RNA id: XM_036947516.1


Basic Information

Item Value
RNA id XM_036947516.1
length 3408
RNA type mRNA
GC content 0.47
exon number 15
gene id uckl1b
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 62328788 ~ 62386980 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggaaagcaGGCTATGCTGCAGATTCTTTCCTATTGCGCTCTTTATCTACAATGTCCTCTCTCTGCCGCTCGGAGTGAATAGAAAGCAAAACAGATGTTTGAAGCATAGTTTCGTTTCTCCCCCAActgtctccatctttctctctttcctttctttttcgctctcctgttctctctgttgtgGACTTGCCTAGCCAGAGGGGCAGTAGGACTAAGTGCCTCCTGTGCACTTGTGTATCAGTAGCTGATGTCAACCTCACTGACAATAACAAGAACTGAAACACTAGTTAACATCTCATAGACAAACCCTTGTTCGCCTATCATCTCGTTTCATCATGAATACTTTGAATACAGGAGCTCGGATATCAGGCTGCTGGACTGTAACAGGCTGCAGCGGGGGCGGAGAGGGCTCCCTGGACAGACTCCTCACCTCCGTCAGCTCTGGGCTGTCACCGAGGAAACGGACTACCAGCCAGTGCAAGTCAGAACCGCCCCTGCTGCGGACATCCAAGCGGACAATCTACACAGCCGGCCGCCCACCCTGGTATAACGAACATGGAACCCAGTCCAAAGAGGCCTTCGTCATCGGTCTGTGTGGGGGCAGTGCCTCAGGGAAGACCACTGTAGCCAGGAAGATCATAGAGGCTCTGGATGTCCCCTGGGTGGTCCTGCTCTCCATGGACTCCTtctacaagGTTCTGACTCCTGAGCAGCAGGTCACGGCAGCCAGTAATGACTACAACTTTGACCACCCGGATGCCTTTGACTTTGGCCTGCTGGCACACACACTGAGGAAACTCAAACTGGGCAAGAGTGTAAAGATCCCTGTGTATGACTTCACCACACACGGACGCCAGAAGGACtggAAAACAGTGTATGGAGCCAGTGTTATCATTTTTGAGGGAATCATGGCCTTTGCAGATAAAGAACTGTTACAGCTGCTGGACATGAAGATCTTTGTGGAGACTGACTCAGACATCCGTCTGGTGCGTCGGCTGCAGAGGGACATCACAGAGCGTGGCCGGGACATCGATGGAGTCATCAAACAGTACAATAAGTTTGTGAAGCCCGCCTTTGAGCAGTACATCGAGCCAACCATGCGACTGGCTGACATTGTGGTACCACGCGGAGGAGGCAACATGGTGGCCATAGACTTGATCGTACAGCACGTCCACAGCCAGCTGGAGGAGAGGAAACTGCGCTGGGATATGGCGGCCCTTGCCTCTGCCCACCAGGCCCAGCCCCTCCCCCAGACCCTGAGTGTTCTGGAGAGTACACCCCAGGTCAGGGGAATGCACACCATAATAAGAAACAAAGAGACAAGCAGGGATGAGTTCATCTTCTACTCGAAGAGACTGATGCGTCTGCTGATTGAACGAGCGCTTTCCTTTCTTCCCTCAGAGAGCCATATAGTTCAAACACCGCAGGGAGAGGACTATGAAGGCAGGACTTTCCACGGGAAGAGGATCACTGGAGTGTCCATCCTGCGAGCAGGAGAGACCATGGAGCCAGCTCTCCGGGCGGTGTGTAAAGATGTCCGCATCGGTAAGATCCTGATCCAGACCAACCAGGACACAGGAGAACCAGAGctgcATTATCTGCGTCTGCCTAAGGACATTGGTGAGGACCATGTGATTCTGATGGACTGCACCGTGTCTACTGGGGCTGCTGCCATGATGGCCGTACGAGTCCTACTGGACCATGATGTCCAGGAGGATAAGATCCTGTTGGTGTCTCTGCTGATGGCTGAGATGGGGGTTCACTCTGTGGCCTACGCCTTCCCTCAGGTCCAAATCATCACCACCGCCGTCGACAAGAAGGTCAACGACCTCTTCCACATCATACCCGGCATAGGAAATTTCGGTGACCGGTACTTTGGCACGGACGCACCCCCAGAATGGAGCGATGAGGAGATGGATGAGCCCAGTTACTGATGGGACAATGGGCAGACCCATTTGAATGATTCAGGGGAGCACCGTTTGGAGGATGATTGAGGAATGTGCTTTTTACCCCACTGGGCAGCTACGTACACCCCCTTATTCTGGGGACCAAAGAAGACACCCTGGAGTACTAGAGCACCTTGAATTTCACTGAGATACAGAAAATTAGTCAAAGATTTACAAAGGACAGTTTTTGTATATTTCTATTTGAGTTTTATGCCAATGCTGTTGTGGGACAGTTGTAATAGTAAATGTAGTACTTTTTGTAATGTGAATGTTTGTTTGTAAAATGTTCTATTTTTGGTTGtttgaattatgttttttgagGGTGACCCACATTCAATAAGAGGTAATTGCAAAAcacacttttttatttatttctcagAGCTTAATTATTAACCTTTCAGAATGCAATCCAAAAAATACACAGCCATATTGTTCATTCTCTCTGCTCATAGAAAGTGCCTTCTTTCAAGGAACACTTTACCGGAAAATTGTGTAGGCGTAACTTTAACACTTAGTCCTCTTTTCACAGCAAGGCCTAAATATACTCCCACATCCTGATCTACCTGCTAGTCTACCTGTGAGTGGCTCCTCCAGCAGCTCGGTTAGCCTTGACCGCTTTCATCGCCCTTAAACATCGGCACTTTATTCATGAAGTTTCCTCTGTCTGCGTATGATTCTGGGCCTATGCTGCCTATCATAATGAGGCCTTACAACTGTTGTTGTCATGCTTAATGTTTCCTAGTGACATCGGCGTAGGCTACACCACCTAGACCTACATTTAATTTGTGCTTTGTCTGCAACATAGAgacgagagagacggagaaaatGTACAGGAAGGATATGGTGGTTGTCCTCTTCTCATGGAAACTAACCTTGATATCTTCCATCACTTTCATCACTAACCCACCGCTGACACCAAGAAGGCGGTGGGGTAAATATAGGATGACACTGACTTAAACGGTAGGCTACTGGGCTATTAAACAAAAAAGTTTTACAATATAGAATAGGCCTGCAGTTCTAATGAGCGCTGCCGCGGTGCCCTGGAAAGATGGATCATGGTTGTGAGGACAGTCACCAAGACACctgtctgctgcagaggtaaAACTCTCACGCCAGGGTTGCAAGGTAGGGCTGTCTGACATATGGCGCAACATTGTGTAGGTTAATATTATTCCTAGAAGAGATTTAAGAGCTTTATGAAATTCTCTTTATTTCTGATCAGGTTATTACATTTGGGAATTTTAAAGGTTGCATAGGCTAATAATTAGCCTACATCATTCAGTTTTTGGAGGGTTTGAAATGGAATGTGTTTTGAATTTTACTCTACATTTAAATTGATTTATGGAAATTAAATTGAATTTAAGCTTGATCTGAGCTTTTAAAACTTTGTCACATAATGGTTTCATGATTCTGCAGACCACAATCAAATAAACCATATACATACCAGTACTATAGCTGAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1596962 lncRNA downstream 35507 62292980 ~ 62293281 (-) True G1398420
TU1596928 lncRNA downstream 68325 62256466 ~ 62260463 (-) True G1398399
TU1596924 lncRNA downstream 73988 62253796 ~ 62254800 (-) True G1398395
TU1596906 lncRNA downstream 108410 62219509 ~ 62220378 (-) True G1398378
TU1596900 lncRNA downstream 116817 62211385 ~ 62211971 (-) True G1398372
TU1597016 lncRNA upstream 19189 62394625 ~ 62396055 (-) True G1398462
TU1597028 lncRNA upstream 58708 62434144 ~ 62435164 (-) True G1398473
TU1597103 lncRNA upstream 89817 62465253 ~ 62468173 (-) True G1398487
TU1597141 lncRNA upstream 124794 62500230 ~ 62501553 (-) True G1398520
TU1597067 lncRNA upstream 144669 62520105 ~ 62566469 (-) False G1398486
XM_036947513.1 mRNA downstream 17580 62194605 ~ 62311208 (-) False LOC110529871
XM_036947515.1 mRNA downstream 17610 62184161 ~ 62311178 (-) False LOC110529871
XM_036947514.1 mRNA downstream 17616 62181229 ~ 62311172 (-) False LOC110529871
XM_036947509.1 mRNA downstream 384967 61814544 ~ 61943821 (-) False LOC110492510
XM_036947528.1 mRNA upstream 11992 62387428 ~ 62437131 (-) False LOC110492495
XM_036947525.1 mRNA upstream 11992 62387428 ~ 62459484 (-) False LOC110492495
XM_036947526.1 mRNA upstream 11992 62387428 ~ 62459484 (-) False LOC110492495
XM_036947527.1 mRNA upstream 11992 62387428 ~ 62459484 (-) True LOC110492495
XM_036947529.1 mRNA upstream 94514 62469950 ~ 62665506 (-) True LOC118939569
TU1594840 other downstream 1573917 60753105 ~ 60754871 (-) True abhd6b
TU1594806 other downstream 1634752 60693609 ~ 60694036 (-) True G1396543
TU1594786 other downstream 1665272 60661556 ~ 60663516 (-) False LOC118939463
TU1594716 other downstream 1746753 60554756 ~ 60582035 (-) False G1396467
TU1597246 other upstream 359307 62734743 ~ 62735569 (-) True G1398619
TU1597892 other upstream 823683 63199119 ~ 63292201 (-) True G1399235
TU1598025 other upstream 1009413 63384849 ~ 63385262 (-) True G1399367
TU1599309 other upstream 1727934 64103370 ~ 64105039 (-) True G1400503
TU1599365 other upstream 1881490 64256926 ~ 64257433 (-) True G1400552

Expression Profile