RNA id: XM_021566908.2


Basic Information

Item Value
RNA id XM_021566908.2
length 2995
RNA type mRNA
GC content 0.55
exon number 3
gene id LOC110492520
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 63424911 ~ 63429527 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAAAATTCCCAGGCTCGTTGATAACCATGGCCGAGCTCCTCTCCAGAGAGTGCGCTTGCGCAATGAGGTGATGGGAATTTCCAGCAGTAGGACGGACAAGCTTGGAGTTGGTGCAGAAAAGGCCCAGCATCATAATTGTGGCCCTCTCTGCCCAGTGACCCTGAACTCACCTTTTGGTTAAATGACAGGGCAGAGGCTAGACCTCCGGATACTTCTCAGGGCCACCAAACCGTCAACCACCAGCACCCTCTGGCCTCATCTCATTCCCCACATTTTCCCTGGAGAGCCTACATGGACTgccagttaaaaaaaataaccagagATGCCCAAAAGCAGATGGTGGGCCTACAGGCAAGAGCCTAGCCATCCCAATCAGGAAGCAGTTCAATTCAACCCTACTGATCCCCTCTCATCTGAAGCATAGCGACGACTTCCTGATTGAGCTCGGAGGTGCGTTTCTCAACCCTCAGTGGGGTGCATTTGTGTGTCTGTCCCGAGATGTCAACAGAGAGGGGCTGCTGAAAGTGTCGTCCGGGGcatgagagagggagcgaggaaggGGTGTCACGGCTGAAGCAGTCCACTGCTGCACCGCCAATGGATGCCAAACTGCAAGAGGACCTATTCCGGAGGTACGTGGTGTGCCTGGAGAGGCGGCTAGAGGACGGAGGGGGGAATGCGGGCCTTGGCGGAAGCACCTTGGAGGGTGGCAGCGAGGCTCTACTCTCCACGGCCACAGCCCTGCTGGGGGCCTACCAACCAGACCCGGGCCAGAGGTTCCGCATGGTGCGCTTCTATGAGGTGGTGGAGAACGCCATTCGATGCCTGAGAGGCTGCAGTCTGCAGGGCCTGGAGAGAGCCTTCCTCACCCTGGAGACTCTCTGTACCAACCTGCTGCTCTTCCCCTGGAAGAAAGAGTTCCGCTGCATCAAGACCTTCACAGGCCCGTACGTCTACCTTCTCCAGTCTGCTGTGTGCGATGCTGATCTCCGCTCCCTCCTGCGTTCTATGGGCTACTCCCGCGACCATGAGCTCCAGTTCCACGTCCGGGACCACCCAGGTGGCCCAGCCCACCTCCGGCAGCTAGCCTTCGAGCTCTTCCTGGCCCAGGCCGAGTGTCGTCTCCTGGGGGAGGTGGTGGCTTTGGCCCGGGGTTCAGCCTCTGAGCTGGAAGCCCTGGAGCAACGGAGGGGCTGCCGGGATGACGCGGCCGGCTGTGCAGAGGTCCTCCGACGGCGAGATAGCCTTGGGGCCGACATGGCCAGGCTCTCAGTGCGACCGATGGACATACCTCACCCTCACCATctaaggagagggggaagaccgTCCAAGTCGGTGGATGTTACGGATGGAGCTGGGAATTGGCACGCAGCCTCTAAGCCTGTTCTGAAAGCCTCTCTGAGCCTGAGGAAGGAGCCTCTGTTTGTGGATGCAGAGGAGGACATGAAGGATGAGATTATCAGGCCCAGCACCTCCACTTCCATGTTCTCTGTGACTGACCCACCTTCCTACAGCCCCGTGCCTGACTTCTTCCCTATTCAATCCCTGCCCTCGGTCGACGCTTActcctcctaccacctctcctcATTGGATGAAATTGATCTGTACACAGAGAGGGGTGGGCCTAGGGTTGGAGGTCGACAGACACCTTCCAGACCTCCATCCAGGGAGCCCCGGGATGCCAGGGATGGCTGGGCACTCAAAACCCACAGTGGACTCACCTCTCCGGGGGTGAAGTGTCAGGGTTGTGGCCTGGGCTGCTCCAGCCTGGCATCCTGCCCCAGGTGTGAAATGATCCTGTGCCAGGCCTGTCACGACATCGACCCCTCCCCATGCTGCGGCCTGCAGGACTACCCCAACCCCAAATCGCCCCGCCCCGTGGATGGTTACCTCCCCGTCAAGGAGAAGCTGTCAGTCTACTCCAACACCCACTCCCCACACCCCCACATACACCCTCACCCCCTCACTCCCCCTCACCCCCAGATGGTGGAGAAACCCCTCATGGCCACTAAGCTGTTTCCCTGCAAGTCGGTTGCCATGTCGTCGGCCATGGTAGCCAATAGCGACCGAGCAAGCCTGGGGGGGTCACGGTGCGGGTTCTGTAACAAGCCGGGTGCTTCGCACACCTGCGTGAACTGCTCCAAGGTGTCATGTGACATGTGCATGAGCCTGTACGCTAAAGATGTGTGCACGCGTAAAAAACCCCAGCATAGCTTTGTCCCCAACCACCAGCTCAACTTTAAGTCTGGAACCATATCACATCTGGTCTACCGATGAGCCAGGAACAACAGGGAGTGGACTCTCACTATTCAAACCTCTCTCGTTTCTATTTCCCTCTCTTACCTGTTCCTGTTTTCTCTTCCTCCTTATTACTTTCTCACCCTTCCCTTGaactctcttcccttctctatcAGATGTATGGCTCTGGAATAAACACAGGACACATCATAGGGAGTCGTatctcctgcctctctctgccttgtAAAAGATCAGGCTTTTTTTTCAACTGCTTCCTCTTCTTCCTTACCCTGCTCTAGCTTAGTCATGTGATGTCGTAGCGCTTCCTAACCCCTCAAATCTAGTCCTCTCCAAGCGAAACGGGAGAAAAAAGCAAGAGTCATCCGGCTTgtagaaaaacaaaacacaaatgcTGACTAAACTTCTCAGCCGAGGAGACTGCCCGGTAGATGTGTCATAGTCTTCTGGAATTGGATTATGTTCACTGAGGACCCTTTTTAAACTTGAAAAACCAAGGGGGGGGAAACAACAACCGTAAATGTACACTGGAATTCAATAGTATATATTTTCAATGGTTATTCATTCTGTAGATCAATGTAAGACTGTTGGGTGGGGATGCGTCTGGGGTGAATGTTTTGTGGGGATGCTTTAAAGGGATATTTTGAGAGACAATGGTCGGATGCCATAATAGTCTATTTAAAGAACAATGCCTTGTACATTTACCCTCAAATGTTTAAAGTGTATAGCTAAGGTTTA

Function

GO: NA

KEGG:

id description
K17595 SPATA2; spermatogenesis-associated protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1598057 lncRNA downstream 2065 63420350 ~ 63422846 (-) True G1399398
TU1598039 lncRNA downstream 27580 63397103 ~ 63397331 (-) True G1399381
TU1598034 lncRNA downstream 30570 63394102 ~ 63394341 (-) True G1399376
TU1598028 lncRNA downstream 36592 63387923 ~ 63388319 (-) True G1399370
TU1598014 lncRNA downstream 53307 63371370 ~ 63371604 (-) True G1399356
TU1598061 lncRNA upstream 4828 63434355 ~ 63434599 (-) True G1399402
TU1598063 lncRNA upstream 7666 63437193 ~ 63437484 (-) True G1399404
TU1598076 lncRNA upstream 15321 63444848 ~ 63446821 (-) True G1399408
TU1598078 lncRNA upstream 17532 63447059 ~ 63447321 (-) True G1399410
TU1598081 lncRNA upstream 23394 63452921 ~ 63453274 (-) True G1399413
XM_036947533.1 mRNA downstream 416412 62959965 ~ 63008499 (-) True b4galt5
XM_036947534.1 mRNA downstream 433932 62959965 ~ 62990979 (-) False b4galt5
XM_036947529.1 mRNA downstream 759405 62469950 ~ 62665506 (-) True LOC118939569
XM_036947526.1 mRNA downstream 965427 62387428 ~ 62459484 (-) False LOC110492495
XM_036947536.1 mRNA upstream 634723 64064250 ~ 64081609 (-) True LOC110492523
LOC118939600 mRNA upstream 636659 64066186 ~ 64066289 (-) True LOC118939600
XM_021566915.2 mRNA upstream 658657 64088184 ~ 64092123 (-) True rab5if
XM_036947537.1 mRNA upstream 678468 64107995 ~ 64145663 (-) False plcg1
XM_036947538.1 mRNA upstream 678468 64107995 ~ 64145664 (-) False plcg1
TU1598025 other downstream 39649 63384849 ~ 63385262 (-) True G1399367
TU1597892 other downstream 132710 63199119 ~ 63292201 (-) True G1399235
TU1597246 other downstream 689342 62734743 ~ 62735569 (-) True G1398619
TU1594840 other downstream 2670040 60753105 ~ 60754871 (-) True abhd6b
TU1594806 other downstream 2730875 60693609 ~ 60694036 (-) True G1396543
TU1599309 other upstream 673843 64103370 ~ 64105039 (-) True G1400503
TU1599365 other upstream 827399 64256926 ~ 64257433 (-) True G1400552
TU1599377 other upstream 854680 64284207 ~ 64284547 (-) True G1400564
TU1599378 other upstream 856101 64285628 ~ 64285993 (-) True G1400565
TU1599394 other upstream 880356 64309883 ~ 64310456 (-) True G1400578

Expression Profile