RNA id: XM_021566962.2


Basic Information

Item Value
RNA id XM_021566962.2
length 2941
RNA type mRNA
GC content 0.51
exon number 23
gene id apeh
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 65633130 ~ 65644141 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCGACTTGACAAAAGTGATCCGCTCCCATCCAACGCAGTCATTGTCAAATTTTCCCGATTCACACGAAAATTCCGGAACATGGCAACCCTGGTGTACCCTGCCTAACAACACAGAGAAAACGAGACCACACGCAGAGCTGTTGATCAGTCAGAGCCGCGATGGAGTCCCAGGTAATGACTAATCCGGAAGACATCTCCAAACTCTACCGGGAGTTGAGCCTGTTTCCCTCCTTGACCCGAGCTGACGTAGGGCCAGTCATAACATCGCAGTATGGAGGAAAATACAGCAACATctacacagAATGGAGTCAGCGGGATCTGGAGAGGAACGAGAATGTCAAGTTCTGTCGGCAGTACATTGTGTTTCACGACGACAAGTCTGTGGTCTACTCTGGACCCTCAGGGAACTGCACAGAGATCAAGGGAGAGTTGCTGAGTAAAGACTCTCCATCAGGAGACATGAAAGCGGTGGTGAGAGAGAGCAACATCAAAGGAGAGGACAAACAGTTTCTGGAGATCTGGAGTAAGAACATCAAAGTGAAGAGCATCAACCTGACAGCCCTGAAGAAAcatggcaaggtctatgaagacgaccagtttgGCTGCCTGGTGTGGTCCCACTCTGAAACTCACTTGCTGTATGTGGCTGAGAGAAAGAGACTCAAGGCAGAGTCCTTCTTCCAGTCAGTGTCTCCTGAGTCCTGTTCTCTTGCTGATGAAGAGGAGGGGGTGAAAATGGGCAAGGAGGAGGAGACTACAAAGGGGGAGCAGTTTGTGTTTTACGAGGACTGGGGGGAGACCTTGGTCAGTAAGAGTtcacctgtgctgtgtgtgttggaCATCGAGGGTAGCAACGTCTCTGTGCTAGAGGGAGTCCCAGATAACATCTCGCCAGGCCAgGCGTTTTGGGCTCCGAGTGACACAGGCGTGGTGTTTGTGGGCTGGTGGCATGAGCCCTTCAGACTGGGCCTCAAATACTCGCCCAACCGCAGGTCCTCCTTGTTCTATGTTGACCTGACTGGGGGACAGTGTGagcagctTTCATCAGGCTCCAGTGCTGTGTGTTCCCCCAAGCTCAGCCCAGACCAGTGCAGGATTATCTACCTGGAGTGTGCTGTCTACGGACCTCACCAGCAGTGTAGCAGGCTTTGCATGTATGACTGGTACACCAAGAGGACCTCTGTGGTGGTGGACGTGGTAAAGAGACCCAGGGAGGATGGCTTTGCCGGGATCTACAGctcgtctctgtctcctctgtgctggTCAGCTGACAGCCAGCGCATCCTGGTCTCCTGTCCACAGGGAAGCCGCAAGGATCTGCTGTTGGTGGAAACGACCACAGGGAGCGTCACCTCTCTGACATCAAAGTCTCCAGGGGGCAGCTGGTCATTGCTGACCATCGAGAGAAACCTGATGGTGGTCAGCTGGTCTTCCCCTAACTGCCCCCCCAGCCTGAGGGTGGGCTTCCTGCCACTGTGTGGTTCTCGTGAGGAGGTGGACTGGGTCGTGCTGGAGGACTCTCAGACCCAGCCAGATATCGATTGGCAGATCCTCAACTTCACCCCGCCCCCAGAGCAGGACAACAGCCAATACCCTGGTCTGGACTTTGACGCCCTCCTGCTGAAACCAAAGGATGTGAAGGAGGGAGTGAAACTGCCACTCATAGTCACCCCACATGgtggtcCTCACTCTGTGATTGTAGCAGACTGGCTGCTCTCCTCCTCAGTGCTGTGCAGGATGGGCTTTGCTATCCTACTGGTGAACTACCGCGGCTCTATAGGCTACGGCCAGGACAGTATCCTCTCTCTACCTGGTAATGTGGGCACTCAAGACGTCAAGGATGTTCAGTTTGCAGTGGAGAGTGTTCTGAGGGGCGGGGCGTTTGACGAGCAGAAGGTTGCGGTTGCCGGGGGTTCCCACGGCGGATTCGTGGCCTGTCATCTAATTGGCCAGTACCCAGAGTTCTACAAGGCCTGTGTGGCTCGGAACCCCGTCATCAACCTGGCCTCCATGATTGGGAGCACCGACATCCCAGACTGGTGTATGGTGGAGGCTGGCTATAACTACAGTACAGATTGCCTGCCTGACCCTGCAGTCTGGGAGCAGATGTTAAACAAGTCTCCTATCAAACATgtcaaacagGTGAAGACTCCTGTGTTGCTGACTCTGGGAGAGGATGATAAGCGTGTGCCCCCTAAGCAGGGGATTGAGTACTACAGAGCCTtgaaggcactacaagtcccagTGCGGTTGCTATGGTACCCTGAGAACAACCACTCCCTGTCCAAGGTGGACGCGGAGTCTGATGGCTTCATGAACATCGCTCTCTGGATGACCCAGCACCTGTCTCTGTGACGATACCATTAGCGATAGCATGCTAACCCTGTTGTTAGCTCTAGCATGCTAACAACAGGATGTTAATCTGTATAATAACGGCGTGAGGGTACTGTAGGCTACCTGCACTAAGTCATCTGTGATTAGATCATCTGCATCAGTTTATAGCTTTGGAATTACACCTTCTGAATGATGGCAAGTTCTTGTCCTATATGAAATATGAAACTGTTGAAACACATTGATTTTGCCTGTAATTTAGCAACACTAATCCTTATTTTCAACGTTTCTCCATGAAACGGTTTCACCTATGATTTAACAAGGGCCGTTCAAAAATGATCAAATACCTTTTTATTTAGAAAGATACTAAACAGCCGTATAGTTTCATCATCTAAGTTGTGATCATAATATGAAGAGAATGAAAGTACTTGAGCTAAACATTATGGACCAAGTAACGGTAACACCTGGTGAAAGGTCTCCACTACACATTCTACTCATTACCTTCATTCTGATGGTGCTTTCCAGGGTTGCAGATGCTTTATATTGATTGTAACAACCAGGGATCTTTCTCTAATGATTCTatcaataaaacatgttttggcTATAAAa

Function

GO: NA

KEGG:

id description
K01303 APEH; acylaminoacyl-peptidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1600630 lncRNA downstream 15885 65616811 ~ 65617245 (-) True G1401611
TU1600623 lncRNA downstream 28238 65604227 ~ 65604892 (-) False G1401606
TU1600624 lncRNA downstream 28238 65604227 ~ 65604892 (-) True G1401606
TU1600613 lncRNA downstream 56231 65576408 ~ 65576899 (-) True G1401596
TU1600603 lncRNA downstream 78321 65553392 ~ 65554809 (-) True G1401587
TU1600368 lncRNA upstream 4255 65648396 ~ 65653934 (-) True G1401376
TU1600371 lncRNA upstream 10476 65654617 ~ 65654855 (-) True G1401378
TU1600654 lncRNA upstream 61606 65705747 ~ 65705961 (-) True G1401632
TU1600378 lncRNA upstream 64484 65708625 ~ 65709149 (-) True G1401383
TU1600363 lncRNA upstream 76366 65720507 ~ 65754363 (-) False LOC110492562
NM_001129991.2 mRNA downstream 4637 65623175 ~ 65628493 (-) True tlr9
XM_036947561.1 mRNA downstream 12838 65131650 ~ 65620292 (-) False LOC110518541
XM_036947560.1 mRNA downstream 503363 65094789 ~ 65129767 (-) True wnt5a
XM_021566949.2 mRNA downstream 641659 64984262 ~ 64991471 (-) True LOC110492545
XM_021566948.2 mRNA downstream 944549 64682618 ~ 64688581 (-) True LOC110492544
XM_036947562.1 mRNA upstream 16139 65660280 ~ 65704778 (-) True cttnbp2nlb
XM_036947564.1 mRNA upstream 71570 65715711 ~ 65740776 (-) False LOC110492562
XM_036947563.1 mRNA upstream 76026 65720167 ~ 65740775 (-) False LOC110492562
XM_021566966.2 mRNA upstream 625496 66269637 ~ 66276483 (-) True ddx20
XM_036947568.1 mRNA upstream 636815 66280956 ~ 66296439 (-) True LOC110492566
TU1599433 other downstream 1184658 64445355 ~ 64448472 (-) True si:ch211-117c9.5
TU1599394 other downstream 1322674 64309883 ~ 64310456 (-) True G1400578
TU1599378 other downstream 1347137 64285628 ~ 64285993 (-) True G1400565
TU1599377 other downstream 1348583 64284207 ~ 64284547 (-) True G1400564
TU1599365 other downstream 1375697 64256926 ~ 64257433 (-) True G1400552
TU1600365 other upstream 76366 65720507 ~ 65754610 (-) True LOC110492562
TU1601912 other upstream 781410 66425551 ~ 66426322 (-) False G1402686
TU1601915 other upstream 781410 66425551 ~ 66426322 (-) True G1402686
TU1601943 other upstream 840760 66484901 ~ 66494667 (-) False G1402707
TU1602806 other upstream 1799280 67443421 ~ 67444179 (-) True G1403498

Expression Profile