RNA id: XM_021566868.2


Basic Information

Item Value
RNA id XM_021566868.2
length 5084
RNA type mRNA
GC content 0.48
exon number 6
gene id LOC110492496
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 61779118 ~ 61796715 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCATTGTAGTGACACCAGCGGAGCGTTCAGATCCCATGGGAAAGCCACATATCGTTGCCCCACTGTGTGCAGGGCCACTCACCTTTCAAGAAACCCAGTGTCGCTGTCGTAAAGCTCAGTCTAGAACCCGGATGAAACCAATGGGATAGAACAGCCATTGGGGGAAGTGCTGCACGCTAACTGTGGAGGGATCTCTGGAGTGAAAAAAAAAAGACGTAAAAGATTTAACTGTGGACAGAGATTGTACAGGATCCAAAAACAATATTCTGTGGAGATCTAGAAATATTATCCGGACTTATTTAAGCTTGGACATTGAATCCGAGCGGACCGGATAAGATACTTGCACTGTGGGAGTTGATCTGGGGATACAAGCAGTGGAAAAACACTTTAGCTAGCCTAGCCAGCTAACTGAGCTAGGAACCATCGAAAACCGGAGCATCAGATACACTGACCTGCTAGGCTCCGTGCGAATCCAGGGACTTGCTTAATGAATTATGTCTGCCACAAGCATTGACCCTCAGAGATCAAAGGGACAAGCATCTAAAGTGCAAAATGGTTCGCTGCATCAGAAGGAGACTGTCCACGACAATGACTTTGAGCCGtacctcactggccaatcaaccCAGGTGCGTGACTGGCCGCAGAACAGCAGCTACCAGTCCATGACCGACccctacctgtccagctactaCGCCCCCTCCATCGGCTTCCCCTACCCCCTCAGTGAGGCCCCCTGGTCCACTGGTGGAGACCCCCCAATCCCTTACCTCACCCCCTACGGACCCTTGAGCAATGGAGACCACCACTTCATGCCCGACACCGTGTTTGGCCAGCCTGGAGGGCTTGGCAGCAGCATCTACCCCCACCGCTTTAACTTTTTCCCTGAGAACCCGACCTTCTCCGCCTGGGGCACCAGTGGCTCTCAGGGCCAGCAGACTCAGAGCTCAGCCTACGGTGGCAGCTATAGCTACCCTCCCAGCTCCCTGGGTGGCACACTGGTGCCTGACGGCCAGACAGGCTTCCATAGCGACACCCTCAACAAGGCCCCTGGCATGAACAGCTTGGAGCAGGGCATGGTGGGCCTGAAGATCGGTGGTGACCTCACAGGCCAGGGGTCAGGAATCAAGGCTGTGGGCTCTGTGATTGGCGGACCGCCGGTGGTGGCACAGGGGAACGGGGGTACGTCCATCGGTATGCCCCCGCCGAAGCCCGCCTCCTGGGCGGCCATCGCTAGTAAGCCGGCCAAACCCCAGCAGCTGAAGAACAAGGTGAAACCAGGCATGCCCAGCCCTGGGGGAACCCTGCCCCCTCCGCCCATCAAACACAACATGGACATTGGCACTTGGGACAACAAGGGGCCTATGAATAAAGTGGCCCAAGCCCCCATGCAGCAGCAGCAGGCTATGAGCATGCCCCATGGCCAccccatgcagccccagaccCCCATGCAGCAGAACCCCATGCAGCCCcctccccagtccctgctgcagcaGCAAATGCAGCCCATGGCCTTACACCACCAGCACCCTCCTCAACCCTACCAACACCAGACCCAACCCCCACCTCCCCAGACCCGCTGGGTCGCCCCGCGCAACCGTAACCTTGGATACGGACAAGGAGGGGCCGGCATGGACGGTAGCAGTATGATTGGCATAGTCAGCGGGGGTAATGGCGGTCCCCCTGGTTCTGTCGGTATGGTCCCTGGTGGAGTGGAGAACCACCCAGTGTTGGAGAAGCTGCGTGCCGCCCACAGCTACAACCCCAGGGTGTTTGAGTGGAACCTGAAGAACGGCCGTGTGTTCATCATCAAGAGCTACTCTGAGGACGACATCCACCGTTCCATCAAGTACTCCATCTGGTGCAGCACCGAGCACGGCAACAAGCGCCTGGACGGGGCCTTCCGCAGCCTCAACGGCAAAGGACCCGTTTACCTGCTGTTCAGCGTCAACGGCAGCGGCCACTTCTGCGGCGTGGCCGAGATGCGCTCGTCCGTGGACTACGGCACCAGTGCCGGCGTGTGGGCACAGGACAAGTGGAAGGGCAAGTTTGACGTGGACTGGCTGTTTGTTAAGGACGTGCCCAACAGCCAGCTGCGCCACATCCGCCTTGAGAACAACGACAACAAGCCGGTGACCAACTCCCGGGACACTCAGGAGGTCCCTCTGGAGAAGGCCAAGCAGGTGATGAAGATCATTGTGGGCTTCAAGCACACCACCTCCATCTTCGACGACTTCTCCCACTATGAGAAgaggcaggaggaagaggaggagACCTTTGAGCCACCTGCACCCATCCAGAACCGTTCTCGGCTGGAGCAGGAGCGCCAAAACAGGAGTAAACAGCAGTAGAAGACATTTATTCTTGGCTTGATCAACAGTTACACTAGGACATTCGATTTAAGAGACAGAAGAATTcagaaattatatttaaaaaagaaaaataagtattctttttttttctatttaATCCTGGTGAATTTCTGCCGCCACCGTGGAGACTTGCGCTTTCCGGCCCCAGGTACCACCCATCACCTCTTGTGCAGGGATAACAAGCTGAGTTCATGTATTACCTAGCCACCACCATCACATTGTTTTAGTTCTGATTGACTTTGTTTTTTTACGTTCTATCCCATGTACTCTTTCTCGTCAGACTGGATTTGTTTTTGACCTCTCCTGGCCCCTCCCTAATAACTCTTCCTGGATTTGTTTTTGACCTCTCCTGGCCCCTCCCTAATAACTCTTCCTGGATTTGTTTTTGACCTCTCCTGGCCCCTCCCTAATAACTCTTCCTCGAATTGAATCAGGGTTTGACAGCACCAAGGAGAAGAGAGAATATCTGCCACTTTATATTTCTGTACAATCAGGAACTGCCGTGTCCTGCCCCTGTTTGTCCATTGGGGGGCGGTGTTGCCATCTTTCAGAGGTTTAACTGTGCCAACAGGGTTGGAGGATCCCAAAGGCAAAAAATGTTCGGACTTAGAACTGTGTGTGATAATGAGACTTCAGCGGTTTATCTATTTTTCATTCAAGATCAACAAAGTCTATATTTTATGGCTTACTACTGACAATTTTCAGTTCAGAAAGATGATTTTTCTGGAGCCTTAATATTTTGTTTTCTAGTTATTGATGACTTGTCAAAAGAATCTTTAACTGACAGTGCTGGAGAAATCAGGGATAGTCTGAAGTCAGACTTGGGACATTTCAAAGGAGGAAGTGTGCCTCTGGGAAGGAAGTAACTGATGGGTGTCCTCCACGACGATGGAGCTCTCACCATCTGAATTGAAAATTATACTATTTTACATCCCGAACACCCTTCCACTTTGTTTTGATAAATGACATTTGTCTTGAAGAAGTTGTGTCATTATCAGGAGATTATGTTCACGTACTCAAGCCAGTCTGAGAGAAATGTAGCATTCACCATTTTAAATGAATTATTTTATAGTTGGAATGATGTGCTGTAACTGCTACATATGAATGAATTGTTTCTCTATTTGGAAAAATCACTTGGGTTAATTATCCGTTCATCATAATTCTGTCTTAATCTGTTGTTTTGTTTGACTTGCttctcaaaatgtgtttttttctgtaAATCTCATGTTCTTGTTAATGCTAAGATTTAACTTAGGAGCCTGTAGTCATGGAGATGACCTGAAATGAGCAACTGATTTACTATCAAGAGTAAGAAAACAAATAAGAACTAAATATGCTTTCTGTGTTTTTTGTTGGTcaaagtcattgaaaataagtcaGTGGTATCAGGAATTATCTATCCATCAAGATTGATTGGTGGTTGAACATTGAATGATAAACAATTATCCCAATTATCCCTAATTAATAGCCCACAATGTGCAATCATGCAGGCTGCAATCACAGTCTGGTAACCTTGATTACATTGTGGTTAAACACTATACAGCCCTTTTTGAGTAATGGTTGGCACAACGATTTCTTTCTAGTACAGTTCCTTTATTGACAGTACAGCAGTATTTCCTTTGTTCTCTTACTGATCTCAGACATGCTGGATTCCCATTCTGCACAGAGAGACGGGGTAGAAACTGTTCTGTGTGCCATTCAGTCCACTCTCTTGTGTTGTAGGTTTATTCTGACTTGAGCATTAAACCTGGAATTCTGTGACATcacagtgtgtgtgagcaagagagagacatggatgtGAATGCTGTCCCTCACTGTTACTGCACATCAgtggaggagctataggaggacgggctcattgtagtgGCTGGAATTAAATAACTGGAACGGAGTCCAACGTGGTTTCAATATGTTTGATATCGTtctattgattccattccagccattacaatgagcccgtcctcctatagctccttccaccagcctccactgctgtacaTGAGTGTGAACCCGCATCTCTTGTGTTCATGGAGTTGTAACAGCGTTGTTTCTTGCCATGTGCCTGGATCAGTTCCAGATTTGCTGGATGTTTGTGTATCACCACAGCCCAGTCTCAGATGTTGCGTAGCTGCTCTTTTCCCTGGCCGGTGTAGTGTAGCCCCTGTATGTCTGGAGACATGACCTTTGACTTCGTACAGGGGACGTccgggtgcatctcaatagtctaaagtggcttccttcctctcctccatctgcaGCAATGTGAAAACGTGGTTAAAGCCATATGGGGTGGATGATTTCTATGGTGTTTTCTTCCACAAATTGTCTTTCACACCAGTatagatgaaggaaaggagacaagtgGAGGAAGCCACTTTAGATTATAGACATTGCTGTTTTTCTTTCGGTCAAGAAGCATGAAATGGATGTGATGCCTATAGTTCAGGACTTACATGCACGTGTCGAGTTGTTTGCTGCAATAGAGGGCCATGTGTATGGTTCTAAAATAAAGGATATGTCTACTACACTAAAGGAATAATGacgtgaaataaaacaaatattaataCAATGAATTATTGTATAGACTTGCAAGTAAACCACTTTAGCTATATCAGTGGGATCAACCTGTAAGGTTTTGAAAGCTCTATCTTGGTTTATTATATTTTTTCCTTTAGAAAAAATCAAGCCTTAATAAACTGTATATTTAGCAACAA

Function

GO: NA

KEGG:

id description
K20102 YTHDF; YTH domain-containing family protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1596634 lncRNA downstream 1016 61773202 ~ 61778102 (-) True G1398120
TU1596635 lncRNA downstream 1100 61773041 ~ 61778018 (-) False G1398120
TU1596629 lncRNA downstream 15881 61762525 ~ 61763237 (-) True G1398118
TU1596627 lncRNA downstream 21228 61755971 ~ 61757890 (-) True G1398116
TU1596621 lncRNA downstream 35089 61743828 ~ 61744029 (-) True G1398110
TU1596641 lncRNA upstream 2603 61799318 ~ 61799737 (-) True G1398126
TU1596648 lncRNA upstream 11682 61808397 ~ 61812453 (-) False G1398132
TU1596649 lncRNA upstream 11682 61808397 ~ 61812453 (-) True G1398132
TU1596650 lncRNA upstream 17169 61813884 ~ 61814480 (-) False G1398133
TU1596651 lncRNA upstream 17501 61814216 ~ 61814480 (-) True G1398133
XM_021566892.2 mRNA downstream 90039 61687247 ~ 61689079 (-) True LOC110492507
XM_021566895.2 mRNA downstream 177695 61595093 ~ 61601423 (-) True LOC110492509
XM_021566896.2 mRNA downstream 182406 61595093 ~ 61596712 (-) False LOC110492509
XM_036947505.1 mRNA downstream 184297 61558700 ~ 61594821 (-) True dnah12
XM_021566871.2 mRNA downstream 220696 61552330 ~ 61558422 (-) True asb14b
XM_021566897.2 mRNA upstream 17829 61814544 ~ 61941054 (-) False LOC110492510
XM_036947507.1 mRNA upstream 17829 61814544 ~ 61941054 (-) False LOC110492510
XM_036947509.1 mRNA upstream 17829 61814544 ~ 61943821 (-) False LOC110492510
XM_036947508.1 mRNA upstream 19840 61816555 ~ 61941055 (-) True LOC110492510
XM_036947514.1 mRNA upstream 384514 62181229 ~ 62311172 (-) False LOC110529871
TU1594840 other downstream 1024247 60753105 ~ 60754871 (-) True abhd6b
TU1594806 other downstream 1085082 60693609 ~ 60694036 (-) True G1396543
TU1594786 other downstream 1115602 60661556 ~ 60663516 (-) False LOC118939463
TU1594716 other downstream 1197083 60554756 ~ 60582035 (-) False G1396467
TU1597246 other upstream 938028 62734743 ~ 62735569 (-) True G1398619
TU1597892 other upstream 1402404 63199119 ~ 63292201 (-) True G1399235
TU1598025 other upstream 1588134 63384849 ~ 63385262 (-) True G1399367
TU1599309 other upstream 2306655 64103370 ~ 64105039 (-) True G1400503
TU1599365 other upstream 2460211 64256926 ~ 64257433 (-) True G1400552

Expression Profile