RNA id: XM_036947561.1


Basic Information

Item Value
RNA id XM_036947561.1
length 5195
RNA type mRNA
GC content 0.53
exon number 16
gene id LOC110518541
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 65131650 ~ 65620292 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCCGTGGGAGAGAGTTTGCGCGTGCTTGTGGGCCGACAGCAGGAGAGGTCGAGAGAATGCTGGGACCGTGGAGCTCGCGCCAATGGACTTGGACACGAGCTGGGCTTTCCGGTGATGGAGAAGGGCCGGTCTGTTGACGGTATCCATGGTACCCTCCAGTGTGGCAGTGAGCTCCAGAATAGTGACCAGCCTGTATGAGAGATCAGCAGCCTGCTGTGTTGGAACTGTGACTGTCTCCAACCACCAGTGACAGAGATGAATGTCAGTGAGTAAAACAAATCCTAGTCCAAAAACATAAGGATCCCGAGGACAAGAAAGACGGCACCTCGTTAGACACTTGTTTTTCTTTCTGAGCATGTAGCTGCCATGTTTCCACATTAGAATCCAGCCGTCATCAGAGCAGGATGCATGCCAGTGCCAGGAGCACTGGGCATGGAGAGGGCAGCTCCGCACGTTCAACTAAGTTACAGAAGAACCCGAAGCAGGGGTACCGTAAACTTGGCGTGGCTAGTGGGTCCGGGTCAAAGTCGGCCGGGACAGGGTCAGGGGGTAAAACCTTGTCTATGGAGAACATCCAGTCCCTGAACGCAGCCTACGCCACCTCCGGCCCCATGTACCTAAGTGACCGCGATGCCTTGGCCTCCTCCGGTGGCTACCCTAAAGGAACCATGACTCTGGGGCGAGCCACCAGCAGAACCTCCTACACGGGCCGGACCACAGCCATGGGCAGCAGCcccaacatcaccaccacatcaGACAGCCAGGGCTATGGGGACCAGAGCCACACCCAGCACCTCCAGGCAGGGGGGCCCTCAGGGCTGCTGAGGCAGGCTGGACGGGGTGGAGAAGGAGCGGGAGAAGACATCCAGGTTCAGCTCAGGGAGCTGCAGAGAGAGAATGAATTgctgagaagagagatggatggagagagggatgggagagaagggaggatgagCTCTTCTGTCAACAGTAGAAAGAACTTCTGGAGCCCGGAGGTGAAAAGTCGAGACAGAGGGatgaggaaagaggagggagccCTTACATCCATCCTGAAGGAACAGAAGTGGGCCTCTCCAGAGGAGGACCAGcatctccAGTTGTCAGTGCATGGGCTACAGGAAGAGCTGAGAAGTCATAGAGAGATGAACAGTCGTCTGCAGCAAGAGAACTCGGGATCTCACACAAACATCTCCACTCACACCGGCTCGAACCGAGAACTCCATATTGAGGACCACCGGGCTGGCATCAGCCCTGGACACAGTCCTGGTCTGGGCCCCAGTCACCTCCACAGCCCTGGGCAAAGACATAGCCCCGGCCCTGGTCTAGGAGTCAGCCCCAGACACAGCCCCAGTAGCACCTACAACCATGGGCCCAGAAACAGCCCTGTCCATCCCCATAGCCCTGAGTACAGCTCCAACGTCAGACACCACCAAGCTGACATCCACAGCCCTGGGCACAACTCTGGGCCTGGCCCCAGACACAGCCCTGCTAACACTCTCATCCCCTTGTCTAGAAAGAGCCCCAGCCACCTCATCCACAGCCCTGGCCGTTGCCTCAGCCCTCCCAGCAGCCCATGCATGGTCCCTGGGTGCGAtggcttctcctctccccctcccctggaTCTGACGGAGGAGAACTTCAGCCGACTGCAGTCAGATCACGAACGGCAGGGCAAGGAGCTGTACCTGCTGAGGAAGACCCTGGAAGAGATGGAGCTGAGGATTGACTCCCAGAAACAGACGCTGGGGGCCAGGGACCAGTCCATCCAGAGGCTGCTGGAGATGAtccagggaggagggaggggtcagCGAGTTGAGAGGTCAGAGATAATCACCATGGCAACAGCACGCGAGGAGGCGGAGTACCAGGTGGGTCATCTGGAGGAGCAGCTGGaccagagggagaaagagaacctGCATTTGAGAgagGAGCTGCACAGGAGGAGCCAGCAGGACCCCACCAAGACTAAGGCCCTGCAGACTGTCATTGATATGAAGgacACTAAGATATCGTCTCTGGAGAGGAACATCCGAGACCTGGAGGATGAGGTCCAGTTGATGAAGACCAGCGGGCTGCTCCACCCTGGCGAACGCCTGGATGAACTCAAACACATGGAGGTCTATAAAAGCCACTCCAAGTTCATGAAGAAACAGGTAGACCAGCAGAAGCAGGAGCTGAATAAGAAGGAATCAGAGATGCAGGCCCTACAGACCAAACTGGATGCTCTGACCAACCAGAACTCAGACTGCAAACAGCACATAGAGGTGCTCAAAGAATCACTCAGCGCCAAGGAGCAACGCTCTACCACACTGCAGACCGAGgtggATGCGTTGCGTGTTCGTCTGGAAGAAAAGGAGTCCTTCCTCAGTATGAAGACCCAGCAGCTCCAGGACCTGACGGAGGAGAAGGACACGCTGGCCGGAGAGATCCGGGACATGAAGGATATGCTGGATGTTAAGGAGAGGAAGGTCAACATCTTGCagaagaagatAGAGAATCTTTTGGAGCAGTTAAAGGACAAGGACAAGCAACTGACGGGTCTGAGAGACAGAGTCAAGGGTCTCCAGACTGACTCCAGCAACACAGACACAGCACTGACCACGCTGGAGGAGGCCCTGTCTGAAAAGgAGCGAGTGATTGAGCGTTTGCGTGAGCAGAAGGAGCGGGAGGACAGGGCACGGCTGGAGGAGGTGGAAAGGATGAGGAAGGAGAACCAGGACCTGAAGGATAGACTCTCCATCCTGACGACACACACACCTGGGAATACGGAAGAGTCAACCAGGAAGTTGTTAGAGGTCAGCGACAGGATCAAGCTGCTGGAGGAGGAAGTGACGCGCTACCGAGAAGAGTCTGGGAAGTCCCAAGCCGAGGTGGAGAGGCTCATGGGTATcctgagagagcaagagacggAAAGAACCAACAAGGAGAAGAAGATCACTGAGCtggagaggCAAGTGAAGAGTCCAAACATCCTTAAACAGATGGTTTCAGGGGAGAGGAGGCCAGATGGACAGACTGACGGACATCCACACTCCATCTCAcagCTGGAGGAGATGATGAACGCCCTGGAGAAGACCAGGCAGGAGCTGGACACCACCAAGCAGCGCCTCTCCACTACCCAGCACTCCCTGCAGGAGCGGGACGGTCACCTGACCAACCTGAGGCTCGAGAGACGCAGACAGCTGGAGGAGATCCTGgagatgaaGCAGCAGGCTCTTCTAGCTGCGATCAGTGAGAAGGATGCTAACATAGCCCTACTGGAACTGTCCTCCTCTAAACGTAAGAAATCACAGGATGAGGTGATGTCACTGAAGAGAGAAAAGGACAGGCTCATGCACCAGCTCAAACAACAGACCCAGAGTAGGATGAAGCTCATAGCAGACAACTATGATGAAGAACATCTACAccctcatcatcctcaccacccCCACCCGGGGGTACACCCGGCTCACCCTGCTCACCCACACCACCGGACCCCTGCAAGAGGACCACCCCACGCCAACCACAGAGCCCCAATGGACCAGGACGATGAGGAGGGCATCTGGGCATGACCGTCGCCATGGGGACTGAAGCTCCAATCATGAGAGCTGCTGGTGAGCCGGGTTTTGAACCAAACACACACTCCTGTTCATCCCGGTGGAGCAGCTCTACTGATCCAGGGACCAGACTGGCTGCAGCCCAGGATCCTGCCCACCTGCCATGGTTGAAGACAATCCTTTTCCTGCCTTCAGTTGCAGAGATGCTCTCTTTCCTCTCAGTGTTTGACAATCAGAGAGCATAGACTCGTAAAGTCCCATGACCTCCGAGGCTCCGTTGGACAAGTAACCCTGACTGTTTCCACTGTACTTATGAACTACGACTTTAACTCTCCAACAGTCAACCAATCATCTCACTGCCCCTGCCAGGTTCACTGGCTGACTGATAAATCCTAGACAACAAACTAGTCAGCCTAAAAACCAGAAGGACCAATCAGAAAGGACCATTGAGAGTGACCAAACATAATTTTTTTGTGTGTCGTTTTTTTAGATAGTTTGTGAGCCCTTGAAAGACTATGGGAAAGAGCAAATCCTGATGTGGGTTTGTTTACGTAGCCACATACGGATAGCATTAGCATGGTCCACAACATGGACCTCAGATCCACATGGACCTTCTCAATGTACCGTGCCAAAGGAACCACTCCCTGTCagcagagagacactgagagggGAACCGGGTTCCAATTACTCTAGAACCCTCAAAGAGAACTCAGAGAAGTGTTCTGTGTATGCTACCTTTCTCTGAATGTTCTTAAGTCTGGAAACACTCCTGTCATCCTATCACTGGACAGCTCTCTTGGTTGACAGTGCTCCAGGTAGACGATGTCCATAGgaactgatctaggatcagtgccCTTTCTAAATCCTTAATTATCAAGTGGGAAAACACAACTGACCTCAGAccagtgtctaggggcaacttcgtCCCTCTCCGGGTGAAGGGTATAAACTGTGACCAAACAAAACCCTCTGAGGAAATCAAACTAGGATCTGTTTAGAGGTTGTTTTTTCTCTTGTGTTTTTCTCTCCCCCTGCTGTACTTTGTTTGACTAACGAGTatcatgttgtgtttgtttttctaCATCTGAAACAGATTGAGTACTGTTCTCTTTGAGGTTTGTATCAGTTGTGTGTTTCTGCTTGTGGGTGATGTTTTATTTAGTAGTGTATTTATTGACTAGTTTAATTGCAACATGCATTGGAGTGGCAGTATTTAGGTATCCATGTTGAAGTCAGCACTCCCCAATCATCATTTTGGAATCAGAGATTGAGGAGTGCTGCTTTCAGGGGACGAGTTGTCTATACATATCAGTTTGCTAGTGAGGATGTCGTGGTGTTTGAAGGTGACATGATCTCCGTTCTACTGAACCAGCAGTAAGTGTTTAGCTTGTacagttttctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgtgtgtgaacagTGTGAGGACTCAATATGCTCAAACTCTGCTATTGACTTGTTATACAGTGTGTTGCCATGGTCAATATTAGTTTCTCGTTCAATAAAAGTGTGGCGTTTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1599922 lncRNA downstream 14845 65116413 ~ 65116805 (-) True G1401011
TU1599889 lncRNA downstream 37392 65093483 ~ 65094258 (-) True G1400990
TU1599877 lncRNA downstream 49027 65082204 ~ 65082623 (-) True G1400978
TU1599861 lncRNA downstream 58220 65073201 ~ 65073430 (-) True G1400962
TU1599852 lncRNA downstream 68614 65062816 ~ 65063036 (-) True G1400953
TU1600368 lncRNA upstream 28104 65648396 ~ 65653934 (-) True G1401376
TU1600371 lncRNA upstream 34325 65654617 ~ 65654855 (-) True G1401378
TU1600654 lncRNA upstream 85455 65705747 ~ 65705961 (-) True G1401632
TU1600378 lncRNA upstream 88333 65708625 ~ 65709149 (-) True G1401383
TU1600363 lncRNA upstream 100215 65720507 ~ 65754363 (-) False LOC110492562
XM_036947560.1 mRNA downstream 1883 65094789 ~ 65129767 (-) True wnt5a
XM_021566949.2 mRNA downstream 140179 64984262 ~ 64991471 (-) True LOC110492545
XM_021566948.2 mRNA downstream 443069 64682618 ~ 64688581 (-) True LOC110492544
XM_021566947.2 mRNA downstream 458030 64666724 ~ 64673620 (-) False LOC110492543
XM_036947557.1 mRNA downstream 458030 64671770 ~ 64673620 (-) True LOC110492543
NM_001129991.2 mRNA upstream 2883 65623175 ~ 65628493 (-) True tlr9
XM_021566961.2 mRNA upstream 12838 65633130 ~ 65644141 (-) False apeh
XM_021566962.2 mRNA upstream 12838 65633130 ~ 65644141 (-) True apeh
XM_036947562.1 mRNA upstream 39988 65660280 ~ 65704778 (-) True cttnbp2nlb
XM_036947564.1 mRNA upstream 95419 65715711 ~ 65740776 (-) False LOC110492562
TU1599433 other downstream 683178 64445355 ~ 64448472 (-) True si:ch211-117c9.5
TU1599394 other downstream 821194 64309883 ~ 64310456 (-) True G1400578
TU1599378 other downstream 845657 64285628 ~ 64285993 (-) True G1400565
TU1599377 other downstream 847103 64284207 ~ 64284547 (-) True G1400564
TU1599365 other downstream 874217 64256926 ~ 64257433 (-) True G1400552
TU1600638 other upstream 15190 65635482 ~ 65636372 (-) True G1401617
TU1600365 other upstream 100215 65720507 ~ 65754610 (-) True LOC110492562
TU1601912 other upstream 805259 66425551 ~ 66426322 (-) False G1402686
TU1601915 other upstream 805259 66425551 ~ 66426322 (-) True G1402686
TU1601943 other upstream 864609 66484901 ~ 66494667 (-) False G1402707

Expression Profile