RNA id: XM_036947503.1


Basic Information

Item Value
RNA id XM_036947503.1
length 6542
RNA type mRNA
GC content 0.56
exon number 20
gene id LOC110492491
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 61525712 ~ 61551754 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCAGCGCTTTGCTGTGGTGGAGAAGAAGGCATACGTCATATTCACAATGGCGGAGGCAGGGTGAGGAGTAGAGTGTGTCAGTTAAGTGGCGCAGTAACCAACTACATTGCCCGCGAAAGACGCTAACGGTGCCCGAAAAATGGCCCTGAACCCTGAAGTGGAGAGAAAAACTGACATAGAGTGTCTGAAGACCGGTGAGCTCGACTTGGAGAGCTGCGATAGCAAGACAAATTCGTTGTCAGCCGCCATCTCGGCCACATCCAACCAAAATGGCGATCAGACTGGATGTGAAGACGGTGTAATGCCCGAACAAGAAGCCTCTGAGCGGCGGAGGAGCGGGCAGACTGCCGCGAGAAGCTCCGATAATTCACCTTTACCCGGCCAGAGACAGGCTGAAGAGTTGCCAAGGAGAAATTTTCAGATCCCGAGGAAGATCAAGGAACGGAAAGGCCTGTACCAGTTTCTGGCCCCTGACTCCCGGGAATTTGAGGGCCTTGTGAAGatcctctcctccttctaccTGGATGCATCATCCAGAGGGACATTCTCCTACTGCAAGGCCAGGCTCATTCACAATGAGCTGCTGGAGAAAGAGTTCATTGAGAAGAGGAGGGAGCTGAAGCAGGAGGGCCGTACAGACCCAGAGCTGGTGGAGTCCTACTGCTTCCTGTTCCCAGACAAGTCCAAGCTCCCGTGGATATGTGAGAAGGGTCTGTCTGTGGGACACTCCAGGATCACTACACTAGGAAATCCTGctatggGTGTTTATCTGTCTAAATTCTCTGATTTGCTTCAAATGAACCCGTTTGAAGCAGGCAGTTGTGGAGACATTGTCATATTTAAAGTCATGAGGGGACGGCTGAAGAGCATCTTTGAGAACATGCCTAAGAGTGTCCTGGACCCCACACCCAAGTTTGACTGTCACATCTCCAAGAACGCCACGCGGGTCACCTCGTTGCTGTCCTACAGAGCCTTTGAACTCACGCAGCAGTACTTCTATGAGTTTGCTTTTGATGAGATCAAGCCTCGGCCCAGACATGTGTGTCCCTACGCCGTGGTGTCTTTCCAGTACAAAGGCAAGGAGTCTGCTGCTGCACCTATGGCTGCACACAGGTTCAACAGCGCTGTCTGTGAAGGAGGAAGCAAAGGGAGGAGTAGCTACACTGTGTGGAGTGGGCCACTGGTGAACAAGGGACAGGAGTTGTGCCAGGTGTCTCTACGCTCCTCTACACGCCACTTCCTCCCTTTCAAACTAACGGAGAAGTTGGAGATGAGTATGGGGATGCAGCTGGACCAGGTGAAGAGGAAGAtcccctctgttctgttctcctgggACACCTACAGCAGAACCCGGGAAGtgctgAAGTGTGGGATCTACTGCAGCCTGTTTGAGGTGGTGGATGGGAAGGGTAAAGCGACCAGCAGCACTCTCTCAGGACTCATACATAAACTGGAGAGAGAGCGGATGGTGCTGGTGAAGCCTTTAGTTGATAAAGGCTTTCTCTTCCTCTTGTCATCTACTCAGATGTTCAATCCCAATGAACGTCGGGGGAGGGTTGAGAAGAGCCTGCAGGCACTGTTTGTCTTTCAGGAGTCCAGGGGAGTCACCAAGTTCACGCCCAGACTGTCAGAGCAGGAGCCCCTGTCAGCTGAGCCCCTGCCCCCCCTGCTGGCCTCCATGGACCCCTTCATTCCAGCCCTGCACTACGCCTTGCTCAAGATGCGCTCCACCCCCGATAACAAGCACCTCAGCACCGTGGTGGAGCGCCAGGCCCTAGACTATCTGACCAGGAGGGACAGCGGCCGGGCCTTCCTCCTCCCAGAGTACCAACAGAACCTGGACGAGAGGGGCAATGTGCAACCCGCGCCCCGCCCCAAATCCAACATGGAGGGCCTGCTGCGTTCCTACTTACATGGCCTCTCCTCGGCCTACGTCCTTCCCATTGTCAAGGCCAGGGACATGATGGACAGGATCAACCAGCCCCCGCCTGCCCCTGCTCCAACTGTCCCGGACTACAGCCCTGTGTCAGACTGGGGGGGGTCAGGAGGgtcagacagaccagagagggtggagaggcaACCTCTAGAGAGACCagagagcagcaggaggagaggggggccgTCCCAGACCCATTCTAACGGGGCCGCAGCAGGGACAGGGGCCCCGCCCCAGAGGTCCAGGTTGGCCCAGAGTGAGTACGATAAGGACAAGATGAAAGAGTTGCTGAAGCTGATCCAGCTGCATAAGGCCCTGGTGAAGGAgccaggagggaaagagagggcagaggggggtGACGAGGGTGCCTGGGAGGGCCCCCACGGTCTGAAGAGGAAACTAGAGGAGGACGAATCAGGGgccatgtctaaatacctacgaGGAGCCCACTTCAGCAATGGAGAGCCCAGTAGAGtAGCCcagggggaggaggtagagaactACAACCTGGCAGCAGTAATGGAGAGCATGGGGATCTATGACACTGACCTGAGGGACAGGGGAAACACTTCCCAGGCCTCCTCAGCCAACGAGACACAGCGCCTGCTCAAGATCCTGCTCTCCACTCTCAACAAGGCCATGGTTCAAGGTGCTGCCGCAGGCCCCACCGACCTGCCTGACCACGTGGAGCCCTCCACGGAGAACCCCCTGACTGGAGCTCCGATTGAAGGGCGAGTGGAGCAGGCCCGACAGGACTTCTTTGAGgaGCAGACTGTGTGCAGTCTGACCAGCCCCTTTAGCGCTGACTCTCCAGGACAACAGCCACACACCTCAGACAACCCATCACTCACCTGGGAACTGGCCTCTCACACAGACAAACCTATCCCCTTCTTTGAATCTCAGAACGACGGCAACTTTGAGCAGAGGGGAGGTctggaggggggtgagagaggtctGAGAGGTGCCTCTGTGGAGCAGGAGAGGGTAACCAAGGAAGCCTCAATAGAGAGGGGAGCCAAGGGGGCTTCCTTGGAGAGGGAGATGGCTCTGAGGGGAGCTTTTCTGGAAGGGGGAGCCAGGGACACCTCCCTAGAGGGGGAAAGCAAGGTGGAGAAGCCAGCCAGGGGTGTTTCCCTGGAGAGGGTAGCCAGGCCGTCCAGCAGTCTGGACACTATCGTAAGCCAGGAGCTCCACTGCCTCTCCAACTCCATCCAGGGCCTCATGGACAACCAGAAGATCTACTACAACTCCCAGCTGCCCCAACGGCTGTCTCCACGCCACGCCTGGCAGCCCAACAGCTCATTCTCAGACTTTGTGGCTCCCTATGTTGTGTCTGTCCCTGTTCAGGGCCACGTCAACACCCTGTGTGAGAGAATGGGCCGACTAGTACCCAAACCTCGCCACACAGACTCTGCTAAAACACCTGGGGCTCGTTCTACCCTCCATGTTCCCTCCGCCACTACCCATCCTATTCCTTCTTTCCCTCACCCGccccattccctctcctccatccctccccttccTTCCATGCATCACCTTCCACCCCCGCCTGCCCTCGTCCACTCTCCTGCCCCTGTCCTCATCACATCCCCCACCGCCAAGCCTGTCCCCAAAACCAAAGCACAGGCCCCTCAGGCTAAGAGCTCCTCTTCTTCCCAGAACCGGCCCAAACATGTCCCATTCAAACAGACCCACAAGAACCCCTCTGCAGCACAGAAGCCCTCCACAGAGAGGAAGTCAGAACCATCTGCCTCAAAGAGAGAGGTCTACTCTCCCGCCCAGGCCTCAATGGACTCCTCAGACTCCACCCCAAAACGGCCTAAACAAGATGCCATCACAGCCCCCTCTCCCCTTACCCCGGCGTCAGCTGCTGGACTACTGATGGGCCAGCTGAAGCCTGAGGTGTTCAGCAGCCTGGTGGAGATCTTCAAGGACGTGCAGAGGAACACGGTCAGATTCTACATCcactctggagaggaggaggagagtgacaTCTGTGTGGAGATCAAGGAGTACTTGCTGAGCCTGGGCAACACGGAGTGTAACCCCCAGATGTTCCTGGAGAATAACAGCAGTCTGGATAAGTTGCTCATCGTCATTCAGAACGAGGACATCTCAGCCCACGTCAACAAGATCCCAGCTCTGGTGTCATTGAAGAAGCTGTCCACGGTGAGCTTTGCAGGAGTTGACAGTCTGGACGATGTGAAGAACCACACCTACAACGAGCTCTTCGTCTCTGGAGGATTCATAGTGTCTGACGAGTTTGTCCTCAACCCAGACTTCATAACACACGACCGGTTGCAGGCGTTCCTGCGGTTCCTAGAGGAGCAGAGCTCTCCAGAGAACCCCTGGCAGTGGAAGATTCACAATAAGTCCCAGAAGAAACTCAAAGAGCTGGGCAGGTTGAACAATGATGCCATGGCTCTCCTCAACCTGCTGACAGCCTATCAGAAGAAGCACCTGGTGGAGTTCTTGCCTTACCACGAGTGTGACGCCCAATCACGTCAGGCCCCTGATCTGGACTGCCTGGTCAAGCTCCAGGCTAACCACACCCAGCACCGCCACTTTATCTTCCTCACAGAGAGGCGCTTTGAGATGTTCATGCAGTACTCCAGGAACGGCATAGTGATCGCCAGCATTGATGACATCATGACCAGTTTCCACAGCCTGATTGGCTCCAGAGTGCATGATGAGTGTATAGAAGAGGAGGATATGTCGCTGGACTCTGATGACGACAGCCACAACCAGGTGATCGTAGAGCATCCTGCCCAATCCCAGGAGGGGGTAGCAGCAGCGGGCATGGGGGACTCAACCCAGCAGCCCCCCTTACCAGAGTCAGATGAGTTCCgcccccctctccccgaccaGCTCAACACCCCTGGCCgacacaccccctcctccatctcctacTCCAGCAGAACCCCCAACCTGTCCAACTTCGCTGCTCTCAAATCTGCCATCTCCCAGTTCAAAGCCTCCAACCAGATTGCTAGGGCGGACATAGGCAGCACTTCGCCAGGAGGGTTTTCTGTCAACCCCCACCAGAGCTTCCTGTGTCCGTCTACCCAGTGGGTGTCCTACTCTGGCTCCTCCGGCTACACAGCCTCCCCAGCCTACCCCGCCTCGCCCTGTAGCACCACACAAGAACAGGACTACAGAAACCCAGCCGCAGTACCTACTACAGCCCCAGGTTCCACTCTGACCAGCCAGGCTCCCCTCACCCTACCGGACATCCCCCAGCCTCCCCCACTTCCTCCACATCTCAAGATGGGTGGGATTCTGTCCCAGTCGTTTAGCCTACCTGGCTCTGTTAGTGGAGCGGCCGGGGTTGGTGTTGGAGCATCTATCTCCACAGTCAGCAGCACTAGCACTCTGCCCATCACAGCCATAGTggcctcttcctcttctctctccactgcaCTAACATACTCCGACCCTACTGTTGCCACCACAGCCTCCTTAGGCCTGGACTACTCTCAGAGCGACATGGTCCAGCTTGGCTACCCGGCAGCGGTCAGCTCCAGCGCTAACGGGACCCCCACCCAGCAGGGGGACAGGAGACTCAGTGGGCCTGGGGAGAGCCCATGGGGGTTAGGAGGAGGAACCCCTAACAGCCAGGGAGGGGCCAGGCCTGGCTCTGTCTCCCATAGCGGTCTCACCCAAggcggggagagggagaggacaggcacTCCTGGTGGCAGTACCCCTGGAAGTCAGGGGGGCAGGACTCCAGTGAACAGTGTAGAAAGCCTTGGAGCGGGTATGGCTGTTCCCTCTGTGGCCACCAGGGGGGGCTCAATAGCTAGGCCCATGCTGCCCATCCATGGGACTGGAGGCAGTCGAGGTGGAGAGGCCAGTGTCCAGCCACTCAGCGGTGGTGGCTACGGCTGTTTAGGTGCCATGCCTGGACAGATGGGTATGGGACGTGGCGGCATGGGACGCGGGGGTATGGGTCCCTGGTCGTTAGGGGGGTACAGAGGGAGAGGAGCCCCACAGAGAGGCCCCTGGCCCAGGCCGGGAGTGGGACCCGAACGGCCGGATGGAGGTGGACCCTGCGGACCCTCCTGGGGTTACccgaaggggaggggagggggacaaGATTACTACTCAGATTACACATACTCACACAACTACTCCCCCTGAACAGACAATCATGATTACAGAGGGGGGAATGGACATGCCACACTCAGAGACTGGTAGAGCTGTCTGAATGTACATATTGACTTGTCATAAACACTTTGAATTGATAATGGTCAGAAGGATcctgttttttttacaaataaactTGATACAGGCAGTGCCGAGTGTCGATACTGTCGTAACCGTACGCTCTTTACATGTAAGCTGTTTCAAACCCCTGTTCCGACCACTATATTTATAATTGTCAAGAAATGTATTGGCCTTCCAAGCGTCTcggttttgttttatttttttattcttttatttttattttttcggTTTGTGAACAAGGGGAGAAAGGCAgactatttttttaaagaaagaaaaaagatcAGTGAAAGGCACCACTTTCGCTGTTGGTTTTCTTTTTTACATCCTTGGTTGTTCCCCCAAAAAGATCTATTAAAATAAACATGTTTCAAATCA

Function

GO: NA

KEGG:

id description
K21873 FAM208A; protein TASOR

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1596492 lncRNA downstream 17849 61492168 ~ 61507863 (-) True G1397992
TU1596447 lncRNA downstream 105112 61420186 ~ 61420600 (-) True G1397951
TU1596310 lncRNA downstream 366051 61158624 ~ 61159661 (-) True G1397819
TU1596319 lncRNA downstream 368920 61156535 ~ 61156792 (-) True G1397828
TU1596317 lncRNA downstream 371340 61154172 ~ 61154372 (-) True G1397826
TU1596534 lncRNA upstream 52192 61603946 ~ 61604162 (-) True G1398030
TU1596537 lncRNA upstream 54255 61606009 ~ 61606353 (-) True G1398033
TU1596539 lncRNA upstream 60417 61612171 ~ 61612404 (-) True G1398035
TU1596540 lncRNA upstream 62484 61614238 ~ 61614440 (-) True G1398036
TU1596545 lncRNA upstream 68079 61619833 ~ 61620260 (-) True G1398041
XM_036947498.1 mRNA downstream 69246 61329341 ~ 61456466 (-) True LOC110491138
XM_036947497.1 mRNA downstream 69247 61329341 ~ 61456465 (-) False LOC110491138
XM_036947494.1 mRNA downstream 283835 61161972 ~ 61241877 (-) True LOC110492499
XM_021566878.2 mRNA downstream 283836 61161972 ~ 61241876 (-) False LOC110492499
XM_021566879.2 mRNA downstream 283838 61161972 ~ 61241874 (-) False LOC110492499
XM_021566873.2 mRNA upstream 576 61552330 ~ 61557902 (-) False asb14b
XM_021566872.2 mRNA upstream 576 61552330 ~ 61558336 (-) False asb14b
XM_021566871.2 mRNA upstream 576 61552330 ~ 61558422 (-) True asb14b
XM_036947505.1 mRNA upstream 6946 61558700 ~ 61594821 (-) True dnah12
XM_021566896.2 mRNA upstream 43339 61595093 ~ 61596712 (-) False LOC110492509
TU1594840 other downstream 770841 60753105 ~ 60754871 (-) True abhd6b
TU1594806 other downstream 831676 60693609 ~ 60694036 (-) True G1396543
TU1594786 other downstream 862196 60661556 ~ 60663516 (-) False LOC118939463
TU1594716 other downstream 943677 60554756 ~ 60582035 (-) False G1396467
TU1597246 other upstream 1182989 62734743 ~ 62735569 (-) True G1398619
TU1597892 other upstream 1647365 63199119 ~ 63292201 (-) True G1399235
TU1598025 other upstream 1833095 63384849 ~ 63385262 (-) True G1399367
TU1599309 other upstream 2551616 64103370 ~ 64105039 (-) True G1400503
TU1599365 other upstream 2705172 64256926 ~ 64257433 (-) True G1400552

Expression Profile