RNA id: XM_021566915.2


Basic Information

Item Value
RNA id XM_021566915.2
length 2121
RNA type mRNA
GC content 0.40
exon number 4
gene id rab5if
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 64088184 ~ 64092123 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTTTCTTATTGGCTCTTACCGACAGGCTAATTTCGGGTCAAGTCCTTCCTGCGCATGAAGTCTGTTGGGTCAGCAGTGCGGTGGTTCCTTTAGCCCTTTGTAAACATTTGACAATAATAATCGATTGAAATAGACGACGGAAACCGTATAATAATAACATTATTGTAAGGTGTGTTGCACGCGGAGCTTAATTTAACGTCTGCAGAGCAAGGGGGTAACAGCAGAGAATGACGAACGGTTCAAAGAGAAAAGAAGAAGTTCATCTCGCCAATGGGGGTGTAAAGCAGTCCACATGGAGCAAAGTCTTAAATAGTACCGCTGTATGGGAAGAGAAGGATGAGTTTTTAGATGTGATCTACTGGATTCGACAGATTATTGCTCTCATCCTTGGCGTGATATGGGGTGTTGCACCACTAAAAGGCTTCCTAGGAATAGCCATATTCTGTGTCATCAACGCGGGGGTCCTGTATGTGTACTTCAGCAGCTTTCAGCAGGTGGACGAGGAGGAATATGGAGGAACGTGGGAACTCACCAAAGAAGGCTTCATGACATCCTTTGCATTATTCCTGgTGGTGTGGATAATATTTTACACAGCGCTTCATCATGACTGAAGACCCGAGGGGAATCCAATCCATTTGAGAAAAATATGAACATTTCAGTTGAAGTTAAAATGTCAAGACATGAAGTGTTTAGAAATTGTTTTTAAGACAACTCGGAAACTCCGAACCTCTTGAGTTAAAATGTACATACGTTTTTTTATTTTGCGTAGAGCTTCCTATTGGTTGATTCTGATATTTTCCAAGTGGGGAAGCTgagcaattttttttaaatgagtttCCAAGTCGGAAATGTCAGAGTTTCCGAGTTGCTTTGAAAGCGGCAAAACTCCACCGTTTCTGGTGTGTCACCACCCACACCTAGGACCCGTCTGTATGCAGTGCATTTTGGGAGCCATAGTTTGACATGAATGACCTTGTAAGACCATCAGGTTAACATTAAGTTATGGCTCTGTTTGAATACTTTATTGGTGCATCTCAATCCTTTAACATTGCTTCTTCTCTTCATCTCCTTTCCTTTATCTGAACTGACATGTAAACACAGCGCTGGTGAGGGAATGTGGAGGATGCCATTTAGAAATTTGCTCTCACCTGTCCAGTTATTTCATATCAATGCAGATAAAGGGGATGAGGAAAATAGGTATTTTTTGACTATTGAGATGCAACCTTTCCATCCATCTGTTTTTCTCCTTAACTTTCTAGAGTTGATCACTAATCTGACAAATGGGTTGATGAAAGCAAGTGCTCAGCCAGATTGTTTCCACCTACCCatcccatagagaatgatagaggcctctagtggccaaaaggctgTATTTGCATGGGCGgcaccattgagggcttccaccattttaatgtaatcaactgggtgggacttaacctcattggctgatccctcctggtgactCTGATGGAGTAATGTCCAACTGGGTCATCATAAATTTGACTACTTAAAAATGGAGATTGCCTCAATCGTGCTGCCTTTGCTGTCACAAACGCTATAAttgcacagatacaaagatgagtcctctgtATATCTTTGACCCACACAGCCTAGATCAGTGTAATCTtcatggagagatggaaggaaacCTTAATCTCTGAAGTGTTGGAATTCTGTCCAACTTTTAAGCTAAAACTGTTCTACAGCCATAATCTGTTATTGTTTTTCTTTTCACTTAGTAATGGCAGTATTTGTATCTAGCAGTCAGAACTGGTTTTAATTcaactttttttgtttgttttccctCACACATAGCTTCCAAATCAAATAGTCTTACCTAATGTTCTGAGATTATTAATTTAAAACATCTGTAAATTCTGTAAAATGTTCCCTTTTCTCAATCTGCATTGTATTAAACTGATTTATTTGTACTCCTTTGTTATATCTTGGTTGATGTAACATACATTTCAGTATTTTATAGTTCATTCAATGAATCGTTTGTGCAAGATGTCTGTAATGACTACTGTACCACGTACATGATTGGTTTTTGAGAGTATTGTATTTTCTGATTTGGGAATCACATTAAACAGGGGCTTTGTTTATCATCCAATTTCAAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1598666 lncRNA downstream 40051 64047926 ~ 64048133 (-) True G1399974
TU1598656 lncRNA downstream 54102 64033854 ~ 64034082 (-) True G1399965
TU1598655 lncRNA downstream 54942 64033031 ~ 64033242 (-) True G1399964
TU1598580 lncRNA downstream 233299 63792747 ~ 63854885 (-) True G1399895
TU1599300 lncRNA upstream 3091 64095214 ~ 64095615 (-) True G1400495
TU1599304 lncRNA upstream 6131 64098254 ~ 64098534 (-) True G1400499
TU1599305 lncRNA upstream 8407 64100530 ~ 64100736 (-) True G1400500
TU1599328 lncRNA upstream 36230 64128353 ~ 64198298 (-) True G1400517
TU1599339 lncRNA upstream 55692 64147815 ~ 64148116 (-) True G1400528
XM_036947536.1 mRNA downstream 6575 64064250 ~ 64081609 (-) True LOC110492523
LOC118939600 mRNA downstream 21895 64066186 ~ 64066289 (-) True LOC118939600
XM_021566908.2 mRNA downstream 658657 63424911 ~ 63429527 (-) True LOC110492520
XM_021566909.2 mRNA downstream 658705 63424911 ~ 63429479 (-) False LOC110492520
XM_036947533.1 mRNA downstream 1079685 62959965 ~ 63008499 (-) True b4galt5
XM_036947537.1 mRNA upstream 15872 64107995 ~ 64145663 (-) False plcg1
XM_036947538.1 mRNA upstream 15872 64107995 ~ 64145664 (-) False plcg1
XM_036947539.1 mRNA upstream 15872 64107995 ~ 64145664 (-) True plcg1
XM_036947541.1 mRNA upstream 57208 64149331 ~ 64179898 (-) True LOC110492527
XM_036945795.1 mRNA upstream 88070 64180193 ~ 64200840 (-) True LOC110492529
TU1598025 other downstream 702922 63384849 ~ 63385262 (-) True G1399367
TU1597892 other downstream 795983 63199119 ~ 63292201 (-) True G1399235
TU1597246 other downstream 1352615 62734743 ~ 62735569 (-) True G1398619
TU1594840 other downstream 3333313 60753105 ~ 60754871 (-) True abhd6b
TU1594806 other downstream 3394148 60693609 ~ 60694036 (-) True G1396543
TU1599309 other upstream 11247 64103370 ~ 64105039 (-) True G1400503
TU1599365 other upstream 164803 64256926 ~ 64257433 (-) True G1400552
TU1599377 other upstream 192084 64284207 ~ 64284547 (-) True G1400564
TU1599378 other upstream 193505 64285628 ~ 64285993 (-) True G1400565
TU1599394 other upstream 217760 64309883 ~ 64310456 (-) True G1400578

Expression Profile