RNA id: XM_036947432.1


Basic Information

Item Value
RNA id XM_036947432.1
length 4461
RNA type mRNA
GC content 0.46
exon number 15
gene id nr2c2
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 59761804 ~ 59775363 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTGTTCTGATTGAACGTAACCCTGCCTGCTGGTTGCACACTGCAGTTGACAGATGTCTTTGGCCTAGCTCCAGACAGGCCCCTCTAATGACCTTATATCACCATGATGACCAATGTGGAGGTGCTTTCTCAGCAGATAGTGGCGTCTGAGAAGGTGACAGagGTCGCTTCTGACTCCTTGGTTGCCGTGGAGACAGAGGCCACTCTTAACCTTCAGAAGAGAGGGGTCACTCTGAGGGCACAGTCAAGGCCCTCCCTCTGACTAGCTGCTGTTGGCTTCCCTGCTGCTCCcacatGTGCAGACCTCTCCCGCTGACTTGTCAGTGATGAGTGGCTCTCCACAACGCTTCCAGATCATCTCCACTGAGCCCTCAGCCACACCGCAGCACATTCAGattGTAACGGACCAGCAGACGGGTCAGAAGATCCAGATAGTCACGACCATGGATCCCTTCAGCGGTCCCAAGCAGCAGTTTATCCTGGCAGCGGCTGATGGCTCCGGAACGGGCAAAGTCATCCTGACCTCCCCAGAAAACCAGGGCACCAAGCAGATAATTTTCACAACCGCAGACAGCCTGGTACCTGGCAGAATACAGATTGTGACAGATGCAGCGTCGGTGGAGCAGTTATTGGGGAAGGCAGGGGACGTGGGCCGGCCTCAACCTATAGAGTATTGCGTGGTGTGTGGAGACAAGGCTTCAGGGCGTCACTATGGGGCTGTCAGCTGTGAAGGCTGTAAAGGCTTCTTCAAGAGGAGTGTGAGAAAGAACCTGACTTACAGTTGCCGGAGTAACCAGGACTGTGTTGTCAACAAGCACCACCGTAACCGCTGTCAATTCTGCCGGCTGAGGAAATGCCTGGACATGGGCATGAAGATGGAGTCCGTGCAGAGTGAAAGGAAGCCCATTGACCTGcccagagagaggcctgttaaCTGTGCTGCGTCCACAGAGAAGATCTACATTAGGAAGAACCTGATGAGCCCACTCATCGCCACGCCAACCTTCATCACCGACAGTGATGGCTCCAGATCCAGTCTGCTAGACCCAGGGATGCTGGTGAACATTCAGCAGCCTCTGATCCAGGCTGACGGGACTCTACTGCTGGCCACAGACACCAAGTCTGAGTCGGGGCAGGGGGACTTGGGGACCCTGGCCAGTGTGGTGACTTCTCTGGCCAACCTGACCGACTCCCTCAGTGAGTCCCTGAACAACAGTGATACCTCAGACGACCAGCAGGAGGAGCAGTCTGCCAGCGAGATAACACGTGCCTTCGACACCCTGGCCAAAGCCCTGAACCCATCTGAGTCAGGGGTGGGTCAGAACCTGGCGGAGGGTGGGGAGTGTGTGGGCGGAGCCACCATCCAAGTGATCAGCCGGGACCAGGTGACCCCCCTCATTGAGGTGGAGGGCCCactgctcacagacacacacgtcaGCTTCAAGCTGACCATGCCCAGCCCAATGCCAGACTATCTGAATGTGCACTACATCTGTGAGTCAGCGTCccgcctcctcttcctctccatgcACTGGGCAAGCTCCATCCCTGCATTCTCCGCTCTTGGtcaggAGAGTAACACCAGCCTGGTACGTGCCTGTTGGAATGAGCTATTCACTCTGGGGCTGGCTCAGTGTGCTCAGATCATGAGTCTCTCCACCATCCTGGAAGCCATCATCAACCACCTCCAGAACAGCATCCAGGACGGTGTTGTCTGCTGTTCCCCTGTAGATAAGGTGTCTGCGGAGAGAGTGAAGCTGGTGATGGAACACATCTGGAAGCTGCAGGAGTTCTGTAACAGCATGGCtaagatggagacagacagctATGAGTATGCTTACCTGAAGGCCATAGTGCTCTTCAGCCCTGACCATCCAGGCCTGAACAGTTGCAGCCAGATAGTGAAGTTCCAGGAGAAAGCCCAGATGGAACTACAGGACTATGTGCAGAAGACTTATCCAGATGACACATACAGGTTGACGCGTATCCTGATGCGACTCCCTGCGCTGCGTCTGATGAGCTCCAGCATCACAGAGGAGCTATTCTTCACCGGCCTGATCGGCAACGTGCCCATCGACAGCATCATCCCTTACATCCTCAAGATGGAGACCGCCGACTACAACACCCAGATCACCGGTCCCACAGCGTGACCCCCCGCCACCACCCCTATCCACCCCCAAACCTCTCCAGCCCATCTCTAGACTTGTACCATCCAAACAACACCCTAGTTCTGAAACCCCCATCTTTTGTCCTGCAAACATTTGATGTAATTAAAATACTCTTCGCAAGATGCAAAGTCATGGAGAAATCCCTTTCTTCCCAGAAAGTCCGCTCCTCATCGTTTGTGATTATGGGTCGTTACCATGGGGACCCCTGGATGAGGGTTTGATGGTTCTCTGAAAGAGATGCATGATGGGACTGTGAGTCTCTTGTCCAGATTCCGTAATTCAGAGCACTTAACCCCCTGGAGAGGGAGCGCTACTGTGGCTAACACGTCACTGTCACCTCTACTGCTTCAGCAAAATGGCTTCAATGTACTGTAAAGTTGAACTTTTCGCTCAAGCCTTTCAATATGGTTTTATCTTACGCAGGCCTTACTGTACATTCATGCTCAACAAAAAAGTATATTGATTGAGTTACCGCTTGCTTCTGCCTCTAATCTCGATAATCTGTATTTAACACTTAGCCGACATAGACTAAGAATGAGCGACGCTTGCCTGAATGCCGTTACATGAGTAAACTGAGACATGAATTGGTGTAAAGGTTTGTTGTGTTTTTGTACTTTGAACTTTTCACCAGgtattacaatgtaaaaaaagaaaTTTAAATGTATAAATAGCCTATGTTATGATGCTGGTTCATGCCTCGagctctgtctgtccctgaaACGTTTTGGTTGAAAAGATGACCAATTCCTCTAAATCAGGAATATGACTTAGTTCACAGTTTAATAGCAGCTAACCTGGATCCTTAATCTACAGAGTATATGACGATGGACAAGCAAATTTGTGCACTGAGCCACTCCATTCAGGATAATATGACAACTGTTCTCCACTTCAGATAAAACATCAAATCTATTATTTGTTTCAAACCGAACAGGAGAACGGTTAGAATGGTTACATTTCAATTTTGGGGGGTTCAATTTACTGAAATTGTTATGGAACTTTCCCTAAACCAGTCCATATGATGACAGCCTGTTGCTGGGGAGGGTCATCGATCCTACAGAGAAGGAGTTTAATAACAGTCTTGTTAGTATGTCTGCCTAAAGCAAATGCACATTCATTATATGGTTTAACTTGAACCATTTAGATAATGTGTTGAAGATTTTGTTTGTTCAATCACCACATGACCCTGGCTCCAGGTAAAAGTTGCCCTTACCCATAGATATAAGATTAGATTATCCTGGTAGTTCTAACCTTTACTGTTAGAGAGGTAAAATAAAGTTTAACATCAGTGGTTAGGGGCAACTTTATGGCCACCATTTTGTTTTGCTGTCATGACAATCAAGCCTTGTGTGACATGATGTCCTGTTCTGTGTCCAGTATTTCtcttttctgtttatttattcCCATCCAGCTGGTATTATACAGTGCACTGAGTGCAGTAACACACTGCATACTGTAGTGATCTCAGTCCACTTCCAGACTTACTTTACAGTGTCTGTTTTATTCATATGCAGGTATTCACACCatagcaaaaatatatattttgagttCTCAAGACAAAATGTGTTTTCCCTTTAATATTAGCATGATTTATCTATAGTTTCACTGTTGAATGAACATCAAGCAGGTATTTTCCTTTTGTATTCTTGCACAGTATATTGTTCTGTGATATAATAGTTTCCAAAATGTAAAAACGTGGTTTGTTGTGAACAAATGTATTTGTTCCATGTTAATAAGTGTACTTAAAGTACCACACCTCTAGTACCACATGAAAATATGTGTACATTGTCCAACAGCAACAAAACCAGTAACACTAACTTATAACATGTAAAGAAGTAGGTATGTACTCTGAAATGATAGGTGTACTGTTGTAATAGCTGGTTTTAAAACCTGAAAAGACTGTTATTTTGACTATTCTGTGAACTGAGCTCTATACTACATGTATTATCATTCAAATGAGTGCATGTCCTTTTTTTTAATCAGAGTTTTATAATATTGCAACTTGCCAGTATTTGCCCTGAAGAAAATGAgcattgttattgtttttgtatagtgcaTTGCTGTGCATGCAATTGCTTATGCATTTTAGTAAATGCTGTACGAAAAATGTGGAGTTTTAATGTTGTGTCTTACAAATGTTATCAGCCTGAGCAATTTCAATGCATTAACTACTAATTGCAACAAAAACTGTTTTCTATTGTTTACATAGGGGGGATATGGATGGTGTTGTTTTTGGTTTGTAAAAGCCTTTGTGTCATGTCTGTAGCtttttaaatacagtacatataAAAAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1593574 lncRNA downstream 31526 59730042 ~ 59730278 (-) True G1395456
TU1593522 lncRNA downstream 57323 59704264 ~ 59704481 (-) True G1395408
TU1593517 lncRNA downstream 62073 59699479 ~ 59699731 (-) True G1395403
TU1593508 lncRNA downstream 67151 59694061 ~ 59694653 (-) True G1395394
TU1593498 lncRNA downstream 74904 59686466 ~ 59686900 (-) True G1395384
TU1593778 lncRNA upstream 45033 59818833 ~ 59820458 (-) False G1395635
TU1593781 lncRNA upstream 45033 59818833 ~ 59820458 (-) True G1395635
TU1593803 lncRNA upstream 48063 59821863 ~ 59822163 (-) True G1395656
TU1593804 lncRNA upstream 49830 59823630 ~ 59825026 (-) True G1395657
TU1593806 lncRNA upstream 70502 59844302 ~ 59844778 (-) True G1395659
XM_021566756.2 mRNA downstream 9223 59745376 ~ 59752581 (-) True mrps25
XM_036947421.1 mRNA downstream 121076 59541387 ~ 59640728 (-) True LOC110492431
XM_036947423.1 mRNA downstream 121144 59541387 ~ 59640660 (-) False LOC110492431
XM_036947422.1 mRNA downstream 126001 59541387 ~ 59635803 (-) False LOC110492431
XM_036947424.1 mRNA downstream 156947 59541387 ~ 59604857 (-) False LOC110492431
XM_021566761.2 mRNA upstream 14764 59788564 ~ 59795744 (-) True wdr46
XM_036947442.1 mRNA upstream 88666 59862466 ~ 59867257 (-) False LOC110492442
XM_036947446.1 mRNA upstream 88666 59862466 ~ 59867527 (-) False LOC110492442
XM_036947441.1 mRNA upstream 88666 59862466 ~ 59867532 (-) False LOC110492442
XM_036947443.1 mRNA upstream 88666 59862466 ~ 59867533 (-) False LOC110492442
TU1593009 other downstream 404955 59354200 ~ 59356849 (-) True G1394978
TU1592757 other downstream 648907 59111372 ~ 59112897 (-) True G1394768
TU1592300 other downstream 914788 58838756 ~ 58847016 (-) True LOC110491124
TU1592280 other downstream 1014505 58746870 ~ 58747299 (-) True G1394341
TU1591975 other downstream 1333691 58424458 ~ 58428113 (-) True G1394067
TU1594716 other upstream 780956 60554756 ~ 60582035 (-) False G1396467
TU1594714 other upstream 783238 60557038 ~ 60582035 (-) True G1396467
TU1594786 other upstream 887756 60661556 ~ 60663516 (-) False LOC118939463
TU1594806 other upstream 919809 60693609 ~ 60694036 (-) True G1396543
TU1594840 other upstream 979305 60753105 ~ 60754871 (-) True abhd6b

Expression Profile