RNA id: XM_021566896.2



Basic Information


Item Value
RNA id XM_021566896.2
length 593
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC110492509
representative False

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 61595093 ~ 61601423 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CACAGGAAAACTCACGGGATTTCATTGATTCCCCCAAAATGATTGGTTAGAGACTGCGATGACGCCTGGGTCATGTGGTAAGAATCGTGCGTGTGGCTTTTTTTCAGTACCCAGACGCTGAAGCAATGGGCAAGTGCCGGGGTTTGCGTACAGCCAGGAAACTGCGTAACCATCGCAGGGAGCAGAGATGGCATGACAAGCAGTATAAGAAGGCTCACCTGGGCACTGCCCTGAAGGCCAACCCATTCGGAGGGGCATCTCATGCCAAAGGCATTGTACTTGAGAAAGTGGGTGTTGAAGCTAAGCAGCCCAACTCTGCCATCAGGAAGTGTGTCAGGGTGCAACTCATCAAAAATGGCAAGAAGATCACAGCTTTCGTCCCCAATGATGGCTGTTTGAACTTCATTGAGGAAAACGATGAGGTGTTGGTGGCAGGATTTGGTCGGAAGGGGCACGCCGTTGGTGATATTCCTGGTGTCCGCTTCAAGGTGGTCAAAGTAGCTAATGTCTCACTACTAGCCCTTTACAAAGGCAAGAAAGAAAGACCTCGATCATAGAATGTATATACTCAAACAATAAAAAGTGGAAAATAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1596492 lncRNA downstream 87230 61492168 ~ 61507863 (-) True G1397992
TU1596447 lncRNA downstream 174493 61420186 ~ 61420600 (-) True G1397951
TU1596310 lncRNA downstream 435432 61158624 ~ 61159661 (-) True G1397819
TU1596319 lncRNA downstream 438301 61156535 ~ 61156792 (-) True G1397828
TU1596317 lncRNA downstream 440721 61154172 ~ 61154372 (-) True G1397826
TU1596534 lncRNA upstream 7234 61603946 ~ 61604162 (-) True G1398030
TU1596537 lncRNA upstream 9297 61606009 ~ 61606353 (-) True G1398033
TU1596539 lncRNA upstream 15459 61612171 ~ 61612404 (-) True G1398035
TU1596540 lncRNA upstream 17526 61614238 ~ 61614440 (-) True G1398036
TU1596545 lncRNA upstream 23121 61619833 ~ 61620260 (-) True G1398041
XM_036947505.1 mRNA downstream 272 61558700 ~ 61594821 (-) True dnah12
XM_021566871.2 mRNA downstream 36671 61552330 ~ 61558422 (-) True asb14b
XM_021566872.2 mRNA downstream 36757 61552330 ~ 61558336 (-) False asb14b
XM_021566873.2 mRNA downstream 37191 61552330 ~ 61557902 (-) False asb14b
XM_036947502.1 mRNA downstream 43339 61525712 ~ 61551754 (-) False LOC110492491
XM_021566892.2 mRNA upstream 90535 61687247 ~ 61689079 (-) True LOC110492507
XM_021566869.2 mRNA upstream 182406 61779118 ~ 61796706 (-) False LOC110492496
XM_021566866.2 mRNA upstream 182406 61779118 ~ 61796707 (-) False LOC110492496
XM_021566868.2 mRNA upstream 182406 61779118 ~ 61796715 (-) True LOC110492496
XM_021566897.2 mRNA upstream 217832 61814544 ~ 61941054 (-) False LOC110492510
TU1594840 other downstream 840222 60753105 ~ 60754871 (-) True abhd6b
TU1594806 other downstream 901057 60693609 ~ 60694036 (-) True G1396543
TU1594786 other downstream 931577 60661556 ~ 60663516 (-) False LOC118939463
TU1594716 other downstream 1013058 60554756 ~ 60582035 (-) False G1396467
TU1597246 other upstream 1138031 62734743 ~ 62735569 (-) True G1398619
TU1597892 other upstream 1602407 63199119 ~ 63292201 (-) True G1399235
TU1598025 other upstream 1788137 63384849 ~ 63385262 (-) True G1399367
TU1599309 other upstream 2506658 64103370 ~ 64105039 (-) True G1400503
TU1599365 other upstream 2660214 64256926 ~ 64257433 (-) True G1400552

Expression Profile