RNA id: XM_036947538.1


Basic Information

Item Value
RNA id XM_036947538.1
length 6675
RNA type mRNA
GC content 0.50
exon number 33
gene id plcg1
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 64107995 ~ 64145664 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCTTTGTTGTACAGAGGGGTCGGATGGGGGAAGGGCCCGAGCCGTGCATGATACAGACAAAACTTGCTTGTGGCTCTCTCCGTCGATGGGGAACTGTGACAGGACGCAAAAGGAAAAGGGATATTTCTCCTCACGACTGAAGCGTACGCACACTGTTGGGACCACAATGATATAATCACGAAAAAGGGGAAGACGGGAGGACAGCCGAAGTTGGACCGGCGGAGATGAGCGGGGCCGTGATTGCGGCGATATACCGAGGTGTTGTTCTGCTATTGTTGCGCTGCTCGCGTGTTCCAGTTGGATTTTGAGACGgtatccctgtctctgtctcgcccAGGGCTGTGGAGATTGTTCTGAAAGGAAAAGGACAACAAACAGGGGAAGTGAACATGGCTGGGACCTCGGGCTTCTTTTCCAACGGACCCATTCAGTGGATTGAGAGTGACACCGAGATGAACAATCTTTACCGGGATCTGGAATTGGGGACCGTGTTGACTTTGTTTTACTCCAAAAAGTCCCAGCGACCTGAGAGAAGGACATTTCAGGTCAAACTTGAGACGAGGACAATTATCTGGACCCGAGGCACGGATAAAATCGAGGGAGAAATTGATATCCGAGAGATAAAGGAGATCCGAGCGGGCCAGAAGTCTCGGGACTTTGAGCGCTATGTGGAGGACTCTACAGCACGACTAGACCAGGCTCACTGCTTCGTCATCCTACACGGCACTGAGTTCCGCCTCAAAGCACTCAGCCTAGCAGCGACGTCTGATGAGGAGATGACCATGTGGGTGAAGGGTCTGACCTGGCTGGTGGCAGACACACTCAAATCCCCCACCCCTTTACAGATAGAGAGGTGGTTACGGAAGCAGTTTTATGCCGTAGATCGCAACAGAGAAGACAAGATATCCTGTAAGGATCTGAAGAGCATGCTGTGCCAGGTTAACTACAGGGTCCCCAACATGAAGTTCCTCAGAGAGAAACTTCCGGACTCGGAGTTGAGGAATGGAGACGTGTCCTTTAGCCAGTTTTCCCAGCTCTATCGGAGCCTGATGTTTGACGCCCAGAAAGCTATGGAGATTCCTTTTCTACAGAGgtTCATTGAGAGACCAGAGCAGAAGATCTTACTAGAAGACTTCAAGACTTTCCTTCTGGAGGCCCAGAAGGAGCTGTGGGCCACTGACAACAATAAGGTGCAGGAGTTTATGTTTGGGTACCTGAAGGACCCACTGAGGGAGGTGGAACAACCCTTCTTCCACCAAGATGAGTTCCTGACATACCTATTTTCCAAAGAGAACACCGTCTGGGACTCAGCCCTGGACCAGGTGTGTCCTGAAGACATGAACAACCCCCTGTCTCATTACTGGATATCCTCATCTCATAACACctaCCTGACAGGTGACCAGTTTTCTAGTGAGTCGTCCCTGGAAGCGTACGCACGCTGTCTGAGGATGGGCTGCCGCTGCATCGAGTTGGACTGTTGGGATGGTCCAGATGGAATGCCTGTCATCTACCATGGACACACCCTCACCACCAAGATTAAGTTCTGTGATGTCCTGGCGACCATCAAGGAACACGCCTTTGTGACGTCTGACTACCCCATCATCCTGTCCATAGAGGATCACTGCAGCATTGTCCAGCAGAGGAACATGGCTACCTACTTTAAGAAGGTCTTTGGAGAAATGCTGCTTACCAAGGCTGTGGACATCTCCGCCGACGGATTGCCCTCACCCAATCAGCTTAAGAGGAAGATCCTCAtcaagCATAAGAAGCTAGCAGAGGGCAGTGCCTATGAGGAGGTGTCCACCTCTACTCCCTACTCTGAGAATGACATCAGCAACTCCATCAAGAATGGCATTCTCTTCCTGGAGGACCCCATCAACCATgagTGGTACCCTCACTTCTTTGTCCTGACCAGCAGTAAGATCTACTACTCGGAGGAGACATCTAACAACCAAGGCAACGAGGATGAGGAGGAGCACAGAGAGgTCTCTAACGGTATGGACCAACATATAGCAGAGAAGTGGTTCCATGGGAAGCTGGGTGCTGGTCGCGACGGGAGACAGATAGCTGAGCGGCTGCTGTCGGAGTACTGTCTTGAGACGGGCGCTCCCGACGGGTCCTTCCTGGTCCGGGAGAGTGAGACGTTCGTAGGAGACTACACCTTGTCCTTCTGGCGTTCAGGCCGGGTGCAGCACTGTCGCATCCACTCTCGCCAGGAGGCGGGCAGCCCCAAGTTCTACTTGACAGACAACCTGGTGTTTGACACGCTATTCGCCCTCATCACTCACTACCAGCAGGTAGCGCTGCGCTGTAACGAGTTTGAGATGAAGCTGACTGAGCCTGTGCCCCAGACCAACGCCCACGAAAGCAAAGAATGGTACCATGCCAACCTGTCTCGGAGCCACGCCGAGAACATGCTGATGAGGGTTCCACGTGACGGGGCGTTCCTTGTCAGAAAAAGGGCAGAGCTAAGCTCCTTTGCCATTTCTTTCAGGGCAGAGGGGAAGATCAAGCACTGCAGGGTGCAACAGGAGGGCCAGACAGTGGTGTTGGGGACGTCGGAGTTCGACAGCCTGGTGGATCTCATCAGTTACTACGAGAAACACCCGTTGTACCGTAAGATGAAGCTCCGCTACCCTATCAATGAGGAGACGCTGGAGAAGATAGGCACGGCTGAGCCAGATTACGGGTCTCTGTATGAGGGGCGGAACCCTGGGTTCTACGTAGAAGCCAATCAGATGCCCACCTTCAAGTGCACAGTGAAGGCCATGTATGAGTACAAGGCCCAGAGGGATGATGAATTGTCCTTCAGTAAGAACGCCATCATCCAAAACGTGGACAAACAGGAAGGAGGATGGTGGAAGGGGGACTGTGGTGGGAAGAAGCAGCTGTGGTTTCCTGCTAACTATGTAGAGGAGATCAGTCCTTCAGCTGTGGAGCCAGACAGATCACTGACAGAGAACAGTCCTCTGGGAGACCTGCTGAGAGGAAGTGTAGATGTGTCTTCCTGTCAGATTGtgGTGCGGCCTGATGGTAAGGGAAGCAGGCTGCATGTGTTctccctcctcccagctgcctctCCGAGGGCAGGGCAGGTCTTGGACATCGCTGCCAATACCCAGGAGGAGCTCAAGGAGTGGGTCATCAAGATCAGAGAGGTCACCATGACATCAGAGGCCAAGctggaGGAGGGGAAGATgatggagagaaggaagaagaTCGCTCTGGAGCTGTCTGACCTGGTCATCTACTGTAGACCTGTACCCTTCGACGAGGACAAGATTGGGACAGAGCGGGCGTGTTTCCGGGACATGTCTTCGTTCCCGGAGACCAAGGCAGAGAAATATGTGAACCGGATCAAGGGGAAGAGGTTCCTGCAGTACAACCGGCTGCAGCTGTCCCGTATCTACCCCCGTGGACAGAGGCTAGACTCCTCCAACTACGACCCTCTGCCCATGTGGCTCTGTGGATCCCAGCTGGTTGCGCTGAACTTCCAGACTGCAGacaaGCCCATGCAGATGAACCAGGCTCTGTTCATGTTGAACGGGAGGAGTGGCTACGTCCTCCAGCCACCAATCATGAGAGACGACAACTTTGACCCCTTTGACCGACACACACTGAGGGGCCTTGAGTCAGTCACCCTGCAGATAGAGGTGTTGGGTGCTCGTCACCTGCCTAAACACGGTCGTGGCATCGTGTGCCCCCTGATCGAGATCGAGGTGTGTGGTGCAGAATATGACAGTGCCAAGCAGAAGACTGACTCAGAGGCGGATAATGGTCTGAACCCCACGTGGCCTCGGAAGCCGTTCCAGTTCACCGTGTGTAACTCTGCCTTTGCCTTCCTACGCTTTGTGGTGTATGAGATTGACATGTTCAGCGACCAGAACTTCCTGGCTCAGGCCAGCTTCCCCATCAACAGCCTCAAGACAGGTTACCGGTCAGTCCCTCTGAAGAACAGCTGTAATGAGGATCTGGAGCTGGCCTCTCTGCTGGTGCACATGGACATCACCCGGAGCAGGGCTGAAAATGGGGAGGTGCTGAGCCCGTTCCTGCCGGTAGGAGGTGTCTCTGCAGCGGTGGTTACCCAGACAGGGCGTGAGCGTCTGGGGGAGACAGGCTCCACGTCCTCAGCCTCGTCCATGTCCCCTCTGCCCCAGTCCCCAGCAGCCCAGACCCAGACACAGGCCTACAGAGGCAGGGAGGGCTCCTTCGAGGCCCGCTACCAGACACCTCTGGATGACTTTAGAGTATCACAGGAGGCTCTGCTGGACCTGGACCCTCAGAACAGGAGGATGATGCGCAGGACCAGAGTGGGCGGAGAGAACCGCGTTTAGGCCGGACCAATCAGGGCGCATTCCAACCACCCCAGCTCCTCCCCGTACCGATGATGTCACTGACTGCTGTGAACACTGTTTCTATGGAAACGCCCACCACCGCTTTGGCCTACATTTCAGGCAGCTCTCCCttgctctgttctctttctctcctctgtgtccccCTCCTGGAGTGAGTGTGAGGTGGAGGGGGcgggaagggagagggaagacAAGGATGACAAGAAAAAAATGATACGTGAAGTTTCAGCCCTCGGCTAAGATGTCGGGAGATGGGGAATTTTGGCGTGCTCGACTCGAGCGCAAAGGTTTGCGAGGGAAAGAAGAAtggaagagggagggatgagatgaGGGAGGGAGCTGTGAAGGTGTCAGTTTGAAACTGTTTTCCACGTTAGGTTATtatttttctcttctctctggcGTATATGagtatatatatttattcctGCTGTGCTGTTGGCCAGACGACGGCAGCAGCCAACCTGCTCTTAAAGAGCTTCTGTCTCcatgtttttttaattatttttatttaaacttttaaaCATTCATGTGATTTCTTTTTTTAATGTGTAAAACATGAGGGCTCTCTGTAGAGTAACTCAAGCCTTTATATACACACATAGGCTTTTCTTATTTTGCCAAACTTGCATTCTGAAAACTACGGATCATTCCGTTGCCTGCCTTGTGATGTAAAAACAGTCACACTCTTACCCCCTATATACTATACAATCTGGAAAGCTGAAGTGTTACAGATCCcgtgatagaaatgtaaaggtaattgaGCCGACAAATGCAGCAGTGACAGTGAAAGCAGTCTGTGCTAACGTGGGAACATTGTCTTTAAATTCCAATCACGCTGTAGAACTGAACTTCGGCAGTGTGTCTTGAATAGAGCcaaaattacccccccccccccccccccaatatagaACTTTATCAAAAGTGCTACCCTATTTGGAGATTAGCATGGCATTATTTTCCTTTTTTAGGATGCCATACTGCATTGTAGAGTGCTGGAACTGGGCTAGCCTGTCTGTCCCTGAAAGCAATGCTGTGAGTTCAAATGCTAGTGATGAAGTCACATCCTTAATGTTTTATCTCTGTTTCAATGTGGATAtatggtggagggaggagagacagggtgttgtattcagttctgcccacacgttTACAAGACGGGCTTGGTATTAGCAGACATTCCggtgtttttgtttttaaataatgttttacTGTAGCAAGTGTCTACAGTTTCTGCTCTGGACTTCATTACATTTCCACTTGGAATGAAAGGCATTAGTTATCTTTGTTTACCTATGTGTTAAAGTTGTCTAAATTGTAGACCGTCATTCCTCTTAAATGTACCGTCTTAACTGGTTTTGAGGGGCTTGCATGTAGATAATCTTAGAGTAGAGCGCGCTAGGAAGTCGACTAACCTAATTAAGTGCAGTATTGCTGGCCGAGAAGGACCTAACTGAAATCCTATACACGGTATCGATTGAAAGGCTATTCTTAAATGTTTGTGTAGGTCGGTGGTTCTTGTATGCATATTATCCAGCTGAGGGGATGTTTGTCTTTTCCATTGCGGCATTCCAGAGATTCCAGATGCTCCCAAAGATTTTCTGAAGATTCTTTCAGTACTGCTGATTGATAGACTTCTGTATTAGACTTGCAGACATGAAGGGGTTAAATCACTGGTTTATAGTGACATGACTCAGCCTGCAGGGGTCATAACAGCACATTTATGTATATCGGTGTTGTTCCTGAAAGCTCAATTGATCATTCCTGACTGACAAACGCCCCCAGTCGGTGGTTTAATGGAAGTTGCTCTCAGCAACCAATCTAAGGTCATGCACTTTTGTGCTTACCCCCACAATAGTTTAGGCTGGGAGTAGGGGACGCCGGAGTGATTTCACTTGATATGCAATGCCCCTCTTGAGCAGACCATACTCTAAAACCAGTATTTAGAATGTTATGCCATGGAGGGAAACTCCTTTTGAAGCCATATGGAACATGGGGGTTGGAACTGAATATTTAAGGGCTGACTCTTGCCACCTTTTGTTTTGCAGCCATTGTCAAACTTTCATGGTAAGGTTGGGGGAGTGTGTGCTTTCTTCCATGGGCCTCGATGTACACGACTATATCTACATTTGTTCTTTCAGAAATCCTGTTGTCATGTTTCTTTTGATCTAGACACATCAATTGTGACTGATGGTCTCATTTACAAACCAAGCCTTTCTGTATTGTGCCTAAGCTATGGAGAAAACGTATTCCTTTTCATTTTGCCTTTCATATGCAACATATTCAAGCCTGAGAATTAAAGTACTTAATCAACTATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1599305 lncRNA downstream 7259 64100530 ~ 64100736 (-) True G1400500
TU1599304 lncRNA downstream 9461 64098254 ~ 64098534 (-) True G1400499
TU1599300 lncRNA downstream 12380 64095214 ~ 64095615 (-) True G1400495
TU1598666 lncRNA downstream 59862 64047926 ~ 64048133 (-) True G1399974
TU1598656 lncRNA downstream 73913 64033854 ~ 64034082 (-) True G1399965
TU1599339 lncRNA upstream 2151 64147815 ~ 64148116 (-) True G1400528
TU1599354 lncRNA upstream 63331 64208995 ~ 64209728 (-) False G1400542
TU1599355 lncRNA upstream 63331 64208995 ~ 64210202 (-) True G1400542
TU1599318 lncRNA upstream 74724 64220388 ~ 64244660 (-) True LOC110492532
TU1599331 lncRNA upstream 114617 64260281 ~ 64260568 (-) True G1400520
XM_021566915.2 mRNA downstream 15872 64088184 ~ 64092123 (-) True rab5if
XM_036947536.1 mRNA downstream 26386 64064250 ~ 64081609 (-) True LOC110492523
LOC118939600 mRNA downstream 41706 64066186 ~ 64066289 (-) True LOC118939600
XM_021566908.2 mRNA downstream 678468 63424911 ~ 63429527 (-) True LOC110492520
XM_021566909.2 mRNA downstream 678516 63424911 ~ 63429479 (-) False LOC110492520
XM_036947541.1 mRNA upstream 3667 64149331 ~ 64179898 (-) True LOC110492527
XM_036945795.1 mRNA upstream 34529 64180193 ~ 64200840 (-) True LOC110492529
XM_036947542.1 mRNA upstream 60128 64205792 ~ 64217501 (-) False LOC110492530
XM_036947543.1 mRNA upstream 60128 64205792 ~ 64219320 (-) True LOC110492530
XM_021566929.2 mRNA upstream 74720 64220384 ~ 64236499 (-) False LOC110492532
TU1599309 other downstream 2956 64103370 ~ 64105039 (-) True G1400503
TU1598025 other downstream 722733 63384849 ~ 63385262 (-) True G1399367
TU1597892 other downstream 815794 63199119 ~ 63292201 (-) True G1399235
TU1597246 other downstream 1372426 62734743 ~ 62735569 (-) True G1398619
TU1594840 other downstream 3353124 60753105 ~ 60754871 (-) True abhd6b
TU1599365 other upstream 111262 64256926 ~ 64257433 (-) True G1400552
TU1599377 other upstream 138543 64284207 ~ 64284547 (-) True G1400564
TU1599378 other upstream 139964 64285628 ~ 64285993 (-) True G1400565
TU1599394 other upstream 164219 64309883 ~ 64310456 (-) True G1400578
TU1599433 other upstream 299691 64445355 ~ 64448472 (-) True si:ch211-117c9.5

Expression Profile