RNA id: XM_036947571.1


Basic Information

Item Value
RNA id XM_036947571.1
length 2955
RNA type mRNA
GC content 0.51
exon number 10
gene id si:dkey-32e6.6
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 66382003 ~ 66421064 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctctctctccacccaggtGTTTGTTAGTTTAAGGCAATGAGGACAGGActagagagggcaggagaggacagaaggggaaaggagaggagggcagaggacaggagaggaggggtgatctGTGTTTTCTGGAGAGATGAACGAAGGCCTTTGTTTAGAATGTGAGAAcatacttttttcccctctctctcactctccccacctctctctctcctctctgtgcactcctccttctcctcttccatcccctctTTTCTCACTCTTTATCCATTCTCATCTCTCACTTTTAGTTCTGCTGGTACAGTATCCTCTGGGGAGTGTGCTTAAGGAGTCCGGAGTCTCTTGGGAGTTCTGTTGTCCACGTCTCCTCTTCTGCTTCGCAGGTTTACTCTTTGCCTGATTTTTGCTTCTGCCGGTGCTGCTATATTCAGGAGGATCTTTGTTACTTCTCTTTACTCCAAGACTGGACTGGAGGTGGTTTCAGAAACACAGCCCAGGTCTCAAAGTTTTTCCTTGTCTATAGTCATTTTTTTCTTGGACTAACTATCCCAGTTAGTTTGTCTTGGACTATCCCAGTTAGTTTGTCTTGGACTGGGTTTTGGATTTGACCAGCCGTGGGCTCAGATCCAGAAACCTGACGTGGCGATGCTGAGATTTTgggttctgtgtctgtgtgtgagtgttctCAGTGTAGGCGTTCTAACTCTGATCCCCCAAAAACACGAGATAGAAAATGAGGTACAACACGATGTGGAACATGTGCATGGAACATGGACCATGGAACATGAAGCGAGGGAACCCGATAAAATCTATGCAGAGACTCTAGCAACCCACCAACCTGCCACATACACTCCTATTATGGACACACATGCCACAGTCCCAACTCTGACAGACATACCTCTTACAGAAACAACTGTGATAGGTACAGCTATTACGGAGTCAGACGTACCTGTGGTCGCCACATGTCTTTCATCAGTGTCTCTCTCAGCCCTACCCCTCACCTCATTACCGAATGATGAAGAAGGCAGGGATCAGGAAAAAGGCAGAGAGGACAAGAATCCAAGaattgaagaggaggaggagaaggggagagtgagggatgagcagatgagaaaggacagagagatggaggcgagcagagggaggagaggagtgacgGGAAGGAGACATGCAGCAACTGTAGAGGCCACTGCGTACAGAATGGCAGGTCTGGGGCGCCCCCTACCTGGCTGGAAGAAGCGAGGTACAAATGGGGGAGCTGAACAGGAAGGTGTTCTCAGGACCATACTAAAGGAACTACACAGTGATAAGGACAGACTAATGGACACAGAGaaggcagaggaagaggaagatgaggaggaagatgaagatgaagacgatgaagaggaagatgattctgaagaggaggaagaggaggaggaggaagaggaagaggaggaggaagaagaggggacagagtctcccaccaaTCAGACAGTAGCAAGGACCAGCTTCACAGAGTCTCTCCCAGGGACGTGTCAAACGTCTAACGGACAAATAAGCTGCAGGGGTAATGGCATGAATCACCTCCCAATCATCACCGACCTTGGGGTCACGACCCTGGACCTGGCAGAGAACAACATCAGTCTTATTGCCTCGCGGGGTTTCTCTGGTCTTCCCAACCTGGAGAGTATAGATCTGAGCAAAAACCGACTGGATGACGACTCACTCAGCCATCACCTCTTCTCTAATCTGACCCGGCTGAGGAGGCTCAACCTCGATGATAACCAGCTGACACGGATCCCCCTGCTGCCACCTTCACTGGGGGAGCTCACGATGAATGGCAACAAGATCACCAGACTCACCCCTTACAGCTTCAAAGgtcTGTTCCATCTGTTGTCTCTGGAGCTAGAGGAGAACCTTTTCCATGACGGCAACGTGTCCCCTTTGACCTTCAAGCCGCTGAAGAGGGTCCAGTACCTGTGCTTGGACATGAACAGGTTCCGCTCCCTCCCCCTCGGCCTGCCCCGCTCCCTACAGgagctgaGGATGCGTGATAACCAGTTACAGGAGGTACCAGAGGGGGTTCTGAGTGAATTGGCCAAACTGAGAGTTTTAGACCTTAGTCACAACCTGCTGCATGAGGGCAGCATCTCAGACCGGGCCTGGGTCAAACTAACttctCTTGAAGCCTTGGACCTCTCTCATAACAGCCTCACTTCAGTCCCCCTCTACCTACCCCGCCCTCTGCGTCAGCTGACCCTGCAACACAACTCCATTGGTCGAATCCCTGCGTATGTCTTTGGCCACCTGCGCCCCGGCCTAGAGTCCCTCCGTCTATCCCACAATGCACTAGGGGACGAAGGAGTGCAAGGAGTTTCTTTTGTGGGCATGTACCGATCGCTTGTTGAGCTCCTATTGGACAATAACCGTCTGGGGGCGGTGCCTCGCAGCGTGTGGCAGTTTAGGAACCTGCAGGTGCTGAGGCTCGACTACAACCAAATCAGGTCTGTGGCGGTGGGGTCGGTGTGTCACTCTCGTGTGGCGGTGCGTTCGGCCCTGGCCTCTCTCCACCTGGAGAACAACCTTATAGAGGAAGACATCCCCTCCACTACCTTCAGCTGTATTCAAGACCCTAGTAGTGTGGTCACACAGCCCCAGGAACACATACACGAGGTGTAGACCAGCTTCTCCATGTATAGATGTTCCACTGAACCATCATTAAACCTCCCTATTTCCCCACCTCCATTTCTTCACCAatcagctgttttgcaaggaggaatgggaaaaaatgtcagtctctcgatgtgcaaaactgatagagacatacctcaagcgacttacagcagtaatcgcagcaaaaggtggcgctacaaagtattaacttaagggggctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaataaatgtcgttccacttca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1601865 lncRNA downstream 5163 66359441 ~ 66376840 (-) True G1402659
TU1601794 lncRNA downstream 64287 66234253 ~ 66317716 (-) True G1402604
TU1601814 lncRNA downstream 80486 66299646 ~ 66301517 (-) True G1402620
TU1601778 lncRNA downstream 175763 66205628 ~ 66206240 (-) True G1402588
TU1601775 lncRNA downstream 180500 66201159 ~ 66201503 (-) True G1402585
TU1601888 lncRNA upstream 21150 66442214 ~ 66447716 (-) False cdk16
TU1601872 lncRNA upstream 27680 66448744 ~ 66451848 (-) True cdk16
TU1601940 lncRNA upstream 69593 66490657 ~ 66494667 (-) False G1402707
TU1601945 lncRNA upstream 69593 66490657 ~ 66494667 (-) True G1402707
TU1601969 lncRNA upstream 103662 66524726 ~ 66525092 (-) True G1402728
XM_036947570.1 mRNA downstream 36360 66320422 ~ 66345643 (-) True bgnb
XM_036947569.1 mRNA downstream 49240 66320422 ~ 66332763 (-) False bgnb
XM_021566970.2 mRNA downstream 73936 66303589 ~ 66308067 (-) True b4galt3
XM_036947568.1 mRNA downstream 85564 66280956 ~ 66296439 (-) True LOC110492566
XM_021566966.2 mRNA downstream 105520 66269637 ~ 66276483 (-) True ddx20
XM_021566973.2 mRNA upstream 12884 66433948 ~ 66436902 (-) True tsr2
XM_036947579.1 mRNA upstream 30028 66451092 ~ 66470642 (-) False cdk16
XR_005036583.1 mRNA upstream 30028 66451092 ~ 66470642 (-) False cdk16
XR_005036584.1 mRNA upstream 30028 66451092 ~ 66470642 (-) False cdk16
XR_005036585.1 mRNA upstream 30028 66451092 ~ 66470642 (-) False cdk16
TU1600365 other downstream 627393 65720507 ~ 65754610 (-) True LOC110492562
TU1600638 other downstream 745631 65635482 ~ 65636372 (-) True G1401617
TU1599433 other downstream 1933531 64445355 ~ 64448472 (-) True si:ch211-117c9.5
TU1599394 other downstream 2071547 64309883 ~ 64310456 (-) True G1400578
TU1599378 other downstream 2096010 64285628 ~ 64285993 (-) True G1400565
TU1601912 other upstream 4487 66425551 ~ 66426322 (-) False G1402686
TU1601915 other upstream 4487 66425551 ~ 66426322 (-) True G1402686
TU1601943 other upstream 63837 66484901 ~ 66494667 (-) False G1402707
TU1602806 other upstream 1022357 67443421 ~ 67444179 (-) True G1403498
TU1604092 other upstream 2370125 68791189 ~ 68795025 (-) True LOC118939478

Expression Profile