RNA id: XM_036947544.1


Basic Information

Item Value
RNA id XM_036947544.1
length 5629
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC110492532
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 64220384 ~ 64244660 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCAGCTGTTTTGTACGTTCTGCATTCTGATCCGAGGATCAGCTGGAGGAAGCAATAACAGAGGGAAATTCTGCAGGGGAAAAAAATCGAGCAAGAGGGAAAAAACTGCAGATGTTATACTCTGAACATCAAGTGTAAATTCAAGTTTTACACGAAGCCCCTTCTTCTACGAAGAaagcctttttttttattttgtattatggtGTTTTAACTACCTCACTTAAAAGGCAACCTAAAGCTATGCTTTAAGAATTATTGTCGTTTCTACTTTGTGTGAGATCATCACGTTTACAATTTGAAATATATTGCTAATACAGAATGAATTAAACCAGTCACCAGTGCTGTCACAATGGAATCTTTATAACCACAAGTAATAATTTAACAGGCCTTTGCAGCGATACCAAGTAAAACCTTACATTTGCACTAAGGAAGCCTGTCGAGTCCTGTAAGAAAATCAACCTACGAGATCAAGACAAGAAAAGGGTTGAAGCAAAGAGAGGCCAAGAAAACCGTGCTCACTTTCCTGACCTGGCAACTGTTTGACAAAGCGAAAAGCGAAATAACTAACTAAATAAGAGAAACAAAAATACTTAATAAgtagcaaacacacacaaaggcagCTAGCTATACCTTGAGAACTACAACTATACACAGAACCTGACTTCCGCGATCCCTGACCCTTGACTTTTTACCCATTGACGTGTACCCGACCAACCGGCCTAGCCATGTTCCAAGCTCTGAGCAGCCTGTTCTtcggagaggtggaggaggtggccGCAGAGATCAAGGGGCCCAACCCCTGTGTGACCGACGCTGATGAGGAAGGATGGATGCTGGTCAACCTGCCCGGGGAAGCTGATTGTGCGATGCtagtagagggagggatagaggcgCCATCGATAGCACAGGCGCAAGCACAAAACAACCAATCAAATCACCCAGACACACCCACCAGAACTGAGTGCCCCGTCCCATCTCCAACCCCTCCCCCCCAATATCAGAATCGCCGCAGAACACACAAAGCTTGTTCACGAGCGGCAACAGTGGCGCCATCAGaccccctctccactctcccttcTGCTAGCCCGTTAGCCACGGGCATCGTTACGCCCATATCCCTAAAAAGGCGGGCCAGGCTCTCCACCCCATCTGTGTCCCCTGGCAGTAGTGGGTCGGAGAGAGGCTGCATGGACGAGAGCTGGTTCGTTACCCCTCCCCCCTGTTTCACTGCAGAGGGAGCCACGGCCGAGACCAGCCCCATGGAGGATCTGCTTATAGAACACCCCAGCATGTCCGTCTACGTCTCCCCTAGCAACCTGTCCATGATCTCCAACGGCAACCTGTCCATCGTCGGGGAGGAGAGCATCACCAGCCTGACAGGCAGCATGAGCAGGGTGGCAGAACCAGCCGCTACCTCTGCCGTCCATAATACCATGCCCaccagggtgacccgaggagcCGCTGCCCAGGCTGGTACCCTGGCCAAGGTGACCCAGGTGGCCAGGGTTCAGAGGGGCAAGGCCCGCACTGAGAGGCGCCACCTTGGACGCAACCGCATCCAGCGCCAGAACCGCACTAGGGAGCAGGTTCCCCGCCACGCAGCCCACGCTAGAAACACCTACCTGCACCAGCCCTGCCAGCGTAACATCTGCCACTGAGCTCCCAGGGGGAGCCATTTACTCTGAGGGCATTAGTGGTTATACTCCCCCTTACATACATACAGGTAGATttatatggacacacacacatatatactcaTGTAGACAAATATGTAAATACACATGCACACAACGTACACGCATCATTTACACATGCCCACACAGCACATAGACATTCTCTCTTTCACTAAatcactctcccacacacacacacacacacacacacacacacacactaattgatTTACGTAGGCTACTGTGCCATGTTAGGCCCTAAACCCCAACCAAGCCCTCTAATAACTTAAGTCTATTGTTGTTAGCTGTCACAtataaacatttttgaaaaacttGCAAAAAAATATTACTTAGCAACTAATATGTGTGTAAAACTATAAAAAGTTCCATCTACTCTCTCCATTTCAGTTGAAACACTCATGTCCTCTGTCTCTTCCTAGTGGAAGTCCACCTATTTACTGTCCTGGAATACATGGCCCTCTCTCCTTTGCAGCCGTCCTAATGCTTTTAATCAGGTTGGGGGACAGGCAGGCAAAGGAGGAGAAATTAAAGATGCTCACTCTTTTTCTGCGGGAACAAGCTTTTATAGGGAATCTTTATTAGATAGCACACCTGTGGACATGTAATCATGTTATCCGTTGAGTATGTACGTAGCTATACTTGTTATAAATGAAGACAGGGAAAGGCTTCCCACAGGAAAAACACCTCATCTTGTCCTTTATTTGCCGTGTTTGAGgtacaaaacattttttaataaaaaaatctgTTCGCAAAAAGGAAGAGTATACCGTGTACATTACAGTGAGAGAGGAGAAAAACCAGAAGAGGTGTTTGTCCTCTTGTCCCAATGTGAGGGATGGAAGCAggtagaggaaagagaggaagacgaAAACAGACTAAAGAGTAAAAAGAAGTCAAAAACGACGAATTGGAGAGTTTAGATAGGATGACAGAGGAACCAGAGTAGATGTAGTTGACTGTGTAGTGTAGCTTTCTGGGCAACCAATAGTTAATTTTTAGAATGCCTAACTGGCTACTTTTACATATTTGGCTTACCATCTGTGACTAAGACAAGTTTGCCACTGCAGAAACAAACAGGCACTCTTATCTCAAGTCAGGCAGACTTGCAAAGCAGGAAACTGATTCCCTAATTTCCTAAACGTTTTTGTTCAACAACTACAACACGATCAGGAAAGTAATTCAGAGATGTCTGGTCATAAGAAGTCTAGTATAGCTAGCTTCAATGACTGTGCATAGTAAACTGTGTATGTCCTGTGCAAATTACTTTGTTGGGACGTACCATAATGATATATGTAGGGAAACTAGCCAAGGGTTGCCTGTAGGTTACAAGGTATGACAGGCTAAAGTAGGTGCAAGGCGGTATAGATGGCAactctttattttattttggtttgtttgtttgtctgctACTGTTATTAAAGTTATGGAGAAGGTAGGCCTAACCAATGCTctctgaatgatgtctgtgacaGGAAAAGCCTGTTCCCTGCAGCCCCATAATGAGAGCACATCGTTTCATCCAAATAGCTGACAACCTAAAAACTTGGCCTAGTTTGACAGAATGACTGTGAAAGATTCACACTTTGAGGAGAATAGTcaaaaaaaaaagagaacaaATCTATATGCATTTGCTCAGCACACACATTGGGCTCCAACTGATGTtgttgtgctgtgatgcttcTGCATTAAGACACCTCCCCCCTAACTAAATATTAATCAAGTGACAACCTTACCCATGAAAAGACAAACAGGGAAATAGATAACATCGAACAATCCCTTTTCACTTCACGTCATTCAGTGACAACAGGGTAATCATGGTAGGAGACTcggggtgaacacacacacacacacgatgtccACCGGGCTGATACTGCTCAGAGTTGCTAGTAAAGACTAGCTCAAGGACAGAGAATTAGTTCTACACCCACTCCCTGGCCTCCTAATAGCACATCCAGCCGTAACAGTGTCCCCCACCTTAAGATCTAGCTTACAGAGATGTATTCAACTACAATAGTAAACTATGGTGCTGAAGTGTATATGACTATATACTAAAGTTTGTAAATGATTTGAGACATGGATGTAAGTTTGCACTGTCATACATTTTGGTGAGTTTTAGCTGTGTGATGTCTTTTATTCTCCTTTGGGATGTTTActttttctttttgttttgtatcaAACCATCAAAGgtctgtgagagtgtgagaggatGTGTGTTCAAAAAAATACTTCAAAAGACAAATAATGATCAATTATTTTTCTTGTACATATTAGAATACAGGTTGTAATGCTCCTTGCCGTTAGGTGTCAAAGCGACTCAGGATTAGAGTCCTTAAAGTAGCTACCATCTTGACTGAGGACAAGACTGTCCCTGCCTCTTTCCTGAATAGGACAGTAAGGATGCATCTCAATAATCTAAAGTGGCATCCTATCCACTTATCCTTTCCTTAAACTACACTGAGATGTGACCAATTGAGATGTACCCTATTGGAGCTTTTGGGTTAGATGTGTTAACGTTCCAATTAGACACTGCCCTCTAGGGGGATAAAAGTGTAATAACTTGTAACGACACAGGATCATTTCATGCTGGCGTCATCATAACACAACCCATATTTCAAAGTATAAAGATGTATTTGTGGGAGCAGTGGAATTGTTCTCTAGATACAGTGAGAGTGAGGTGAGAAATTGTTCTTATTGTTTAGAATGTTCTGAACTAGAAACATTTATTTGTCCCTTCAATCACAAACCACCATTTTCCACTCAACGTATCGCCAACTATCTTGTAAATTACtatattttatttgaatgatCTACTAATATGatataattattaatattatGTATATTTATTTTCTGTTGATGTTTTAAATGATGACTGTATGTAACTCTGTTTGATCCTATGAATGATGCATTGTGTGGATTGCAGTAacgactcactcacacacacagatacacacacatctgGTCTCCATACTTCCTAAACCCCTAGGGTTTTCTGAACCTTATACTACAGTATCTCTGTGGTCACACTTCTTACTCACATGATGAAGACATTttacaaagagagaggggagggggcctATACATGAgaccatagctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaactcaccACCTCTAACAAGGCCTTGTTGGTCCTCACTGCGAGACTGTTTttctctttttcttgttgttcTTTTCCTTCTTTCCATCACCCTCTCACCTTTACGTCCATGTTATCTCCAAGTTGTTGTTTTCTGAGTATGTAGTGTGGGACTAATGAAAGGTGTGAGTTTAGGGTGGCAACCCGCCAATCACAGAGAGAGGGCGGGGCCACCAGGTGCACGTGTGTCTAGTGTGATGTGAGAgttgtgggggagggagggaggaagaaagaggggaTGTGACAGAGGATGGAGTAAGCAGATAGattgaaaaaaaatctgaaatgaaatgtatcaacaaaaaaaaatatgcttGTATTTTTCCCCGTTTAGTTATTATAACAGTTGTTCACCTGGTATGTTAACGTTTTAAAAGAAAGGGGGTTGATTGTGTGTGGATTATTTTTGTTCTGCTTTGCGCCCTAAAATGATGGCAGCTTTAAGATACTTTGGGGTTCACCCACGTACCATCTCGGATGGGTACACCCCTCCCCCGTCAAAACAACTATTTATAGACATATAAAAAAGATTGGTGTATCTGATATCTATGGTGATCGTGCCTTTCACTATTTCTGCATGGTTTTTGTGATGTACTGAATTGTTCCATCCCTGAGTGGACAGTCAAGTCCATAGACAGTCAAGTCCATAGACAGTGAAGACCTATGCAACCACCAACGGATGGGTTAATATAACATCCATTCAGAAAAACGCAGGtaccacacaacaacaacaacaacaacaacaacaataaacactCAGGTTGACAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1599355 lncRNA downstream 10182 64208995 ~ 64210202 (-) True G1400542
TU1599354 lncRNA downstream 10656 64208995 ~ 64209728 (-) False G1400542
TU1599328 lncRNA downstream 22086 64128353 ~ 64198298 (-) True G1400517
TU1599339 lncRNA downstream 72268 64147815 ~ 64148116 (-) True G1400528
TU1599305 lncRNA downstream 119648 64100530 ~ 64100736 (-) True G1400500
TU1599331 lncRNA upstream 23782 64260281 ~ 64260568 (-) True G1400520
TU1599369 lncRNA upstream 32719 64269218 ~ 64269550 (-) True G1400556
TU1599471 lncRNA upstream 167202 64403701 ~ 64403998 (-) True G1400639
TU1599484 lncRNA upstream 193211 64429710 ~ 64430791 (-) True G1400652
TU1599489 lncRNA upstream 212903 64449402 ~ 64450195 (-) True G1400655
XM_036947543.1 mRNA downstream 1064 64205792 ~ 64219320 (-) True LOC110492530
XM_036947542.1 mRNA downstream 2883 64205792 ~ 64217501 (-) False LOC110492530
XM_036945795.1 mRNA downstream 19544 64180193 ~ 64200840 (-) True LOC110492529
XM_036947541.1 mRNA downstream 40486 64149331 ~ 64179898 (-) True LOC110492527
XM_036947539.1 mRNA downstream 74720 64107995 ~ 64145664 (-) True plcg1
XM_021566937.2 mRNA upstream 79721 64316220 ~ 64342250 (-) False LOC110492535
XM_021566938.2 mRNA upstream 79721 64316220 ~ 64342275 (-) True LOC110492535
XM_021566940.2 mRNA upstream 111746 64348245 ~ 64391338 (-) True LOC110492536
XM_036947545.1 mRNA upstream 155129 64391628 ~ 64397409 (-) True LOC110492537
XM_036947549.1 mRNA upstream 210299 64446798 ~ 64485638 (-) False si:ch211-117c9.5
TU1599309 other downstream 115345 64103370 ~ 64105039 (-) True G1400503
TU1598025 other downstream 835122 63384849 ~ 63385262 (-) True G1399367
TU1597892 other downstream 928183 63199119 ~ 63292201 (-) True G1399235
TU1597246 other downstream 1484815 62734743 ~ 62735569 (-) True G1398619
TU1594840 other downstream 3465513 60753105 ~ 60754871 (-) True abhd6b
TU1599365 other upstream 20427 64256926 ~ 64257433 (-) True G1400552
TU1599377 other upstream 47708 64284207 ~ 64284547 (-) True G1400564
TU1599378 other upstream 49129 64285628 ~ 64285993 (-) True G1400565
TU1599394 other upstream 73384 64309883 ~ 64310456 (-) True G1400578
TU1599433 other upstream 208856 64445355 ~ 64448472 (-) True si:ch211-117c9.5

Expression Profile