RNA id: XM_021566689.2


Basic Information

Item Value
RNA id XM_021566689.2
length 3318
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC110492401
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 57965807 ~ 58000251 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTCTGCACTACCCTACcagatttgagagagagagagccgcaagaaagagagagagataaagaaaaatataaagagagataaagagagagtgtgagaaagagagaaatatataaagagagagagagagagagctgctgaAAGAAAGAGTAgcaaaagaggacagagagagggaactacAAAGCCAAATCAGGTGAGAGAGTAAAAaagacaggacagacaagagGAGAACAGAAGCAGTGTTTTCCAGTGAGGCCTATCtcaatgttcttgttttttgaGCATTCTTAACAGATCTAGAGACTAGATGACCAGGCTTTACACACCGCAGTGTCCTGCCCTGGAACTCTGACaggagtggacacacacacacactcatacacgcaCTCCCTCTCTCGCACACATACCTGCATACACAGAGGGTAGACGTTCTCCATCACTGTCtgcaaccccccctccccctcgaTTGGACCATGTCCACGTCCTCGTCTGGATCGACCAACCACAACAAGCGTCAGTCATTGGAGACAGACAACTCTCAGATTGTGTTGGACAATGACTCAGCCCAGCATCTGAAGCTGAGGGAGAGACAGCGCTTCTTTGAGGAGGTGTATCAGCACGATATGGACATCCTCCTGTCCTCGGCTCACCTGCACATTGACAGCAGGAAACCTCCCATGGGCAGTATCTCCTCTATGGAGGTGAACGTGGACATGCTGGAGCAGATGGACCTCATGGACATCTCTGACCAGGAAGCTCTGGATGTGTTCCTCAACTCTGGGGCCAACAACAGCCCACTGGCCTCCCCTTTACCAGAGGTAGACgatgaagaggaagatgaggaagacgAGAGTAAAGAAGTTGTCTACAGGGAGCGTGTGCCAACTTGCGACATTCGCCGGGGGTCAAAATCTCGCATGTCATCCACCTCTTCCGGTTCCAGTGACACCAGTGGGGGCGGAACCGACACCCATGTGGTCCAATCAGATGATGAGGAGGTGCACGCAGACACCCTGTTGCTGATCTCCGTGCCTCGAACAAAAGATGAAGAGGCAGAGGAAGAAGATGAAGAGAAGTGAGGCCTGTCCGCTCCGTTGTCATAGAGACACAAGCCACTTGCTGTTCTGACTGTTGTCAATGACAACAAGGAGATGGTAAACAGACTAACTCAGAGAtccatacatatacagtaccatcaCTTCCTCTTTACATGTTACTGACGCCCCTGGAATTCCTTGTGGGAAACCCCTAGCATGGACAACCCTTATTATTCTTTGGTGTGTTGTTATGggtcaacccactgggcacagacaccATTTAAACGTcaaatgtttatttacatttggttgaaatgtcaactaatgtgaattcaacatgaaataaacaaaaactaTCACCATGTCATGTGATTTAGGTTAACAGTTGGGTGAAAGAAAGACTAAATTCCCTCACGTTGAAGACTTTTTGCAAATcgaatcagttttccacatttgATTCATTGTCATCAGATTGCATTTTTTggttgaaattacgtggaaacaacattgatgcaaccagtttttgcccagtgggaattGATTCTCTGCGTAACTATGAAACTACTTATTGATGACTCCTCATTGTTTCTACTTAGCACTATTATAAGGAACACTCAGTTTTCACTGTTTTTTCTTCTGTTGCTTCAGAGCAATATACGTGTATTGTGTTCAACCATTATCAAGGTGCCAATATTGTGTTCTCCATATTTATCACACACAGAACATCATTGTTTGAGGGAGGAATGTCCAGATAGATGTCTGTCTCACATAAGAACCTGTGAACAACTACTTTAGTGAGACTAAATTCTAGATCCAATCCTATCCATTCATTAATGCTGCTATATAAACACTGAATTCTAACATGACTCTTTGCTGCATGATTTGGAACAGTTAGTAGGGGAAGTCTCAAGCGTTTTGGTTTCATTTGTTCTCAGTCAAGGTATTTACCTCCCTTTATGTGACCGTTGACAGAGGATCCAACATGTAGTAACataacacagtcaacacacacacacacacgcactagtCTACATTAGCATACTGGATTCTCTTCTTTGGTTTCTGCTATTGCTATTCCCTCCAGCTCAGGACACCTTGACCACGGCCATTTCAAATATTTAAGTCAGTTATCTACAGTAGCTACATACATTTGTTTTACTTATAAGTTAATgacatgtacccattgattcttgaagaacttATAAACGCCTCATGAGCTTAgctcaactgtcgtaccccatcagagcCCAAAATGTAAGCTTGTTTTactttgtaaacaaagtaaatgtaaacaatttctccagccccataccTCAGCTTGCCCCTTTAAGAGGGTCAGAAAGATTTAAGAGTGGTATTTAGAAGTACAATCATCCCTGTGTGGCATTCCCCTATGTCAGAATGAGTTAAGGCAATGTCTCACCAGAACATCACCTTGGTATTGGTAAAGGCCTTGGTCTCATTCAGACAATACCAGCCAGTTACAGGAAATTCACGACACTAGCTACTAGACTAGGGAGGCGTAACCTTACCCAGACTTTTGTTTCTGCTTGGTTGGAGCAAAATCCTGCACCCACACCTGCCATCACAAGGTAAGATTTCCCACTGTTTTAATTCAGTACATACTGATGTTTTAACTGTAAAAGAAAAGTAGAGAGCAGGAGTGAGCCACACAGTCCCCAGCCTCATGTTGTCTGGTTATACTCATCTCATCTGAGTACCATGAAATGCATGCCACattgtaaatgtactgtatgttctgtACAGTTCTGATCATCTGCTATGAGGTGTATCATTTCCAGTGTTTTTCCTGGCACTTGAGATAAAATTGTATGCATGAAGCAAGTCTTGTGAGGACAAACAGGGCGTCTTTCCTCCCTGTAGCCTCCTATTGAGCTGAATGTTGAGGGTTGGATATGTAGACACTGTAGAAACTTGGCACACAAAGCGGTTTATGCCAGTTTTTTGGGTGTTAGAGTATATCAACAAGCTGGAAtggtttgtgtgtatgtgggtgggggggggtgggtgtgtgcctgggtgtgtgtgtgggtgtgcgcatgcatgcgtgtgttcATTGCAAGAGAACAGTAGAGAGCAGCCTCATGTTGTCTGGTTGTACTCCTCTCACCATGAAAGTGACTGTGTTTGTGAGTGTACATGTGCTTTCTGGTTTTATAATGGTCCTTCTTTGACAGTGGAAAACATGGTTGTGTGTATAAGTTCCCTCTCTCTATGAGCTCCCAATCAAGATAAGGAATAAAATGAATACAATTGCCAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1591660 lncRNA downstream 1616 57953903 ~ 57964191 (-) True G1393804
TU1591630 lncRNA downstream 68327 57897266 ~ 57897480 (-) True G1393777
TU1590993 lncRNA downstream 153266 57812119 ~ 57812541 (-) True G1393241
TU1590987 lncRNA downstream 162677 57798893 ~ 57803130 (-) True G1393236
TU1590983 lncRNA downstream 168655 57796829 ~ 57797152 (-) True G1393232
TU1591767 lncRNA upstream 123675 58123926 ~ 58124202 (-) True G1393900
TU1591772 lncRNA upstream 131356 58131607 ~ 58131820 (-) True G1393905
TU1591775 lncRNA upstream 134859 58135110 ~ 58135321 (-) True G1393908
TU1591777 lncRNA upstream 136174 58136425 ~ 58136643 (-) True G1393910
TU1591781 lncRNA upstream 140473 58140724 ~ 58141083 (-) True G1393914
XM_021566683.2 mRNA downstream 44119 57898471 ~ 57921688 (-) True LOC110492399
XM_036947375.1 mRNA downstream 72488 57887709 ~ 57893319 (-) False LOC110492397
XR_005036561.1 mRNA downstream 72488 57887709 ~ 57893319 (-) False LOC110492397
LOC110492394 mRNA downstream 111900 57850404 ~ 57853907 (-) False LOC110492394
XM_021566661.2 mRNA downstream 120607 57833449 ~ 57845200 (-) True LOC110492390
XM_036947378.1 mRNA upstream 69937 58070188 ~ 58070751 (-) True LOC118939561
LOC118939560 mRNA upstream 73656 58073907 ~ 58078433 (-) True LOC118939560
XM_021566691.2 mRNA upstream 93291 58093542 ~ 58097736 (-) True LOC110492403
XM_036947379.1 mRNA upstream 104849 58105100 ~ 58162080 (-) False LOC110491122
NM_001124456.1 mRNA upstream 228810 58229061 ~ 58235899 (-) True LOC100136178
TU1591622 other downstream 72525 57887491 ~ 57893282 (-) True LOC110492397
TU1591593 other downstream 112021 57849674 ~ 57853786 (-) True LOC110492394
TU1589557 other downstream 1424878 56538592 ~ 56540929 (-) True G1391869
TU1589476 other downstream 1528528 56424272 ~ 56437279 (-) False G1391796
TU1591827 other upstream 204508 58204759 ~ 58207165 (-) False G1393949
TU1591828 other upstream 204508 58204759 ~ 58207165 (-) True G1393949
TU1591894 other upstream 273777 58274028 ~ 58278427 (-) True G1393997
TU1591868 other upstream 302260 58302511 ~ 58306641 (-) True LOC110492410
TU1591975 other upstream 424207 58424458 ~ 58428113 (-) True G1394067

Expression Profile