGGCCATGCAGGCAGCATGACGGGCAGCCCCAAGCCCTTCTCCCCTGGTCTGGTGCCCAAACAGGAGAGGGCCCCAGGCACAGGCAGCATCCTCAATCTCAACCTGGTGTTTGTCACAGATCGTGTGAAGGCTGAGATGGACCTGAAGGAGCTCAGTGAGACAGtacagcatcaacaacaacaacaacaggggtCATCACTCCTCCTCACCACCCCCAAGAGACCCATGAGGAGCCTGGACAAGACCATCGAGAGCTGCAAGGCCCAACTAGGCATTGATGAGATCTCTGAGGACGTATATAAGGGCGTGGAACACAGTGACTCTGAGGATTCTGAAAAGTCAGACTCCAGCAACAGCGAGTACCTTAGCGACGAGGATCACAGACCGAAGAGCGCCGCCCATGACAACAAGGACAAAGCAGAGAGGGAgtctagaaagaggcccaaggCAAGCACACCGGTAGAGGACAAGGGGGCAGTCACAGGGACCAGGGATAAAAAAAACTCTGAAGCCCTGCTCAAAGACAGACATGGCAGCAATGGTCCAGAGAGAGATTCCCGGGAGAAGCCCATGACTCCCCAGACTCAGCCCCCCACAGACAGGCCCAAGGCTCTAGAGGTGGGTAGGGCAGGCGCACCCCGGGCCCTTGCTGGCCCAGACCAGGACTCCGACTCAGAGAGGGAGCTGGTGATTGACCTGGGGGATGAGCAGGGGGGCAGAGACCGTAAGAGAGCCAGGAGGGAGCCAGGGGCTGTAGCCACTAAGCCCACGAAGGAGCCCCCTGGCACCAAGCTGGAAGGTAAATTCCCCACCGTAGTGACCCCCCCTCTAGCCTCCGCCACCTTGTCCAACCCCAAAGACCCCAGTCAGCCCCTCATCAACCCCACACTCAACCTGTCCTCTAGCCAGCCCAACACAGCCTTCACCACCCCCCCTGCAGCTCCCACCCTAGccaccaccctctcctccacAGCTGCCTCAGCCCAGTTGGCAGCGAAGAAACAGCGCCCCCTGCTGCCCAAAGAGACAGCTCAGGCAGTGCAGAGGGCAGTGGTGTGGAACCCCGCCAACAAGTTCCAGACGTCCTCCCAGAAGTGGCCCATGCAGCAGGAGGAGCAGCCGGCTGGGCCAAACCAGACACAGGTTCCTGTCCAGGCTCCGACGCAGGCACAGACACGCAGCCCACAGCAGGTCCAGTCACAGCAGCAGTTGCAGGCATCCTCCAGTACACGTTACCAGACCAGACAGGCAGCAAAAGCTGTGCAGCCTAGAGAtggtccccagacctcaacctcATCAGTTACCTTGGTCACCTCTggtgcctcctccacctcttcctcctcttacCTGGCAGGAGACTTTCAGATCCCCACAGCTTCAGCAGATGTGGCAGCTGACATCGCAAAGTACACCAGCAAAATGATGGACACGATTAAAGGGACGATGACAGAAATCTACAACGACCTTTCCAAAAGCACTTCAGGAAACACAATCGCAGAGATCCGACGGCTgaggatagagatagagaagCTTCAGTGGCTACATCAGCAAGAGCTGTCGGAGATGAAACACAATCTTGAGCTGACTATGGCAGAGATGAGGCAGAGTCTGGAGCAGGAGAGGGAGCGTCTGGTGGCGGAGGTGAAGAAGCAGATGGAGGTGGAGAAACTGCAGGCAGTGGATGAGACCAAGAAGAAGCAGTGGTGTGCGAACTGCAGGAAGGAGGCCATCTTCTATTGCTGCTGGAACACCAGCTACTGTGACTACCCCTGCCAGCAAGCCCACTGGCCAGAACACATGAAGTCCTGCACACAGTCAGCAACAGCTTCTCAACAGGAACCAGAGGTGGAGTCAACCTCTGACCCCTCAGCCAAACCACCAGGTCCCTCTTCCAGCGACCAGCCCCCCTCTGGTACAGCATCTGCCCCCACAGACAAAGGCTCCTCTCCTACCTGCAGCGTGGACAAGTGCAAGGACAGGGCCTCTGTTACTGTGCCCTAACCACTACACTGCACTGCACATTTTTACTCTACAATCCTACATTCTGTTAAATGTATGTATCTGTCGGAAAGGGACTAGAGGATATGTACAATAGACCAAATCTCTCTGCGACCAACTAATCTGGGAATGTCGAGCGAATCTCAGTATGACCACAGAGGCAATTAAACCACCAAACACCCTCAACCTCTCCTAGTCAGGCTCAGGGCTTTTAAATGCCATGGACACTCTTTGCATGAAGGCCTGCTCCTCTGTGATTCAGCTGACTTGTCCCGTCTCGATTTGTTCAATGTCTGCTTCGTGATCTGATATTTCAAGCCATCTTTCATCCTCCTCAAAGTCTGTGCCCTAGACTGAAGGAGTTACTTACCTTGTCCTTGTGACTGTATTTCATCTGGATGTAATACATTTTcattacctctctcctcctttcatccCCATTTGATGTCCCTCATAACCACCTACCTTAACGATATAGGTATCTACAGGAGAGCCCATCAAAAGATCAGACATCAAAGTTTTCTGTATTCTGACAGCActcttaaaggaaaactccacccaaaaactctcttggtatttgtttcatttgcCCATGGTttatatagtcccaaaatgtattgcatgtcagcaatcaagtttaagATATGTAAATGTTAAAATGCAGAAATACAGCCAGTATGATGCTGCGTATTGCATCAtttgggtggaattttcctttagACAATCTTAAACTGTGATGCTGCTCTTTAAAATATACCCCAAGTTTTTATAGTTATTTGCCAACGGAAGTGTAATGGCACATTATTGTGCCAGCCATTTTTGGGACACCCAACAGATTTAAAATATAAATTCTACATTGTCAATACAGTTTAAAATATTTCATAATTTAGTAAATTGTCATTAAGTTATCAATCTCTCCCCCTGTGTGTGCATTATTGGTTCATACTCATATTATATAGTAACTCAGTGTTTACATAGAATTTAACCAACTgtgatgtataaaaaaaacataatggCTAAAACTGTACAATGTTTTTGTAAGAAGACACATGGACAATATTTATAGTGCTACAACAAGCATATGAGGTTCTCTTTTTTATAGCACTGTTTGGGAATGTTCCAAATGTCTTGAAACAGCTCGACTCTGGAAAACAGTTGTATTTGAAAATGCATTATAAGACTTCCTATGAATGTCACTAGGACCCTCTGTTCGGACTCTGTCAGATCTATTTCTCGCATCTACCTTCGTTGTTGTGGTTACTTCGGACTATGATAAAGCGTGTTGGAGGGTAAAGGAAACTACAAAAGTTATTATTATACTGAGCATGTTTATTTGTCCCCTTTTTTGTCTCACGTGCTCTTGTTTACATATTGTACATACAGTAAATGGATTGTTAATGTCTTAAAGAAAACAATTAAAACAGGTCTGACCAACC

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU1589208 lncRNA upstream 28179 56708377 ~ 56708669 (+) True G1391540
TU1589204 lncRNA upstream 34946 56701567 ~ 56701902 (+) True G1391536
TU1589200 lncRNA upstream 39117 56697504 ~ 56697731 (+) True G1391532
TU1589198 lncRNA upstream 42654 56693974 ~ 56694194 (+) True G1391530
TU1589183 lncRNA upstream 61015 56675527 ~ 56675833 (+) True G1391515
TU1589230 lncRNA downstream 11473 56773955 ~ 56774163 (+) True G1391562
TU1589232 lncRNA downstream 13045 56775527 ~ 56776051 (+) True G1391564
TU1589237 lncRNA downstream 58755 56821237 ~ 56821546 (+) True G1391569
TU1589163 lncRNA downstream 66079 56828561 ~ 56829502 (+) True LOC110492385
TU1589246 lncRNA downstream 90276 56852758 ~ 56854464 (+) True G1391577
XM_021566638.2 mRNA upstream 196716 56536667 ~ 56540132 (+) True LOC110492377
XM_036945857.1 mRNA upstream 210787 56524919 ~ 56526061 (+) True LOC118939476
XM_021566635.2 mRNA upstream 228853 56474414 ~ 56507995 (+) True LOC110492375
XM_021566636.2 mRNA upstream 231593 56474410 ~ 56505255 (+) False LOC110492375
XR_005036559.1 mRNA downstream 5164 56767646 ~ 56775078 (+) True LOC118939558
XM_036945791.1 mRNA downstream 17506 56779988 ~ 56790929 (+) False LOC118939462
XM_036947368.1 mRNA downstream 28301 56790783 ~ 56820445 (+) False si:ch73-181d5.4
XM_036947369.1 mRNA downstream 28301 56790783 ~ 56820445 (+) False si:ch73-181d5.4
XM_036947370.1 mRNA downstream 28301 56790783 ~ 56820445 (+) True si:ch73-181d5.4
TU1588882 other upstream 489975 56246515 ~ 56246873 (+) False G1391254
TU1588184 other upstream 913656 55811988 ~ 55823192 (+) True G1390616
TU1588176 other upstream 913831 55794082 ~ 55823017 (+) False G1390616
TU1588185 other upstream 927202 55793024 ~ 55809646 (+) False G1390616
TU1589153 other downstream 17579 56780061 ~ 56790681 (+) True LOC118939462
TU1590308 other downstream 603469 57365951 ~ 57366517 (+) True G1392601
TU1590330 other downstream 634458 57396940 ~ 57397177 (+) True G1392616
TU1590331 other downstream 639003 57401485 ~ 57402530 (+) True G1392617
TU1591401 other downstream 1656904 58419386 ~ 58423502 (+) True G1393570

Expression Profile


XM_036947367.1 Expression in all Baseline Samples

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XM_036947367.1 Expression in each Bioproject

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XM_036947367.1 Expression in each Sample
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