RNA id: TU1596864


Basic Information

Item Value
RNA id TU1596864
length 4500
lncRNA type sense_over
GC content 0.44
exon number 3
gene id LOC110529871
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 62181229 ~ 62311208 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acacacacacaaagacattatACCCATGTCGATGAATGACCTGTGGTCTCATTGCACTGAAGAGGATCACATCCTCCCTAAACCGGTATCTCTCTTCCCATTGGATGAGAGTAGATCTGAGTGGGCCCAATTGGGGTTATATGTAAGAGCACTTATATATTTTCTACAACCGGTGTAATTTATAAGATTAAAGAGTGATCTTTCATAAAAAGTTTGGTTTTTACATACActacatcaccaaaagtatgtggacacctgcttgtcaaacatctcattccaaaatcatgggcattaatatggagttggtcccccctttgctgctataacagcctttacttttctgggaagtcttttaactagattttggaacattactgtggggacttgcttccattcagccactagagcattagtgagttcgggcactgatgttggacgattaggcctggctcgcagtcagcattccaattcatcccaaaggtgttcgatagagttgaggtcagggctctgtgcaggccagtcaaggtcTTCCATGGCGATCTCAACAagacatttctgtatggacctctctttgtgcacaggggtattgtcatgctgaaacaggaaagggccttccccaaactgttgcaacaaagttggatacacataatcgtctagaatgtcattgtctgttgtagcattaagatttcccttcactggaactaaggggtctagcctgaaccatggaaaacagccccagaccattattcctcctccactaaactttacagttggcgctaGGCATTCAGGAaggtaacgttctcctggcattcgttAAACCCAGATGTGtccttcggactgccagatggtgaagcttgattcatcactccagagaatgtgtctactgctccagagtctaatggcggcgagctttacaccactccagccaacgcttggcattgcacatggtgatcttaggtttgtgtgtggctgctcggccatggaaacccatttcacgaagcttccgacgaacagttattgtgcttccaaaggcagtttggaactcggtagtgagtgttgcaaccgaggacagaccatttttgcgcactcttcagcactcggcggtcctgttctgtcagcttgtgtggcctaccacatggtggctgagccgttgttgttcctagacatttccacttcactataacagcacttacagttgaccggggcagcagggcagaaatttgatgaaccgacttgttggaaaggtggcatcctatgacggtgccgcTTAGAAAGTCACTGAgcccttcagtaaggccattctactgacaatgtttgtctgtggagattacatggctgtgtgctcctgTCAGcgacaggtgtggctgaaatagccgaatccaataatttgaaggggtgtccacatacttttgtaaatacTGTACAGTGAATGTAGGCGGCGGCCTATATTTTGAAGAAGCCTTTAGGCATCTTTTTAAAAACCACAATTGCTATGCAAAGTGACCAGTGAAAATGTACTGTAACGGCTCACCTGAGTTCCAGCTTTGTTTTATTATGTATCaatatgtgtttgtttgtctgtctgtttgtcattCTGTACAGCTGTCACTTGCTTATGGAGTGCATTGATCGAATGATCAGGGGTGCTCATATCACATTGTTGGTGCTGTTGTTGGAAATAGCTCTGGGTAGAATCAGGTCTAGAATCAGCTTACCTTTGTTAAATCCTCATCGTAACCATCAGGGGGAAAGCACAAAACTGACCTTAGAGTGTATAGCGAAACCTTTTTTCTTCTACTTGGGTTCTTGTGGTGTTTATTCTATTCCCTAGCCGCCGGTCTCCCTCTGTGTCGCCAGCTGAAGCTCTCTTCTCCATATTAGGAAGGGAGATTTGGATCTCCTACTCTTTACATACCACTAAAACTGCTCATAAACTGACCTCTAGTCACCACACATCAGCACCACCTGCAGGTAATCATATGTACTACACATTCCCTGTCAGCGTTGATTCTGTACACTAACATCAGAGGTCTGTTCTGGGAGCGGAGTGCCCTAACCCTATACAGTCTGAAACAATGCTACAATAATCTGTTTTTAACCTTCAAATCAGGAagtgtcatcatcatcatcatcagatgTAAAAACAGAGGTCCGTCATACATTCAGAGCAGGCCTACAATAAGTTCACATGTGACACATACAACAGCCCTGAGAGGGTAACGTTCACGCAAATGGTTTTGCACTGAATTATGCCTAGTTGGATTTGAGGAAAGgttttgatctatatttctgcacACGGAGTTCCTCTCCTTTATCTGTTTTGATAAAGCTTTTtgggcttccgagtggcgcagcggtctaaggccctgcatctcagtgctagaggcatcactacagaccctggtttgattctaggctgtatcacaactggccgagatcatggagtcccatagggcggcgcagagttgctaggggagggtttggccgaggtaggccggGTTAAAGGAGTGTTTGGCCGAGcgtcgtccgggttaaaggagggtttggccgaggtaggccttcattgtaaataagaatttgttcttaactgacttgccaaggtaaattaaggttaaataaatgatATGCAGGAAGTTGACTGGTGAACACAGGTGTCTGTGAAGGGCATTTGACATGTTTTCCTACATCCGTCCTGTGTTGTTTTTAGATCAGTGGAGATGAAAAGAGTACCAAGCCACTTAAAACAATACAGACATGCTTGCGGGCGGGTTAGGGTGGGGTTAGAGTTGTTTCAAGTTCCTTTCTCTCTGTGCGCTGACCCAAATCCTCCTAACCCCCTCTATAAGCCCAGCTGATGGAGAATAGTAATTGGCTCTTCTCAGCTCCAGCCCTCACTGACCTATGACCCCTCCTTGGGACGACCCCTCCTTGGGTcaatgttggggcggcaggtagcctagtggttaggatgttggactagtaaccgaaaggttgcaagatcaaatccctgagctgacaaggtaaacatctgtcgttctgcccctgaacaggcagttaacccgctgttcctaggccgtcattgaaaataagaatttgttcttaactgacctgcctagttaaataaaggtaaagggTAGGGACATCTCAAGGATCCCAGATAACACTAACATAAGAGGAAGTGGGCAGAGGAGGGCCATGACTTCTCTGTCGTCATAGGAACAAGTGGAAAGagagagagacagtgacagcgagaagatgggggagggagatagGAGGTTAGATGGTGTTGTCTGAGAGGTTCAGAGTGTCCATTGTAACATAGTCACAGTCTGTGGTTGATATACTGTTTGAATTAGTGTAGGGCTACAGACAGGGAGTAATGGTTGTGGATGGCAGGGTGGGACTAGGAACTAGGACAAACATATCACTTACTGTATCTTAAATGGAATTCCTTATAGACTGTTTGTCTTCCTCCTGCTTGTTACTGCATGAAAACAAGGTGCGTTGAATGCGTTTTGCATGTATAATTTGGTCATTGGATTGATGCTATTTCAGTAACTGAATTATAGAACcacaaagctctctctctctttctttctctggcGGTCCTTAAGGATACACTTGTCACAGTGTTTGAGTGGTCTGACTAAAATGCTGTCTTGCCACAAACGTTATTCTCTGAGAGCTAGGACTCCTAAaataggaattagaatactagaatacCTCCACTTCCTCATTCTGAGGTAAAAAGCGTATTTTTCTGTCTGTTTGATGTGACTGTAGTACAGTTGCATAGGGAAGTTAGCTGTAAAGTCCTAATTTTCTGGAAGTGCATCAACCAAttaaccaatcaaccaaccacTCATTCAATCAAATTTGGATTTATACAGCACTTTTTACAAATGCAGCTGACCCAAAGAGAAAGCCGGGTGTCAAACCACAAAGATCAATGACAATCTAAAGCTGTGTTTGTCAGTCTAGGTCAATGTGTGTCCTGTCTGTGCCCATACCCTTCCATGGAACCTTATACAGATCCTATTCAATGATCaaagtattctaattcctaattctatgccTCAACCATTATGACTGGGGGGTCATTTGAGACGTGTCCCTTATGTCGTTTTGGTGTTTTCCACATAACCAGGTATGAGAACAGACCAACATGTTAAGTGGAACTTGTCATCTTGTTTAAGGAACTTGTCCCTGAGCTGGTCTCAGAGAGAATGAATGTTCTGGCCTATGGTCAAACAGGAAAGCAGGCTAGGCTTCTCTCATGTGAACCAGACTGGTTAGgagccatttttaaaaagagccAATGAGGTGGATTTCGGTTGCAATATTGGGATTTTCTTTAGTAAATTCTTAGAGCAAAAATACAATGCATTTTAGACTGTATTTTTTGTCTTTTAATTCCAAATATCAAAGATCGATATGTATTTGTGTAATGTTTCTAGGGTAGTTTGTATTCTGTAATCAATAAACTGTGAACGAAAACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1596867 lncRNA downstream 12520 62173164 ~ 62177424 (-) False G1398341
TU1596868 lncRNA downstream 12520 62173164 ~ 62177424 (-) True G1398341
TU1596889 lncRNA downstream 29810 62159830 ~ 62160134 (-) True G1398361
TU1596797 lncRNA downstream 131341 62057903 ~ 62058603 (-) True G1398279
TU1596763 lncRNA downstream 141698 62047478 ~ 62048246 (-) True G1398245
TU1596900 lncRNA upstream 16446 62211385 ~ 62211971 (-) True G1398372
TU1596906 lncRNA upstream 24570 62219509 ~ 62220378 (-) True G1398378
TU1596924 lncRNA upstream 58857 62253796 ~ 62254800 (-) True G1398395
TU1596928 lncRNA upstream 61527 62256466 ~ 62260463 (-) True G1398399
TU1596962 lncRNA upstream 98041 62292980 ~ 62293281 (-) True G1398420
XM_036947509.1 mRNA downstream 246123 61814544 ~ 61943821 (-) False LOC110492510
XM_036947508.1 mRNA downstream 248889 61816555 ~ 61941055 (-) True LOC110492510
XM_021566897.2 mRNA downstream 248890 61814544 ~ 61941054 (-) False LOC110492510
XM_036947507.1 mRNA downstream 248890 61814544 ~ 61941054 (-) False LOC110492510
XM_021566868.2 mRNA downstream 393229 61779118 ~ 61796715 (-) True LOC110492496
XM_036947518.1 mRNA upstream 133849 62328788 ~ 62366778 (-) False uckl1b
XM_036947523.1 mRNA upstream 133849 62328788 ~ 62375435 (-) False uckl1b
XM_036947516.1 mRNA upstream 133849 62328788 ~ 62375436 (-) False uckl1b
XM_036947519.1 mRNA upstream 133849 62328788 ~ 62375436 (-) False uckl1b
XM_036947522.1 mRNA upstream 133849 62328788 ~ 62375436 (-) False uckl1b
TU1594840 other downstream 1435073 60753105 ~ 60754871 (-) True abhd6b
TU1594806 other downstream 1495908 60693609 ~ 60694036 (-) True G1396543
TU1594786 other downstream 1526428 60661556 ~ 60663516 (-) False LOC118939463
TU1594716 other downstream 1607909 60554756 ~ 60582035 (-) False G1396467
TU1597246 other upstream 539804 62734743 ~ 62735569 (-) True G1398619
TU1597892 other upstream 1004180 63199119 ~ 63292201 (-) True G1399235
TU1598025 other upstream 1189910 63384849 ~ 63385262 (-) True G1399367
TU1599309 other upstream 1908431 64103370 ~ 64105039 (-) True G1400503
TU1599365 other upstream 2061987 64256926 ~ 64257433 (-) True G1400552

Expression Profile