RNA id: XM_036947508.1



Basic Information


Item Value
RNA id XM_036947508.1
length 879
RNA type mRNA
GC content 0.52
exon number 6
gene id LOC110492510
representative True

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 61814544 ~ 61943821 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTgccccgctacacacacacactcgagtGCTAGCGGTAGTAGGCTATCAACTCAAGTTACCCCTCTCACACACAAAGCGATCATTTTGGGGAAAGAAAATGCATGGGACGCCAGTGCCTGGAGCTTACAGACACAGTTTTCACCGTTGACCGAGCTTGAAGCCATTCTTTGCACTGAAAGGTCCTTGCCATAGTGAACCAGTCTAGACCGTTGTGTGTGTTTTCATCGTTTCTCGAGTGCTATTTGGGTTTTAATACAATGGGGTGCTGCAGCGGCCGTTGCACGCTCATCTTTCTTTGCACGATCCAGCTGttggTGGCATTGGAGAGACAGGTGTTTGACTTCCTGGGGTACCAGTGGGCGCCCATCCTGGCCAACTTCTTCcacatcatcatcgtcatcctcGGCCTCTTCGGCACCATACAATACCGACCACGCTACATTGTAGTGTACACAGTGTGGATGGCTCTCTGGGTGGCCTGGAATGTCTTCATCATTTGTTACTACCTGGATGTGGGAGACTTGACCAAGGACAGTGACCTGCTGACGTTTAACATCTCGGCTCACCACTCGTGGTGGAGTGAACACGGTCCagggtgtgtgaggagagagatgaCCCAGCCAGGGGTGGGCACCGTGGACAGCCAGTCCTACATCTCTGTCATGGGCTGTCTCATGGAGTACCAGTACATAGAGGTCCTACACAGTGGAACACAGATCCTCATTGCTCTCCTGGGCTTCGTGTACGCCTGTTACGTCGTCAGCGCCATCACTGAAGAGGAAGACAGCTTTGATTTTGTTGGTGGATTTGACCCCTTCCCCCTCTACCATGTCAATGAGAAACCATCCCATCTCCTCTTAAAGCCCATGTAtctgtaa

Function


GO: NA

KEGG:

id description
K22735 NKAIN; sodium/potassium-transporting ATPase subunit beta-1-interacting protein

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1596650 lncRNA downstream 2075 61813884 ~ 61814480 (-) False G1398133
TU1596651 lncRNA downstream 2075 61814216 ~ 61814480 (-) True G1398133
TU1596648 lncRNA downstream 4102 61808397 ~ 61812453 (-) False G1398132
TU1596649 lncRNA downstream 4102 61808397 ~ 61812453 (-) True G1398132
TU1596641 lncRNA downstream 16818 61799318 ~ 61799737 (-) True G1398126
TU1596749 lncRNA upstream 40623 61981678 ~ 61981894 (-) True G1398231
TU1596761 lncRNA upstream 60956 62002011 ~ 62002243 (-) True G1398243
TU1596768 lncRNA upstream 69414 62010469 ~ 62010714 (-) True G1398250
TU1596773 lncRNA upstream 75106 62016161 ~ 62017667 (-) True G1398255
TU1596763 lncRNA upstream 106423 62047478 ~ 62048246 (-) True G1398245
XM_021566868.2 mRNA downstream 19840 61779118 ~ 61796715 (-) True LOC110492496
XM_021566866.2 mRNA downstream 19848 61779118 ~ 61796707 (-) False LOC110492496
XM_021566869.2 mRNA downstream 19849 61779118 ~ 61796706 (-) False LOC110492496
XM_021566892.2 mRNA downstream 127476 61687247 ~ 61689079 (-) True LOC110492507
XM_021566895.2 mRNA downstream 215132 61595093 ~ 61601423 (-) True LOC110492509
XM_036947514.1 mRNA upstream 240174 62181229 ~ 62311172 (-) False LOC110529871
XM_036947515.1 mRNA upstream 243106 62184161 ~ 62311178 (-) False LOC110529871
XM_036947513.1 mRNA upstream 253550 62194605 ~ 62311208 (-) False LOC110529871
XM_036947518.1 mRNA upstream 387733 62328788 ~ 62366778 (-) False uckl1b
XM_036947523.1 mRNA upstream 387733 62328788 ~ 62375435 (-) False uckl1b
TU1594840 other downstream 1061684 60753105 ~ 60754871 (-) True abhd6b
TU1594806 other downstream 1122519 60693609 ~ 60694036 (-) True G1396543
TU1594786 other downstream 1153039 60661556 ~ 60663516 (-) False LOC118939463
TU1594716 other downstream 1234520 60554756 ~ 60582035 (-) False G1396467
TU1597246 other upstream 793688 62734743 ~ 62735569 (-) True G1398619
TU1597892 other upstream 1258064 63199119 ~ 63292201 (-) True G1399235
TU1598025 other upstream 1443794 63384849 ~ 63385262 (-) True G1399367
TU1599309 other upstream 2162315 64103370 ~ 64105039 (-) True G1400503
TU1599365 other upstream 2315871 64256926 ~ 64257433 (-) True G1400552

Expression Profile