RNA id: XM_036947564.1


Basic Information

Item Value
RNA id XM_036947564.1
length 2190
RNA type mRNA
GC content 0.49
exon number 14
gene id LOC110492562
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 65715711 ~ 65754610 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agggcttccaccatgcctttgccattttaatgtagtcaaagTACTCATCTGGTGGGGATTTCTACATGTTGtagcctcaatggtgctgcccacaGTGTCATAGAAGCTATAATGGCACATATATAAatatgagtcctctatctatctctattctctctcactctctgcaaaGAGTCGCCCGTTAACCCTCAAACTACCGAATAGCCCTTTAAAAAGGTGGAAGTAAAATAATTACACCATTCCTTTGTGGACCGCCATAATAttacagaagaagaagagagaattaCAGGTCGGTCAGAGCCGTCGGTCAGAGTCAAAAGCACAACAAAGCGGAGACACGATGTGGAACTTTCCTTCGTTCTCCACAGAGACATGGACTCTGGTAGCGACACTATTTGCTCTCTTCATGTGGTATGGGTATGCACCTTATGGATTCTTCAAGAAACTCGGCATCCAGGGACCTAAACCTCTCCCCTTCATAGGGACGTTTTTAGAGTACAAAAGGGGTTTCTTCATATTTGACAATGCCTGTTACCAGAAGTACGGCGATGTGtggggGGTATTTGATGGCAGACTGCCCATAATGGGTGTGATGGACACAGCCATGATCAAAACCATCCTGGTGAAGGAATGTTACTCTGTGTTTACCAACAGACGGGACTTTGGGTTGAACGGGGAGCTCCACGACGCTGTAACAACTGTAGAAGACGATGAGTGGAAGAGAATCCGcagcactctgtctccctccttcaccAGTGGACGACTCAAAGATATGTTCATGATAATGACTCAACACTCCAGAAACCTGGTGAAGTTTCTGCAGAAGAAGGTAGACACTGACGAGGTCCTGGAAGTTAAAGAaATCTTTGGGGCCTACAGTATGGACGTGGTGGCAAGTAGCGCGTTCAGTGTTGACATTGATTCTATCAACCAACCCAACGATCCCTTAGTTGTCAACATAAAGAAACTACTCAAATTCAACCTGTTAAATCCTCTCCTAATCTTAGTAGTGTTGTTCCCGTTTATGCGTCCGCTCCTGGAAAAGTGTAATGTCTCTTTCCTACCTGCTGGTGCTATGAAATTCTTCTATTCCTTCCTGAGGAAGATCAAAGCAGAGAGGAGCAAGAATGTACACAATACCAGAGTGGACTTAATGCAGCTGATGGTGGACTCTCAGATCCCACAGGACCACAGGTCCAAGGAGGTTGCACACAAAGggCTGACGGACCATGAGATCCTGTCCCAGGCGTTGACATACATCTTTGGGGGCTATGAGACCAGCAGCAGCACACTGGGTTTCCTATCCTACAACCTGGCAACAAACCCTGACGTCCAGGCTGCCCTGCAGGATGAGATCGACCAGATCTTCCCCGACAAGgcTCCACCCACCTATGAAGGGCTGATGCAGATGGAATATCTGGACATGGTCATCAACGAGACCTTGCGGGTGTATCCCATCATCAGCCGGCTAGAGAGGGTTGCCAAGACGACCGTGGAGGTGAATGGTGTGACCATCCCCAAGGGAACTGTTGTCATGATCCCAATCATGGTCCTTCACCACCACCCAACACACTGGCCCAAACCTGAAGTCTTCCGACCAGAGAGGTTCAGtaaggagaacagagagaacattgATCCCTACACCTTCCTTCCGTTTGGGATGGGGCCCAGGAACTGTATCGGCATGAGATTCGCCCTCCAGACCATTAAGCTGGTGATAGTAGAGATCCTCCAGAGGTTCAGTTTTGTCACCTGCAAGGAGACAGAAGTTCCTCTGGAGCTGTTTGACAACGGCTTCATCGCCCCAACGAAGCCCATCAAGCTGAAGCTGATCCCCCGTGTTGTGGCCCCCAGCCAGGATTGAGAGGAGAGGCACAGaggctacccaaccagccagtcaggttTCAAACTCCCACAGTCactcaatgcacacacacacgcacacacacacacgcacacacacacgcgcgcacacacacgcgcgcacacacacacgctcacaagcacacacacgcacacacgggcacacacacacacacagtggcgaCCCATCATCCAGGGTGTGTGGGGCTCTGTTTTTCGCCCCACCTGTTAACAAAAAAACAAGTATGATgatggcattaatacatgtcacatttcagtttgtaaacaatgtaaaaataataataattcagttaataaagccgcata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1600378 lncRNA downstream 6562 65708625 ~ 65709149 (-) True G1401383
TU1600654 lncRNA downstream 9750 65705747 ~ 65705961 (-) True G1401632
TU1600371 lncRNA downstream 60856 65654617 ~ 65654855 (-) True G1401378
TU1600368 lncRNA downstream 61777 65648396 ~ 65653934 (-) True G1401376
TU1600630 lncRNA downstream 98466 65616811 ~ 65617245 (-) True G1401611
TU1600691 lncRNA upstream 104561 65845337 ~ 65847509 (-) True G1401667
TU1600719 lncRNA upstream 142450 65883226 ~ 65883433 (-) True G1401692
TU1600729 lncRNA upstream 162783 65903559 ~ 65903883 (-) True G1401702
TU1600744 lncRNA upstream 192122 65932898 ~ 65933267 (-) True G1401717
TU1601620 lncRNA upstream 228789 65969565 ~ 65969914 (-) True G1402442
XM_036947562.1 mRNA downstream 10933 65660280 ~ 65704778 (-) True cttnbp2nlb
XM_021566961.2 mRNA downstream 71570 65633130 ~ 65644141 (-) False apeh
XM_021566962.2 mRNA downstream 71570 65633130 ~ 65644141 (-) True apeh
NM_001129991.2 mRNA downstream 87218 65623175 ~ 65628493 (-) True tlr9
XM_036947561.1 mRNA downstream 95419 65131650 ~ 65620292 (-) False LOC110518541
XM_021566966.2 mRNA upstream 528861 66269637 ~ 66276483 (-) True ddx20
XM_036947568.1 mRNA upstream 540180 66280956 ~ 66296439 (-) True LOC110492566
XM_021566970.2 mRNA upstream 562813 66303589 ~ 66308067 (-) True b4galt3
XM_036947569.1 mRNA upstream 579646 66320422 ~ 66332763 (-) False bgnb
XM_036947570.1 mRNA upstream 579646 66320422 ~ 66345643 (-) True bgnb
TU1600638 other downstream 79339 65635482 ~ 65636372 (-) True G1401617
TU1599433 other downstream 1267239 64445355 ~ 64448472 (-) True si:ch211-117c9.5
TU1599394 other downstream 1405255 64309883 ~ 64310456 (-) True G1400578
TU1599378 other downstream 1429718 64285628 ~ 64285993 (-) True G1400565
TU1599377 other downstream 1431164 64284207 ~ 64284547 (-) True G1400564
TU1601912 other upstream 684775 66425551 ~ 66426322 (-) False G1402686
TU1601915 other upstream 684775 66425551 ~ 66426322 (-) True G1402686
TU1601943 other upstream 744125 66484901 ~ 66494667 (-) False G1402707
TU1602806 other upstream 1702645 67443421 ~ 67444179 (-) True G1403498
TU1604092 other upstream 3050413 68791189 ~ 68795025 (-) True LOC118939478

Expression Profile