RNA id: XM_021566892.2


Basic Information

Item Value
RNA id XM_021566892.2
length 1833
RNA type mRNA
GC content 0.46
exon number 1
gene id LOC110492507
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 61687247 ~ 61689079 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGAGTCACAATCTGCCCAGGGCGAGGGCAAGACGCATGCTAGAACCCGGTTAAGGAGGCACGCGCTCCAGTCTCTCACCCATGCCAGTCTTTAAACTCGTTTAACGTCGCTTTGCAAAACACACAATTACAGAAGTGGTTTTTAATTTATATGCGCGCAGGGGAACGTAAACAGGGCTGAATTCAGCAAGAGGCCGAATCCATTCACTGCAACTGTTCTGAAGAGCCACAGAGTAAGTGTGTTGACAAGGACTCCGGGAGAGTGTGTGAATACTCTCCACGACAAAAGAAcgacagggaggaagaggatacATTTAAATCGTATTTTTTTAATTGTCCTTATTTTGGAAGAGAAAATGAATGCCGGGGAAGAGAACCTGCTGAAGTCCATCAGCAACGACACTCTACTCGACCTGACGCAGCGCTATGGCCAGTCCGCATTCGGTTTTGGACCTGGTCAGGTTACTGGAAGTTCTGGAGGGCGCTACCCTCTCACACCGGCCGCCGACTTCCTCCACGGTCAGACGGGCAAGTCCAACGAGAGCGGCGGGGAGCAAACCAGCGATGACGACGACAGTTTTGACCCTCTGGACCCCCGGAAGAGGGGCTCGGGCTTCGACGATGACAAACACGGGGGTCCCCTTTCTAAGAAGCCCAAGGAGCAGCGGTCTCTGCGCCTGAGCATCAATGCGCGCGAGAGGAGACGGATGCACGACCTGAACGATGCGTTAGACGGCCTGCGCTCTGTGATCCCATATGCGCACAGCCCGTCGGTGAGGAAACTCTCCAAAATAGCCACTCTCCTCCTGGCCAAGAACTACATCCTCATGCAGGCACAGGCTCTGGAGGAGATGAGGCGGCTGGTGGCTTATCTGAACCAGGGACAGAGCATCAACTCGCCCATCCCCACCGCCCTTGCACCCTTTGGACAGGCGGCCGTGTACCCTTTCACGGGCTCGGCACTCGCCACCCACGCCGATAAATACTCAGGGACAACTGCAAGTCTCTTCAAGCACCACAACGACAAGCCTTGATATCGTTTCTCTGTATATACCCGAACTTCATCCAATTGTATCCATatatcggtctctctctcccactttctatAGTTATTTGAATACGTTGGAATGGGGACTAGGCCTACAGAATAAAGTCTAATGCGTAAATCCTAAACTATGTTTAAATAACTGCTGCCATGTTTCATCCAGATTGAACAAAAACATGAAAAACAACACTGGCCTTTACTAAaggctagattagggttggagctaaaaaatagctttttttttaaatatgggaGAAAGTGTTTATCTTTCCCTAAACTCTCCTCAGAGTTAAAGGAATTTGATGAGTTGTTGTGGCCGTGACTTACCATGTTTTAATTGACAGTTTGACATTTTATGTGTGACCATAAAAACGGTACCCTTGCAAAAGTTATGAGTGATCTAAATATCTCATTCTTGTGTACTATGCAACATTCAGCAAAACGAAGAAAAATACGGAGAGAGATGACGAAAACGCTTTCCAGTGTCCAAGTTCTTTTGCAGCACTGTACATTTTGAATCAACTTTCCCTAATTTTAACTGATGCTATGTGGGGAAACACTAGTTTATTATGTCATATATTTTTGAAAAGATGTATTGAGGATTTTGGTTTGGTTATTGCACAATTCACATGATTGTAAGCTATTGTACAACTGTGGAAAACTACTTGATCAAAGTACTGCTATGACATTGGTTTTCAAAACAACAGCCTGACGAAGCATTTGGTTGTGTTGCAACATGAATTTCATATATTGTTTATATGTCTttataaataaaacatatatcTATG

Function

GO:

id name namespace
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09086 BHLHB4_5, BETA; class B basic helix-loop-helix protein 4/5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1596558 lncRNA downstream 47863 61637703 ~ 61639384 (-) True G1398047
TU1596549 lncRNA downstream 57568 61627622 ~ 61629679 (-) True G1398045
TU1596548 lncRNA downstream 63409 61623555 ~ 61623838 (-) True G1398044
TU1596547 lncRNA downstream 64392 61622290 ~ 61622855 (-) True G1398043
TU1596546 lncRNA downstream 65439 61621014 ~ 61621808 (-) True G1398042
TU1596612 lncRNA upstream 43495 61732574 ~ 61732821 (-) True G1398101
TU1596621 lncRNA upstream 54749 61743828 ~ 61744029 (-) True G1398110
TU1596627 lncRNA upstream 66892 61755971 ~ 61757890 (-) True G1398116
TU1596629 lncRNA upstream 73446 61762525 ~ 61763237 (-) True G1398118
TU1596635 lncRNA upstream 83962 61773041 ~ 61778018 (-) False G1398120
XM_021566895.2 mRNA downstream 85824 61595093 ~ 61601423 (-) True LOC110492509
XM_021566896.2 mRNA downstream 90535 61595093 ~ 61596712 (-) False LOC110492509
XM_036947505.1 mRNA downstream 92426 61558700 ~ 61594821 (-) True dnah12
XM_021566871.2 mRNA downstream 128825 61552330 ~ 61558422 (-) True asb14b
XM_021566872.2 mRNA downstream 128911 61552330 ~ 61558336 (-) False asb14b
XM_021566869.2 mRNA upstream 90039 61779118 ~ 61796706 (-) False LOC110492496
XM_021566866.2 mRNA upstream 90039 61779118 ~ 61796707 (-) False LOC110492496
XM_021566868.2 mRNA upstream 90039 61779118 ~ 61796715 (-) True LOC110492496
XM_021566897.2 mRNA upstream 125465 61814544 ~ 61941054 (-) False LOC110492510
XM_036947507.1 mRNA upstream 125465 61814544 ~ 61941054 (-) False LOC110492510
TU1594840 other downstream 932376 60753105 ~ 60754871 (-) True abhd6b
TU1594806 other downstream 993211 60693609 ~ 60694036 (-) True G1396543
TU1594786 other downstream 1023731 60661556 ~ 60663516 (-) False LOC118939463
TU1594716 other downstream 1105212 60554756 ~ 60582035 (-) False G1396467
TU1597246 other upstream 1045664 62734743 ~ 62735569 (-) True G1398619
TU1597892 other upstream 1510040 63199119 ~ 63292201 (-) True G1399235
TU1598025 other upstream 1695770 63384849 ~ 63385262 (-) True G1399367
TU1599309 other upstream 2414291 64103370 ~ 64105039 (-) True G1400503
TU1599365 other upstream 2567847 64256926 ~ 64257433 (-) True G1400552

Expression Profile