RNA id: XM_021566702.2


Basic Information

Item Value
RNA id XM_021566702.2
length 3682
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC110492410
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 58302511 ~ 58315644 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGTGAAGCGTTACGGAAGATTGTACATCTCTCTTGCTTGTCAAAGTCCTCCCTTTGTGTGGCCCCTTGGTTCAGTCGGGCCTGACGCACAGAACCTTGCAGTAAATTGAACGGGGTCGTGGGAGAGAAGATAGTCAGTCACCAGgggtagttggctagctaactagcttggtTAGCAGCTTCACTGTGTAGCTAGGCTGAGTCTGAGATGTGGCGCAACGTCCCTTTTGTCTGAAAACTGTTTGCGGAAAAATATATAATACCGATGGAGCCAGCCAACTGATTTTCAGAACATCTATCTACAGTTCGTTTTGACTATCGGTCATCTGATCTGGACCTCGAACACATTGTAAGACGGACACTTactggctagctggctagctggctgCTAACTTTGATGTTAGCAAGTAGCCAGTACGAGTAAATGGTTTTCACGAGAATGGACCTGTTGAACTATCAgttcctggacaaaatgaacaacaATATCGGGAGACTACACTACGAAGCTGGATCTTCTCTCACAGGTGAGTCCAGGATGCCGTCGCTGCCCTCTCCAATGACCAACATGAGGACCGGTCCTCCCCCCATCTGCCCCAGCAAAAGGAAGTATGGCGAGGAGCAAGTAGACGACTGCGTTGACTGTGACaacaaccacatgaccaaaatGAGTCGACTGTTTGCTGCTCAACTGGGACAGCCTGCCGGCGGAGACAACCGCAACGACCCTTGGATCCTCGGCCACAGCCCCGTGGAGTGCATCACTTCCTCCTCCAACGGCCTCCATGGCAACCACTTGTATGACTCCATCCCCTCCTATGCGATGGACCAGCCTCTGGCTCTGACTAAAAACAGCATAGACTCTGGATTGGGTGGCACAGAGAGGCCTACCATGCCCGGCCCTGTGGACAGACCACAGAATCGTCCCTCTGTGATCACCTGTGCTCCTGCAAGCAATCGCAATTGCAACCTGTCTCACTGCCACAAGTCTCACAGCCCCAGCCCACCCATGGATCAGAGGAGGGCTGATGATAACACTGCGGTCGACCCTGTGATCGAGGAGCACTTCCGCCGCAGCCTGGGGAAGAACTACAAGGAGCCCGAGCCCGTCTCCAACTCTGTGTCCATCACAGGCTCGGTGGACGACCACTTTGCCAAGGCCCTGGGGAAGACCTGGCTCCAGATCAAGTCCAAGGGGCCGGGGGGACACCCCCACAGTCCAGAGGCCAACTCCTGAAACACTGGCCGGACCTCCCTCACTGTTGAATGGTGAACCACAGCCATTTCTTTGTCTGTGGCATCAGACAAGTGCACCGATTGACCTCCCTATACCATTCATTGTCAAGCTTGACTTCCCTGAGCTCAGAACAACGCTAGACAAGACAATGAATTTCCAGTTTTAATACTGTATTATACACCAAAGCTGGCCTTTTACAGACCTTGGGGGGTTCTCCCTGCTCTTATTGTTTGACTGACACTCCGATCTGGGAGGATTTGATACATTTGTTCAGATAGGGTAGTTTTGGTTTGAGTCCAAGTGTTCAAATTCTTCATTTTGAAAGCAGAAATATCAATTTGAGGAGCTCTCTAGGACCCGTATTGTCAGCTTGTTTTTATTTGAGGTGTATCATTTGATATATTTTTAACACTTACCCTGACAGAGATTCCCAAAATGACCAATTCATTTGGCCTTTGAGAAGGCATACCGTTCGGTCTTAACTCCCTCATGCCTTTCTTATTAACCAAAGAACTTGCCTGCTGCTTCAAACAAAAAGCCATTATCTGCTTTGCTTCTCTTCTGTTTTCATCCTCCTGCCATCTCCGTTAACTCTCCACGTGACCCTGTGTTTTTAGTTGGAAAGGAAGGCCAGCTCTGATTTGCACTATTATGTGTTAGATTGAGGTGGTGGTAACAGCATACCTGTTTCATTTGGAGCATACAGTACATTTGTAAGAGtgcgtttttttgtttgttttaacaATACTAACAGTTGTAATGCTATCAAGGCTCTCGTCTCCCTCTGGTCacaatgttttctctctcttttcttctccaaCTATTCAGAACTGGACTAACTTTCTCTTTTGTGAactttacattttttgtttttatcTTTTTGTTCTTCTAGTACTCACTAGTTTATTTCGTAGATACAGTTAGTAATAATTATAGTATTCTGCTTACCGAGATGCATGTTTCAAATAGCTGGTATCTATTATAATAAGCCttgttattctattctatttaCCCTCAGAATTTATTTTTGTCAGTAACCATTTTAGAAATACTTACTGCTGGTACAGTCGTactcaatatatttttttgtatatgaTTTTCATTAGAATATGTATACACTAGCATCATCTACAAATCGCAGCCTCTGGCAAGGCTGTCTGAATGCAGTATAATAGTCTACGTTGTTATTATGTGGTTGGTACGGGATGCTTTGGCATAGACGCATGACTGAATAGTCAACATTTAACATGTAGACCAGTCCTGTCTTAGAGTTGACTATTTTCACCATAATGCCGTTTAGTTGTGGTTTTATTTATTCCAATCTGATGTTTAGTTGAATACTGTTGAATACATTTTGACTAACTTTTCTTTTGTTAAATTGACTCTCAATGAGCATGTCTACTTGACATTCTTCACTTTGGAAATGTAATGTTTATTTCCCCTAAATGAAAATGCTGATGACTTCACCCACATGTGTCATGGCTGGCCTTGAACGAAAGCCTTGGCATGAACATTCCACCATCACTACCCAGCttaatatttttgttgtttaAAATAAGATCTGGTAAGAGTAAGCTTTGAGGAAAGAGGGATAGGTTCTCCTACATTTGTGGTGTTTCTATAGTGTAAACTGTATGGGActttaaaaaacatttaacatAATCAAGGGGAGTAGCAGAACATCTAAAGTTCTTTATAGAAGCAGTTTGAGGATGAATGACCTTTCTGTAGTGTTTTCCATTTCCTTTAGTAAACATATGAGTTAACACTGATAGAAAATTGTATAGTGCATTGAGATTGTTTTAGTCAGCTCTTTGTGAaaaaattatattatatttactTGCATCCTATATTCTACACTGTTTTGAAAATGACTATATAAACTCATATTCccgttttattttttactttgatATCGAAAGACTATCATTGCGCCGTGCGTAATGATCCTAGAGAAAATTTAACAGAACAATGTACTCATGATATGTAGCCATTGGATATTCATGATCCTCTAACCATACATTTGTATCTATCAAAAAAGTTGATCTTTTTCCAGAGTTCTGAGGTTTGATAAGTGCAGGAACACCAGTCGTTCTAAGAATAAGGCTCTCTTGGCATGATGTCAGGGTGACATTACTGCTGCAGGTTCTCTGCTTGTTTCTGTACCACAGTGGAACTGTAAGGGTTTATCACAAGTTGAATCTCagtgatatgttggggtttaatgTTCCAACGTTATTTAATTGGTATTTGACTGCTTGTGCCTCTAAACAACAAGTTGCAGGAACTAACTCCTCCACTTGTCTCTTAACATGGGAAACTGCATTGCCTTAGACCGTTTGTTAATCTGTATTTTGTTCATTTTTGGTCTTATTTCTCCAGAAGAATATaccactgttttttttttaacttgatTTGTCCTAAATAAACTTTAAATGCTCTATCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1591902 lncRNA downstream 7563 58294686 ~ 58294948 (-) True G1394005
TU1591889 lncRNA downstream 34376 58267779 ~ 58268135 (-) True G1393995
TU1591877 lncRNA downstream 47450 58254842 ~ 58255061 (-) True G1393983
TU1591873 lncRNA downstream 52066 58250142 ~ 58250445 (-) True G1393979
TU1591845 lncRNA downstream 89774 58212525 ~ 58212737 (-) True G1393955
TU1591915 lncRNA upstream 14061 58329705 ~ 58355527 (-) True G1394018
TU1591978 lncRNA upstream 125413 58441057 ~ 58441816 (-) True G1394070
TU1592047 lncRNA upstream 256792 58572436 ~ 58572717 (-) True G1394128
TU1592048 lncRNA upstream 259058 58574702 ~ 58574912 (-) True G1394129
TU1592053 lncRNA upstream 268564 58584208 ~ 58584480 (-) True G1394134
NM_001124456.1 mRNA downstream 66612 58229061 ~ 58235899 (-) True LOC100136178
XM_036947379.1 mRNA downstream 140431 58105100 ~ 58162080 (-) False LOC110491122
XM_021566691.2 mRNA downstream 204775 58093542 ~ 58097736 (-) True LOC110492403
LOC118939560 mRNA downstream 224078 58073907 ~ 58078433 (-) True LOC118939560
XM_036947378.1 mRNA downstream 231760 58070188 ~ 58070751 (-) True LOC118939561
XM_036947386.1 mRNA upstream 51075 58366719 ~ 58393232 (-) False LOC110492413
XM_021566708.2 mRNA upstream 51075 58366719 ~ 58393301 (-) False LOC110492413
XM_021566711.2 mRNA upstream 51075 58366719 ~ 58393301 (-) False LOC110492413
XM_021566712.2 mRNA upstream 51075 58366719 ~ 58393310 (-) False LOC110492413
XM_036947387.1 mRNA upstream 51075 58366719 ~ 58394445 (-) False LOC110492413
TU1591894 other downstream 24084 58274028 ~ 58278427 (-) True G1393997
TU1591827 other downstream 95346 58204759 ~ 58207165 (-) False G1393949
TU1591828 other downstream 95346 58204759 ~ 58207165 (-) True G1393949
TU1591622 other downstream 409229 57887491 ~ 57893282 (-) True LOC110492397
TU1591593 other downstream 448725 57849674 ~ 57853786 (-) True LOC110492394
TU1591975 other upstream 108814 58424458 ~ 58428113 (-) True G1394067
TU1592280 other upstream 431226 58746870 ~ 58747299 (-) True G1394341
TU1592300 other upstream 523112 58838756 ~ 58847016 (-) True LOC110491124
TU1592757 other upstream 795728 59111372 ~ 59112897 (-) True G1394768
TU1593009 other upstream 1038556 59354200 ~ 59356849 (-) True G1394978

Expression Profile