RNA id: XM_021566849.2


Basic Information

Item Value
RNA id XM_021566849.2
length 6278
RNA type mRNA
GC content 0.49
exon number 24
gene id LOC110492486
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 60916746 ~ 60970799 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TgaggctgtgtgagtgtgtctgacggtttgtatgtgtgtgagcgggtatgtgagtgtgtgaacAAGGGGAGGATTATTCCTCTGGAATAGGAAGCGTGACCAGGAACACCTTTAAAGGAACCTCAGCATGTTGGGAGGAAAAGAAGGAGAGATGATGATTCCTTTGTTGCTTTGATCATTTAGTGTCCCTGCTTTCCGTCTGTCTGTGGGAATGACTTATTACAGCAACAAGCAAATTGTTTGTTATCAAGTTTAAACAGTTCATGGGCAAAAACATGGATCAGGATTTGTTATGTAATTTGCAATAAATAAAGATATGCTTCAAGTAGAACAGTGATATGAAGAGAAGAAGACTGGGTTTCtgaggacggacagacagacagtattccCTGGGGCACCTCGCTGGGTCCGCTGGCCACTACAACAGAACAGCTACTTTCCTCTCAAATCGGATGTTTTGACAGGACTGCAGACATGCTGTGTGGTCTGAGGAGAGAGGCGAAGAATAGCAGCATCGATGACGGGCCCTACTCTAAGGGCAACAAGGACTCTGGAGGGACTGACCATGCCTCCAGGAGACGCAGTATTGCAGaagacTACCGGGGTGTGACCACCGTGGACCTAATAAAGAGGGAGGGCAGCAGCCTGGGCCTCACCATCTCCGGGGGGTCCGATAAGGACGGCAAGCCCAGAGTGTCCAACCTACGGCCAGGTGGGCTAGCTGCCAGGAGTGACCAGCTGAATGTGGGAGACTACATCAAGTCTGTGAACGGCATCAACCTGTCCAAGCTCCGCCACGAGGAGATCATCAGCCTGCTGAAGAACATCGGGGAACGTGTGGTGCTGGAAGTGGAGTACGAATTACCTCCCTTTGTCCAGAATGCTCCCTCGGGTGTCATATCTAAGACCATAGAGGTGTGCCTATACAAAGAGGGTAACAGCTTTGGATTCGTCATGAGAGGAGGGTTCCATGAAGACTGGCACAGGTCTCGTCCTCTGGTAGTGACCTACGTACGGCCCGGGGGTCCTGCTGATAGAGAGGGCACACTGAAGGCTGGTGACCGCGTGCTGAGCGTGGATGGGATGCCCTTAAACCGAGAGAAGCACGCTGACACCCTCACTATGCTGATGCAGTGTAGCCAGGAAGCCCTGTTCCTGATTGAGTATGACGTCTCCGTCATGGAGTCTGTGCAGCAGGCCTCTGGCCCCCTGCTGGTGGAGATAGTGAAGTGTCCTGCAGCCAGCCTGGGTGTCAGCCTGGCTACTGCAGTGTACAGGAACAAGCAGGTCATCGTCATTGACAAAATCAAACAGGCCAGTGTGGTGGAGAGgtgtggGGCATTGCATATAGGTGATCTTCTCCTGTGTATAGATGGGACCAGTACTGAGCACTGTTCCCTGATGGAGGCCACGCAGCTGTTGGCCCAAACCTCTGACATTGTTAAATTGGAGATCCTGACAGCCAATCAGAGCAGACTTCCCATGAGACCTCAAGACACAGTGAAAGTGGAGAAGAGCAACCTTCACCATTGGGACCCCACTGTTAACTACAGCCACACCCAACACTGCAAGACATGGAGCAGTCCCAGCCACCCACTCAACCAGCAGGACCACTGCACATCTCTGGTGTGTGGTGGCTTCTCCCCTTCCTCCACAGCCACCTCAGGGTACAGCAGTAGCCAGGGCAGCAGCACCCTACCCTGCCCCATCCCATCCACCAGCCCCCGTAACACCACACATAAGAGACGCCAGAGGAGGAAGGAGCACAAGAGCTCACTGTCCCTAGCATCCAGCTCAGTGGGCCCTGGGGGTCAGGTTGTTCATGTGGAGACCAGCGAGGTCATCGTGAGGGGGGATCCACTCACAGGGTTCGGGGTTCAGCTGCAAGGGGGTGTCTTTGCCACAGAGACCCTGACCGTTCCCGCAGTCATCCGCTTCATCGAGCCTGACAGCCCTGCcgaaagATGTGGGTTGCTGCAGGTGGGGGACAGACTCCTGTCCATCAACAGAATCCCTACAGAGGATGGAACACTGGAGGAGGCCAATCAGCTACTGCGTGACGCTGCTCTGGCCAATAAGGTCACCCTGGAGATTGAGTTTGATGTAGCAGAATCAGTGGTTCCCAGTAGTGGCACGTTCCATGTAAAACTGcccaagaggagaggagtggaactTGGCATCACCATCAGTGcaAGCAAGAGACCTGACAAACCTCTGATCATCTCTGATATCAGGAAAGGAAGCATAGCCCACAGGACGGGTACATTGGAGCCAGGGGACAGGCTGCTGGCCATCGATAACGTGCGTCTGGAGAACTGCACCATGGAGGATGCTATGCACGTGCTTCAGCAGGCAGAGGACATGGTCAAGCTCCGGATCCAGAAGGACGAGGACAACGCTGaTGAGCTGGAGATGTCTGGTTCCATTATCTACACGGTGGAGCTGAAGCGTTACAACGGCCCGTTGGGTATCACCATCTCAGGCACAGAGGAGCCCTTTGACCCCATAGTCATCTCAGGCCTCACCAAGAATGGCCTGGCTGAAAGGACTGGTGCCATCCATATAGGGGACCGTGTCTTGGCCATTAACTGTGTGAGTCTGAAGGGGAAACCACTGAGTGAGGCCATCCATCTGCTCCAGATGGCCGGAGAGACTGTCACCCTCAAGATAAAAAAACGTCAAGACGAATCAGATGTGCAGCAGATGTCGGAGCAAGCAGGGTTCCTGAGCGACACAGAGGATGAGCTGACTGACTCTCAGAAGACCAGTAAACATTCAGGGGTGTACTCTGCCACCGTGCCCAGCATGGACTCTGCCATGAGCTCCTGGGACGGCTCCGGCATCGACGCTGACTATGGCAGCCAAGGAACGTATCTCCACAGAGCTGCAGATTTGACTTTCCAGCCTAATGAGTGGAGACGCACCAAACCACCCAGGACCCAACCCAACTCCATCTCCACTGGCCTTACCGGCCTTACCCACCACTCCCACCTCTACGATGGGAGATACACTGAGGATGACTGGGATAAGGCTGCTGGATACGCCAGCCCCCCTAGTTACCATGGCACCCGGAAACAAGAGGATAGCTTCTGGTCCCAGGCACTGCAGGACCTAGAGACCTGCGGCCAATCAGAGATACTCAGGGAGCTGGAGGCGTCCATGACTGGCAGCACTCTCAGCCTGTATCTGGAGGAAACGAGGTCCCAGGATGACTCGGTGCTACAGAGCAGAATCAGTCCTGTGAAGAGGGGTCCCATTCATGACGAGCCCAAAACCAAAAGCAACCTGCAGAGATCAAACAGGACCAGGGACACACCACCCAGGGGGAGAGGGGAGCCCCAGGAGACCAGCTCCCCTACAGCCCTGGAACTACTGAAGGTGACCCTGAGGAAGGACCCAGACTGTGGAGACTTCGGCTTCAGTGTGTCAGACGGCCTCCTGGAGAAGGGTGCCTACGTCAACATGATCCGACCAGATGGTCCTGCCGACCAGGCCGGGTTGAAACCCTATGACCGCATTCTGCAGGTGAACCGAGCAAGGACCAGAGACTTTGACTGCTGCCTGACCGTCCCCCTCATCACTGAAGCAGGAGACAGCTTGGACCTGGTGATCAGAAGGAACCCCCTGGCACAAGCAGATAATGAGCCGCCACAGGACTGCGAGGACCCGTCTGATTCACTGTTGGACTTCCCATAttacaggaccaacagtatcgCCCTGTGACCAAGGTCCAGGTGGGAGATTATGGATTAATAGGCACTGCACATTACACACACTGATTTTGTTTCATATCTcttgtacagacacacacacagaaccacattcACACATGAGCATACATTTGTACGTGAatattcacacagacacactgtcatTCACACTGTGTGACCAGTGTTAGTCAGTCTAATCATGTGatctagagcagagcagaggagactcTGTCAGGCTCCTATGGCTGTTCTGGAAAAAACACATGTCATTACGTAACAGCTTCTGGATGACAACACTAGCGTTGCTCAGTTCTGCAGAAATCCTAGAGACACACTTCCATCCCAGAGAAGCAGGTGTGTTTGGCACACCACCACagcatttatttttaattttatttattgtgTGTTTAATTGACCCTCTGTGACCTTTTGCTGGGTATTGGTGCAgttacatgtacacacacacttgacacacGAACGTGGGCACATGCTGTGCTGGACTATTATTTAAGCCATGGGTTGGCTGGCTgccttctctttcccctcctggCCCACATTGCCAACCCCAAGCAAAAACAGCTAACTAGCACCTCCAAATAGATAGAATGCTAAACTGTCACTCACTGTTACTTGCCAAGTATTGCAAATATTTCTATTTTAGATCCCCCACTCTATCCTGAAGTCTAAAATGTTTGTGAAAATGGACTTGGTGACTCAGGTCCAGGCTTAATCCCTGTTATTAAATGGCCATCATATGAAGGACAAATGCTTACGAACGACTGTTTTATCACACCTTCTACTTTGTCCACAACAAAAGTTACATTTCAGAATGTTTCTTTTTCTCATTACTTTTCTCACTGTTAATAGCTACTGGATAGACAGGGCAGAAGTGTGTCTTTCATACTTCTGGGATCAGTGTTTTTGTTTCGCAAGGTTCTCGTCAACGGTTTTATGTAATCAAGTTCACTATATTTATTTTACTAAGCCACACTTTTGTTGATAGCATGCACTAGTAGTTCACCTAAATGAGATCCATGCACTGGTAGTTCCCCAAGTCAGATCCATGCACTGGTAGTTCACCCATATCAGATCCATGCACTGGTAGTTCACCCAAATCAGATCCATGCACTAGTAGTTCACCCAAATCAGATCTGTGCACTGGTAGTTCACCCAAATCAGATCCGTGCACTGGTAGTTCACCCAAATCAGATCCGTGCACTGGTAGTTCACCCAAATCAGATCCGTGCACTGGTAGTTCACCCAAATCAGATCCGTGCACTGGTAGTTCACCCAAATCAGATCCGTGCACTGGTAGTTCACCCAAATCAGATCCGTGCACTAGATTGACTCGTTTTATCACTCATGATTAGATTGTATTGTACCACGATTGGTGATAGTCACATTATTTTGAAAAGCTTTGTCACCCACTAAAGGAGTGTTCCTTATCATAAACACACTACTTGATTGTGTCGTTCAGGTCACATCTCTTTAGATTTCACCCTCAATATCAGCATCTCCCATGTGAGGCCAGGAGTTTGTCCTGACTAGGAAAAGCTCCTGGCTCTAGTCCTATGTATACACGTTTCAGAAGGCATTATACCAGAGTATCAACTCTCAGGAGTCCAGGGTGTGGTTTCCCCACAAACAGACTCTTAAGTGGATCACGTCCCCTGCCAAATGTGgaataaaatacatttcaattgaGATGAGTGATTTCCTTTAAAACCATTTTCATGTATCCGTTAAGGCCCCAACTCAATAAGGTGTGGCCTTGGATTAGAGTATTTTTCTGAACCTCCATGGCTGTTTCTCCCACCCATGTTGGTAAGCATGTAGCTATAGGATTTAATGCCCCACCTAGTAGAAAGCTCACATTGTTCACAAGGGGGAATTGTGGAACATTTCTGCGCTGAACAATTGCCATCTCTTTCCTACTCCGTCAGACAGAATCTTCCCCGGAGATGTTTCCGTTTTATCATGACATTGCATGGTTTTATAAAGCTCTTACATAACATGTCTAGCCCTGGCCTGCTTACCAAGCTGCCTCAGTGGAAATAGGATGATTTGTTTAATGTAATGTAATGGCTGGTgtagagatgtagtgagactgcAGTCATGCTGTCCCGTTCAGGGCTCAACTATCTGCTTTttaatcctcaggaaggaaaccATGTTTTTAGATTATTTCATCACACATGAAAAATGTTCCATTTGATACAGATGTCtattttgtttttatacattttatttgaggTGCTTCTGAATATTATTCAGTACACGGTCTGTACATGGTCTCCCTAATgtataatgtttttatttgtaatgacATTCTGCGTGTGGTTTCTGTATCTAAGATGTGACTGAGTGCAGTATCTGTTCTCTGTACAGTTCTTCTGTTTACATGGTCCCCCAGCTGCAGCCAATCATTGCTATttaagtagggggggggggtggagtgagCCAATTTGAAGGAATTTGTTTTGTGAGATGTACatgaaatggattacattttattCTTTAATGAGATATTTCCTGCTTTTTATGAAAATAAAGATATGACTGATGGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1596111 lncRNA downstream 2637 60911974 ~ 60914109 (-) True G1397660
TU1596115 lncRNA downstream 4826 60909388 ~ 60911920 (-) True G1397663
TU1596113 lncRNA downstream 11189 60895914 ~ 60905557 (-) True G1397662
TU1596089 lncRNA downstream 123694 60792772 ~ 60793052 (-) True G1397641
TU1594814 lncRNA downstream 211180 60705126 ~ 60705566 (-) True G1396551
TU1596273 lncRNA upstream 115941 61084033 ~ 61085092 (-) True G1397784
TU1596279 lncRNA upstream 125915 61094007 ~ 61094705 (-) True G1397790
TU1596313 lncRNA upstream 175353 61143445 ~ 61144807 (-) True G1397822
TU1596317 lncRNA upstream 186080 61154172 ~ 61154372 (-) True G1397826
TU1596319 lncRNA upstream 188443 61156535 ~ 61156792 (-) True G1397828
XM_021566839.2 mRNA downstream 76718 60833073 ~ 60840028 (-) True LOC110492482
XM_021566835.2 mRNA downstream 104499 60803485 ~ 60812247 (-) True si:ch73-233m11.2
XM_021566831.2 mRNA downstream 125902 60777078 ~ 60790844 (-) True slmapb
XM_021566832.2 mRNA downstream 125910 60777078 ~ 60790836 (-) False slmapb
XM_021566833.2 mRNA downstream 125910 60777078 ~ 60790836 (-) False slmapb
XM_021566855.2 mRNA upstream 4930 60973022 ~ 60979513 (-) True LOC110492489
XM_021566879.2 mRNA upstream 193880 61161972 ~ 61241874 (-) False LOC110492499
XM_021566878.2 mRNA upstream 193880 61161972 ~ 61241876 (-) False LOC110492499
XM_036947494.1 mRNA upstream 193880 61161972 ~ 61241877 (-) True LOC110492499
XM_036947497.1 mRNA upstream 361249 61329341 ~ 61456465 (-) False LOC110491138
TU1594840 other downstream 161875 60753105 ~ 60754871 (-) True abhd6b
TU1594806 other downstream 222710 60693609 ~ 60694036 (-) True G1396543
TU1594786 other downstream 253230 60661556 ~ 60663516 (-) False LOC118939463
TU1594716 other downstream 334711 60554756 ~ 60582035 (-) False G1396467
TU1597246 other upstream 1766651 62734743 ~ 62735569 (-) True G1398619
TU1597892 other upstream 2231027 63199119 ~ 63292201 (-) True G1399235
TU1598025 other upstream 2416757 63384849 ~ 63385262 (-) True G1399367
TU1599309 other upstream 3135278 64103370 ~ 64105039 (-) True G1400503
TU1599365 other upstream 3288834 64256926 ~ 64257433 (-) True G1400552

Expression Profile