RNA id: XM_021566824.2


Basic Information

Item Value
RNA id XM_021566824.2
length 2775
RNA type mRNA
GC content 0.40
exon number 2
gene id LOC110492475
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 60689293 ~ 60743762 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCTCTTTCAGGTCTTCAAAACGGAAACACCCCCAACGGTTGCCATTTTACTTTGGCCAACGCTTGACTGCAATTGTAGCTGTCAAAGCAATATTCCAAAGAGTGCACTTCCCGTTAATTGCTGTATGAAGAAAGTGTGTCTCTGCTCGCATTTGATTGAAGTTATCGGCGCTGCTGAGTGGTGCAAGGGGGCAGCGGTTCGCACAACAAAAAGGGCTGATCTCGGACGCCAATATCACCAATGCTACAGATTACAGAACAGATGGTATATGCCATGAATTGTAAGGAAGCCACAGAGAAGGTTGTCCAGTCATGGTCACGTTTCAACTCCGCTGGCCAAACTACTCTACTGGAGACTCTGAAAGCATTCAGTCCTATGTCAAAAGACCTTTTCGATACTGAGAAAGAACTGGCCACTTTTATTGAGGGACTCAAAGATGAAGGTCACAAGCCTACTGTACTTAAAAGCAAAGATGTTTATGGTTACAGGTCTTGTACTGCAGTACTGAGGCCTGTAATAAAGACACAAAGCACACTGGACATTGCTGTCTCAAAGGTTCAAAAGCCTGGCAAAAAGAAGGGTAGAAAACCCCATGGCAAGAAGACTGAAATCAACTATTCTTTGTTAAGTGCAGCAGCAAAAGTTGTCCTGAAGAATCAACCCACAATTATTTTGACAAATCTGTCAAAGGAGTCTCTCAAACAGACTGTCCTCTCTCAACCACCGACCTTGGCTGTTGTGCCTGTTCAGATGCAGTCATACATAAGACTGACCAACATCACTGGACCCTCTACAGGCCACACAGCGAGACTGCAGTTCCACACAGGTGTATGGTCAGGAGAGGTGACTGTGCCCAACTCTCATCGACCACTATCTCTAACAGGTACCCAAGTACAGCCTTCGGAAGGTACCGGAAACTTAGCAAAATCTGTCACTTTGAGGAGAGTGAACTTTTTGCCCTGCCCAGTCAATATCATCGGAGTGCCTGCCATACTGCAAAACGACCGGGTTTTGAAGGAATGCAACGGAATGCCTTGCTGGAGGGACCAGAAAAGGAAAAGGACTGACGAGGCTGAAGACAAACTCTGTGTGAAGAGGCCCAGAAATGAGGTCTGGCTGGTCAAAGAGCAGTCTGAAGACCTTAGACTGAGTGAGAACAACCTGAGGTTCAAGGTGATCAAGGTTGATGACTCGATCACcgatgaggaggtgaggaggaaagCCCAGAAGATACTGCAAGTTAATCTGTCACCGGTCATAGAGATTCAACCACTTATTGCCTACCCAATGTGACCGGCCGTAATATctttggctgcatttacacaggcagcccaattgtttttgttttttttaaacccaaTTATTGGCAAAGATCTGATCAGATTGGCCAAAAGACCAATAATTGCggggaaaaaatatttttaattggTCTGTGTGAACACAGCCTTAAAGTCCTTTTGTCCTCCATGTAAATTTCATCAGTTTGTTGCATCTCATCAAGGCAGTGCTTTGTCTTTTAGCTGTGCTCAGCTTGGGAGTATTGATTGTTTGGGAGGCTTTTTGGAGATTTGGAAaatcctatttctttgttaataTGTTTAGATAAGGGGACGCTGGGTTATTGCCTAAACATCCAAAAATATGGTTTAAAGTTTTTTGTTTACACTGCACATACTATAGACTGCCCCTTGACTGTTGAGTGATGGAATGGTGAAGTGTGAGGCGCAATGGCTGTCCCCATATGAGTTGTACCTGCAGTATATCCTTCTTTACGTGTGTTTTTGGGACACTGTGAAATTTCATTCATCTGTTTTATAAATGATACAAACATCTGATAATGAAGCCATGTCATGTATAACTATGCAGCATTAATTTGCTAGAATATTAGATATTTTATATACATCACTTTTTAGTCATGTCATGTCATTTCTACTGTATGTTGGATTAAAGGGGCAATTGACATGGTGTGTTTTCCTGATGTGTTATAAAGGTAGTTTTTTCTTTTTTGGACATGACAGTTAAGAGATCCTAGCTATATGTTAACATTTTATGGCTTTTATTCTCATTTGTACAAAGTTTAAGGCATTTTATTCCATTATCTGCATTTCATTTGTAGAAGAATTTACATGGCCTTATGAGTTTTCAGTGTTTTTAAAGCCTCTGGAGGAAACGCTCTAGCCTATATTGTGTATTATCTGACATTTAGAACTATTCCTAAAGCATTTTCTAGCTTTGAAATTTGATATTTGGACCTTGTTTTTTTCTGTAATTGGAGGAAGTATGCCAGTTGGTTTCTTTTATTCAAGTATCCAACTCTCCATTAGGTTCAACTGATTTGATTTATCCGTCCTTGACCTTTCCATTCTCAATCGAAGGCAGAGTAAAGCTTTTTTTTGCGTTGGGTTATATTTTGCTTGCTTTGATTTTCATGTGCCAAATTTATATTTTTGGTGCTTCTCAATtgcacttttctttttttttctccttctccCCCAACTGAGAATGTTGTCTCTGTTAGCTACATATTCTAAATCACACATGCTTTGAACAAAATGTCTGAGGCACTTTTAGGTTTGTGAAGAGGTAGAGATACATTTCATGTTCAATGTAGCTTAATTTATATCTATTTAAAAAACaactttttttaaaactttttgtaTGAACCACAATGATACTCTTAACAAAGACATCTGTTAACATGTTATGGTCATTGTGTGTTGGGAATTACTGTTGAACTGTAAAATAAAGCATTTTGACCACTTCTTTCTCTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1594814 lncRNA downstream 4460 60705126 ~ 60705566 (-) True G1396551
TU1594813 lncRNA downstream 5038 60704582 ~ 60704988 (-) True G1396550
TU1594812 lncRNA downstream 6416 60703081 ~ 60703610 (-) True G1396549
TU1594811 lncRNA downstream 7035 60702727 ~ 60702991 (-) True G1396548
TU1594810 lncRNA downstream 7857 60701618 ~ 60702169 (-) True G1396547
TU1596089 lncRNA upstream 49024 60792772 ~ 60793052 (-) True G1397641
TU1596113 lncRNA upstream 152166 60895914 ~ 60905557 (-) True G1397662
TU1596115 lncRNA upstream 165640 60909388 ~ 60911920 (-) True G1397663
TU1596111 lncRNA upstream 168226 60911974 ~ 60914109 (-) True G1397660
TU1596273 lncRNA upstream 340285 61084033 ~ 61085092 (-) True G1397784
XM_021566823.2 mRNA downstream 26570 60682162 ~ 60683456 (-) False LOC110492474
LOC118939463 mRNA downstream 37941 60661914 ~ 60672085 (-) False LOC118939463
NM_001124469.1 mRNA downstream 52682 60653628 ~ 60657344 (-) True LOC100136193
XM_021566818.2 mRNA downstream 57222 60645712 ~ 60652804 (-) False pabpc1l
XM_021566826.2 mRNA upstream 6010 60749758 ~ 60752683 (-) False kctd6b
XM_021566827.2 mRNA upstream 6010 60749758 ~ 60752752 (-) True kctd6b
XM_021566829.2 mRNA upstream 9258 60753006 ~ 60758431 (-) False abhd6b
XM_021566830.2 mRNA upstream 9258 60753006 ~ 60758788 (-) False abhd6b
XM_021566832.2 mRNA upstream 33330 60777078 ~ 60790836 (-) False slmapb
TU1594806 other downstream 15990 60693609 ~ 60694036 (-) True G1396543
TU1594786 other downstream 46510 60661556 ~ 60663516 (-) False LOC118939463
TU1594716 other downstream 127991 60554756 ~ 60582035 (-) False G1396467
TU1594714 other downstream 127991 60557038 ~ 60582035 (-) True G1396467
TU1593009 other downstream 1353177 59354200 ~ 59356849 (-) True G1394978
TU1594840 other upstream 9357 60753105 ~ 60754871 (-) True abhd6b
TU1597246 other upstream 1990995 62734743 ~ 62735569 (-) True G1398619
TU1597892 other upstream 2455371 63199119 ~ 63292201 (-) True G1399235
TU1598025 other upstream 2641101 63384849 ~ 63385262 (-) True G1399367
TU1599309 other upstream 3359622 64103370 ~ 64105039 (-) True G1400503

Expression Profile