RNA id: XM_021564479.2


Basic Information

Item Value
RNA id XM_021564479.2
length 3450
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC110491124
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 58836641 ~ 58847057 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGCGGGTAGCAAAGGAACTGTGAGAAGGAGATAATCACACTACAATACTTTCTCATCCTTAGTTTTACCTGTGATACCCTCGCAATGACAAGCCGGCGCAGCAAAGGGGACACTTAAGGGGAATTTACGGAAATCATTACAGCTAGGAAACTATATAAAATAATTGAGAGTAACTATTGGGGATATTCGTTGGTATCGACTTGGAGTAACTTTGGATACTTGGACAGTGACTATCGGAGAATATCTATCTATTTATCATTTTCGCTTACACATTGCATGAAACTGAGAGTGGAAGCACCATGAGTCGGAAAACTAGACGCTGGATTTTTCGGGTTTTGCTTTGCCTTGGGATTGTCTATTTGAAAATCGGTGGTTTTTCATCCGTGGTCGCGCTAGGTGCGAGTATAATCTGTAACAAGATTCCCGGGTTGGCTCCCCGACAGCGGATAATCTGCCAGAGTCGCCCGGATGCCATTATTGTCATCGGAGAGGGAGCCCAAATGGGGATCAACGAGTGTCAGTTTCAATTCAAAAATGGGCGCTGGAACTGCTCTGCGCTTGGAGAGAGAACGGTCTTCGGAAAAGAGTTGAAAGTGGGCAGTAAAGAGGCTGCGTTCACCTATGCCATCATTGCGGCCGGAGTTGCCCACGCCATCACTGCAGCCTGTACGCAGGGAAACCTGAGTGACTGCAGCTGTGATACGGAGAAGCAGGGTTTCTACAGTAAAGGCCAGGGCTGGAAGTGGGGCGGCTGTTCAGCAGACATCAGCTACGGCCTGGGCTTCTCAAAGGTGTTCGTTGATGCCAGGGAGGTCAAACAGAACGCCAGGTCTCTCATGAACCTGCATAACAACGAGGTGGGACGCAAGATCCTGGAGAAGAACATGCATCTGGAATGCAAGTGTCACGGTGTTTCTGGCTCCTGCACCACTAAAACCTGCTGGACTAAACTTCCCAAGTTTCGCGAGCTCGGCTACATTCTCAAAGAGAAGTATGCCCATGCTGTGCACGTGGAACCGGTCAAAGCCAGCCGCAACAAGCGGCCCAAATTCCTCAAGATCAAGAAGCCCTACTCCTACCGGAAGCCCATGGACACAGACCTGGTGTTCATTGAGAAGTCCCCTAACTACTGCGAGGCGGACCCGGTGACGGGCAGTATGGGGACACAGGGCCGGATGTGTAATAAGACTGTTACGCAGCAGATCAGCGGCTGTGACCTGATGTGCTGTGGACGGGGGTACAACACACACCAGTACTCCCGCGTGTGGCAGTGCAACTGCAAGTTCCTGTGGTGCTGCTACGTCAAATGCAACACCTGCAGCGAGAGGACAGAGGTGTACACCTGCAAATGACAGTATTTATTGGACCgtcggatgtgtgtgtgtgtgtggggggggggggggggggggggggggggggggtggatgtgtgtgtgtgtgtgcataatggAAACTTTTTTTAGGTAATGGATCATTGCTGTTTTTGCAGCAGTAGACATTGAGGAACTATAAGCAGAAGATGGAACAACAGCGATTTTGTCTGCACACAAtgctccttctcccctctcattGGACATATACTGGGATGCCTGCAACAGATCACCATAAAGGGAAACACActgtgtcctggatggcaggatggGACAGCCTCAGAACATGAACTATAACATACTGCGCtatctgccagccagccagcctagGTTTTTGGACTATGTGTCAATGCTGAGACTGTTAAAAAGCTATGGATGGATGTGTACTATTTGTTGACTGTAGAGTGAATGGATTCCCCCAACGCTCACCATAAATCAATGCTGGATATAATGCTGGACTCTGCTACTACTGTAGTTCTCTGTACCTGTACCCTCTTAGAAAAGGGGTTCTGAAAGGgctcttcagctgtccccatagtataacccttccaggtagaacccttttgggttccatatagaaccctctgtggaaaggattTTACATGGAACCCATAAGGGTTGGTACCAATAAtgattcttcaaagggttctcctatggggacagccaaagaacccttttaggttgtagatagcaccttttttctaagattgtAGCTCAATAAGACACGATATGCACAAATGAAATTAAACAGCCATCGGGAATATTTAACACACTGTATTTAGAGACAAATAAATAATATTAATTTATTTCAAAAAGAAACTACTGATTTTACCCATTATGGAGCAAGTCTTAATTGTGTAGATGGTGGGTTCTTCCCCAATGAGagtttttgttattgttttgtttgttaatGCAATCCAAAATAGAATTTAGAGTCATACACTGGAATTAGGACCACCTGGAATATTCTGTTGCTCCGATTGTTCCAGGTTAGGCTGGTAATAGGCTACTGACATTGACTTTCTCATGAGTTTGTGCTTAATCTGAAAtcctaccctattccctttgtagtggctctggccaaaagtagtgcactatatggggaatagggtgccattttggacatggACTTAGTCTTCCTTCTGTTTGCTGCTAGTCTGGAGAATCCCTCACTGTGGTCTAAGGGCATCAACACTACTGTCTGTGTTGAGTGACAACGCTCACCTCAAGCTGACTAAATTTAACAAGACATATTCAACCAGACACTCTTTTTGGTAAATATTGGTAAAGAGAGTATATTTTGAAAAAGCCTATTTTTATATACATGTCTTATTTATACTATTTCTTCTGGCATATTTCAATATCACACTCTTCCCTCTTTATCCCTCTGGAAAACCCATTCAATATCACACTCTTCCCTCTTTATCCCTCTGGAAAACCCATTCAATATCACACTCTTCCCTCTTTATCCCTCTGGAAAACCCATTCAATATCACACTCTTCCCTCTTTATCCCTCTGGAAAACCCATTCAATATCACACTCTTCCCTCTTTATCCCTCTGGAAAACCCATTCAATATCACACTCTTCCCTCTTTATCCCTCTGGAAAACCCATTCAACATCACACTCTTCCCTCTTTATCCCTCTGGAAAACCCATTCAATATCACACTCTTCCCTCTTTATCCCTCTGGAAAACCCATTCAACATCACACTCTTCCCTCTTTATCCCTCTGGAAAACCCATTCAACATCACACTCTTCCCTCTTTATCCCTCTGGAAAACCCATTCAATATCACACTCTTCCCTCTTTATCCCTCTGGAAAACCCATTCAATATCACACTCTTCCCTCTTTATCCCTCTGGAAAACCCATGTGGGAAAATGTGCCACTGCTGTCACTTCATtgttgtactgtatactgtattgttgtactgtatactgtattgttgtactgtatactgtatgttatttGGAGCCATGTGTTTGTCCCTGTGAATATATGGCTGTGTTCAAACTGCTTTGTTTACTGCATTTCATGACTGCTATGGTTGGAATACAGGAACAGGATAAGACTAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1592349 lncRNA downstream 9481 58826797 ~ 58827160 (-) True G1394399
TU1592340 lncRNA downstream 23640 58812747 ~ 58813001 (-) True G1394390
TU1592334 lncRNA downstream 30117 58806312 ~ 58806524 (-) True G1394384
TU1592326 lncRNA downstream 46231 58788659 ~ 58790410 (-) True G1394376
TU1592181 lncRNA downstream 104710 58731701 ~ 58731931 (-) True G1394250
TU1592401 lncRNA upstream 30995 58878052 ~ 58878279 (-) True G1394447
TU1592404 lncRNA upstream 32330 58879387 ~ 58879857 (-) True G1394450
TU1592619 lncRNA upstream 39807 58886864 ~ 58896956 (-) False LOC110492420
TU1592620 lncRNA upstream 39807 58886864 ~ 58896956 (-) True LOC110492420
TU1592635 lncRNA upstream 57268 58904325 ~ 58904573 (-) True G1394656
LOC110491123 mRNA downstream 106302 58675738 ~ 58730339 (-) True LOC110491123
XM_021566717.2 mRNA downstream 168810 58422904 ~ 58667831 (-) False LOC110492417
XM_021566725.2 mRNA downstream 168811 58423353 ~ 58667830 (-) True LOC110492417
XM_021566720.2 mRNA downstream 290427 58422999 ~ 58546214 (-) False LOC110492417
XM_021566722.2 mRNA downstream 317959 58422999 ~ 58518682 (-) False LOC110492417
XM_021566729.2 mRNA upstream 18492 58865549 ~ 58870791 (-) True LOC110492419
XM_036947394.1 mRNA upstream 24692 58871749 ~ 58877502 (-) True LOC118939563
XM_021566730.2 mRNA upstream 39619 58886676 ~ 58896959 (-) False LOC110492420
XR_002468998.2 mRNA upstream 39619 58886676 ~ 58896965 (-) False LOC110492420
XR_002468999.2 mRNA upstream 39619 58886676 ~ 58896965 (-) False LOC110492420
TU1592280 other downstream 89342 58746870 ~ 58747299 (-) True G1394341
TU1591975 other downstream 408528 58424458 ~ 58428113 (-) True G1394067
TU1591868 other downstream 530000 58302511 ~ 58306641 (-) True LOC110492410
TU1591894 other downstream 558214 58274028 ~ 58278427 (-) True G1393997
TU1591827 other downstream 629476 58204759 ~ 58207165 (-) False G1393949
TU1592757 other upstream 264315 59111372 ~ 59112897 (-) True G1394768
TU1593009 other upstream 507143 59354200 ~ 59356849 (-) True G1394978
TU1594716 other upstream 1707699 60554756 ~ 60582035 (-) False G1396467
TU1594714 other upstream 1709981 60557038 ~ 60582035 (-) True G1396467
TU1594786 other upstream 1814499 60661556 ~ 60663516 (-) False LOC118939463

Expression Profile