RNA id: XR_005036588.1


Basic Information

Item Value
RNA id XR_005036588.1
length 7988
RNA type mRNA
GC content 0.43
exon number 16
gene id cdk16
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 66442214 ~ 66479142 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctatgatgaaaatgacaggcctcatctttttaagtgggaggacttgcacaattggtggctgactaaatactttttttgccccactgtacctataCAATACAATGACTCCAGTATAGGCTGACCCCTACCAAGTTACCTATACAATACAACTGTAGGATACTTCACCCCTGAATGATTATACTGCAACAACCAATATGGCAGTATCTTTGACCAATTAGGCCTAATTGTCAAAGAAGTAATAACAGGTGAAACTGCACACAGCTTTGTAGTTCAATGTGCAGAATGTTTAGTTTAGTTTGGACCATCTTTATGCTCAAGGCGGGAGTTATTTTATCCTTCTTTCCATAATGGTGATATGAAAAACCAAAATGGTGTGATGAAAAGCTCTCAAATTGACTGATTCAACTGTTTTCTTACCAGAGACGTAATGTGTCGTCTCCAAATGTTTACAACTGTACTCATCAATATTTAAATTAGGTCTGCTGTAAAAGGTTacgttttctttctttcttatacAAGCATGCCACACATGACTGGGTGACCTGAAACCAATGATGACTCAGTATCATTTGTGGGAGTACTGTACATGCAACAGAGTAGTGTCACTCTTGTGCAAAGCTCTGCAGTGCAAACATTACACCCTTTTATGGCTTCTCTGCTACTTGGGATACATGGTTTAGGGTAGTGGTAGGTCTTACCTTACCATCACTCCACAGtgtgtgttcttaaattcaatctggagtgcttAGAGTGCgctcgtaaattcatcagttattctgcgctctggcacactcggacgagagtgctctgaaattggagtagatattgccagagtgaatttacgaacgcacccacaGATTCACACACAAAATAGGCAATAGCTACACTTTTCCAAATCCTATATGGCTCCACCCTGAAGGATCTGGTGATGATGGGGTGGGTGTTTGTGTGATAACGGTGCTTCTGGTTCCTGCTTGCTATTCTTAATTTGATCCGACGCATGTCTCTTCCAGCATGGCTCTCTGTGTTCTAATACTGGCTGTATTGATGCTGTCTCAGGAGGTTGCAATCAAACAACGTCAGTCTATTCTCCTCAACTTGACTCCCTGGTGGGAAAAAAAAATTAAGAATTTGTGCACTAAAACCAATCAACattttgaatttaaaaaaaatcctttgAAAAACTGTTTAGAATGAGAAATGAATTTGGCTTTGTGAAGTAATGAACAAAGTGCTGTTGTGTAATATAATTTACCATCAACTGTGATTATTAGAGGCAGTAAGCATGGGCCACATCTGGCCTGTACAATGCAATGAAACCAGTTCATGCAGCTCAGAAACTTCTCAGTAAACCCTGTTACTAATACTGAAGGTTTTCCTTGTCAATTGACCCCATATTTTTTTTGTCTTCCAGTGTGTATTAACCTCTTTTGGAAAGTGAATCGCATGCTCTGAAAGATGGACATTTGTACGTGTTTCCCCCGGTTCATTTGGTTAATCCTTTAATTTCAAGTTACCGGCTCTTTTCTTTCCTTCCCTGTTTCTTCTCATCTTAACCACCATTACTCTGTGTCTTCTCATCTTAACCACCATTACTCTGTTCTTCTCTACCAAATGTTACTGCCTACTTCTGTAACATTTCCACTTTTCTCCCCAATACTACATCTTCATCCATGacttttcatttgtttttctgtttttctcTTCTTTCTACACCCCTTCCCCCTTTTTGTTGTCCTGTCTTCATCCCAATCATGATCTGTTTCCTCTTTCATTTGCTTTGAACCCCTGTCCCCGATCATACCATGCCCTGCCGTGCCCTGTGTCCCCCGTCCACCTcacaaccaccacctccacctgcATTGTCCTTCGATGACTCCCACCCGTACCCCATTCCTCCctcctgtgtgtgtctcccctgtgtctctgcctccccacccttctctctcccagaGACCATGTCAGTGCGGGGCAGTGGCACTGGCAGTTTGCGGGGTTCAGTGCGAGGCAGTGGTGGTGGAGGCTCGTTCAGCATGCACTCCCTGCTCCAGTCGTACGGCTCCGCCCTGCGCCGACCACACAGCCTGGGCCGCAGCCTCAGCTCCTATCTCAACCACACCACACGCCTGGAGATAGTTCATGAAGATGTGAAGATCGGCTCTGATGGGGAGAGTGACCAGGTCTCGGCCACCTCTTCTGATGAAGTACACAGTCCTGTCAGGGTCCGCCTCAGGAACAACTCTGTACGCAAGATATCCACCGAgGATATAAACAAGCGGTTGTCCTTGCCTGCGGACATCCGTCTCCCAGATGGCTACCTGGAGAAGTTCTGTCTGAACAGTCCTCTTTTTGACAAACCTCTGAGCCGGAGGCTAAGGAGAGTCTCCCTGTCCGAGATTGGCTTTGGGAAGCTGGAGACCTATGTGAAGCTGGATAAGCTAGGAGAGGGAACCTATGCCACGGTATACAAAGGGCGCAGCAAGCTGACTGACAACCTGGTGGCTCTGAAAGAGATCCGATTGGAGCATGAGGAGGGGGCTCCCTGCACTGCCATCAGAGAAGtgtcTCTGCTGAAGGATCTGAAACACGCGAACATAGTGACCCTCCATGACATCATCCACACGCAGAAGTCTCTCACGCTGGTCTTTGAGTACCTGGATAAAGACCTTAAGCAGTATCTGGAGGATTGTGGCAACTCTATCCACATGCACAATGTGAAGctcttccTGTTCCAGCTGCTGCGTGGCCTCAACTACTGCCACCGCCGCAAAGTCCTCCACAGAGACCTCAAACCCCAGAACCTGCTCATCAACGACCGCGGAGAGCTCAAACTGGCTGACTTTGGCCTGGCCCGGGCTAAGTCCATTCCCACCAAGACATACTCCAACGAGGTGGTGACGCTATGGTACCGTCCCCCAGACATCCTCCTAGGAAGCACTGACTACTCAACGCAGATAGATATGTGGGGAGTGGGTTGTATCTTCTATGAGATGTCTACAGGCCGCCCCCTGTTTCCTGGTTCCACAGTGGAGGAGGAGCTGCACTTCATCTTTAAACTGCTAGGTACACCCAATGAGACATCCTGGCCTGGAATCACCTCCAATGAGGAATTCATCTCATACAACTACCCCCGGTACAGAGCCGACTGTCTACGGAATCACACACCAAGACTGGACAATGAAGGAGTGGAACTGCTGTCCAAACTGCTGCAGTTTGAGGGAAAGAAGCGCATCTCAGCAGAGGAGGCCATGAGGCATCTATACTTCCACAGTCTGGGAGACCGAGTCATCACACTGCCTGACTCTACATCAATATTTTCACTTCAAGACATTCAGCTGGAGAAGGAGCCCGGCTGTAGAAGTAGCTCCTTGTCTGACTCAGtgAACAGCATATCTCGACGACAGAGCCTGCTTTTCTgagtggagtgagacagagacggACGAACGAGAGGACGGGAAGCTGAGACATTTCTGTGTGCGATGAAGGGATACATATTCATCATCTTTATACCTTTTGAATTGTCATTGTTGGTCCATTTAGTGTTGAGAGGTTCACTAGCTGTTTACATGTAAGACGAGGCTGAGGAGGATACCTGTTTTTCTTCTGTGTTTGCTCTCAATATGCACTCTCTCCTCTATATAGAACAGTTTACTGTCACAGACACACTTTTACCATCACGTATACTGTAAATGCTGACAGGCAAAGAAAGCCTTACCATTTTTCCTTGTATAGCTAACTACTGTGATTTTTAGTTTACAGGCTGACATAATTGCAGCCCTGTATAATTACATTTAGACATGTCAGGACATTCTTTGAATGCAATAATCATCACCCGTACATTTTAATGGATTTGGACCAAAGTTTTCGACTCACTTAAATTATGCACAATGCTATTGTAATACCCCTAGCTAGAACCTTTCTATTTGTTATTGTATAATACCACAATGAAGGAATAATTTGAAAAATGACAAGGCTTGAATAAGTGATAAGTTGATTAGAGTTGTCTTCTAATTGAGGGGGGGAATAATACGGTGAGGCTGAAGTGTCTCACCTTGGTCTTCCACACCCCCATTTCCACCACAGCAAGGTATTACAGTCTAGCCCTCCCATTTCCACCACAGCAAGGTATTACAGTCTATCCCTCCCATTTCCACCACAGCAAGGTATTACAGTCTAGCCCTCCCATTTCCACCACAGCAAGGTATTACAGTCTATCCCTCCCATTTCCACCACAGCAAGGTATTAGTCTATCCCTCCCATTTCCACCACAGCAAGGTATTACAGTCTAGCCCTCCCATTTCCACCACAGCAAGGTATTAGTCTATCCCTCCCATTTCCACCACAGCAAGGTATTACAGTCTATCCCTCCCAGCTCCATCAATCCAAGGTATTACAGTCTAGCCCTCCCATTTCCACCACAGCAAGGTATTACAGTCTATCCCTCCCATTTCCACCACAGCAAGGTATTACAGTCTATCCCTCCCATTTCCACCACAGCAAGGTATTACAGTCTAGCCCTCCCATCTCCGTAATCATTGAAGGGTTAGTTTAGTACCAGGTAGATTAATCCCAACAGTGTCATGGTGGCATTTGGGGGAAATCCtcatgttgtatttatttatttattttcataatgCTGTGCTTGGCTGATATGGTACAATggtttgaaagaaaagcacttctGTTCTATTTTCACACAACGTTTTGCAGTTCTCTGAGGAATCCATAGCACTTACAGGAATTCTCCTCATTCTTGCAGGAATTCTGGAATTTGGGGAACCGTTGTACCAAAAACCTGGAGATGGCGTTCTCTTTATTGATTATATAGACATGCATCCAATACAAATTGAGCTTCCACGGTGAAACATCACAACCCTGATAGGTTTAATGACTCTTTAGGGCACAGGGTACAGTATTGTTGGGTGTAATGTAATTGTGTTTACACATCTACCTGTTTGGAGTGAAAGAGACAGTCTGCAAATGTCCCCACTATGTACAGGGTGATGTGTGGTCATCATtctgaggagagtgagagagtgcaCCAGACACAGTGTCACTACTTTTACACCGCCTGCTGATGTAGTTAGCCCACCTATTAACCACGGCTGTTGTTCtatagcagtggttcccaaccttttacCCATGTACaatttaccagtaggcctatggtctcatgagtcttctcaagtaccccctgtggataggccacgTTCCCgtggttgggaaacactgttctaAAGCACTTCCGTATGTGGAATCTGTGAAAACCAAAGTGAACATTGCATAAAACTGTCATCTGACATTTCTGGCTCGTCGTTTTGAATGGGGATAGATGATGTGTTTCAAACCTCAAATAACCAAAGTATACATTTTTGGATTGAGGTGGTAACGTGGAGAGAAATGCAGTTGGTTATGAATTCTCACCATCTCAACCATTGGGTTAGTTTGGTGGGTTGGGGTGTGATCCTAGCAGCGAGATGTTGTGAACTTAGTAAGTGTGAATGAGTGAGCgtgtgctgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtatgaaagAGCCAGAGTGAGAGAGTCAGAGCAGAGGATATGTGTCGTGAAGCACGGCAATGTTATATTGTGGAAAAAGAATATGGTATGTTGTAAATAACCTTAGATTATTTTACGGAACCGAGCAGAGGACTGTGCAATGAGATGAGGATACTCTTCTCATTATGTCATTTTGAAGATAAGAATATAGTTTTCTTACGATGATCATTGATTATATTGTTATTGTGCTTTTAATGAGAAAAGGTTTATTTGTTCATAGAATACATAATCAGTGTAGATATTTGCATTTTATGTTTATAATTTGTTTTCTCTGATGGTGAAAGGGGCTCTTCCATATACATTGTCAGAAGAAGCATGGATATGTTGCCATGGAAGGGCTAATAGGTTGGTCGTGAAGTCGCCTCTTGTCCCATTTTATATTTCGCAATAACTGTTGTACTACGCAATAACAAGTTGTACAGTACGTGATCCCTGTCCAAATTTACCAGTGGATTGAATACTTTATATCTAACACAAAAACAATGAAGTCACAACTTTAAGTAGAACAAAAAAAAGATACTGGAGACTGTTTTATTGCCCATTGTCACTTTTACATTTGGATTCAAAGAGTGAGATTTTGATATCACTGTTGACAAAGCGCTTCGTTTTTCTTTTATTGAGCCAAGAAACAAGAAACTTCTTGTAGTTTTCAGTATTGATAAAACTGTTTGACATTTCTTTATAAAGCAAAACAAGTTCAATTCTAAGGTGTAGTGTATGTGCCGAGGTTAAGACCATGTTCTTCAGTTGTCAAGGAGAGTTGGATTACAGATTGGACAATGCAATGAGACTTGGTTTTGAAGCAGCTTTACCATACAGCCCAGCATATCTAATGGGCATGTGATGTGTTGATGAGGTTGAAAAGGTATGAACATGTACTgtaaactggtgtgtgtgtgtgtgtgtacatatgtagGTACTGTAAAACATACCATTTGAAAAGGAATTTAAACAAACCCAAGCAATACATTTGGCAAATGTCTGATGCAGAAGCCAAACAAGTTGGTGCTCTGATAGCATTTAGGAATGGCATGTTATGTGGAGGCTACAGTACACAGCAATGTGATAGGATGTTTTTCCTATAGTTGGTTGGGAAAACTGGGCCATATTCAGTAGGTATAACACTACAGGAAGTTGCAGATATAAATGGAATGTAGCCTATGGAGCAACCAACACATTAGACTGGCATTTTTCTCTGACACGTTCTTCATGGCTGCACATCTGAATATGTTTTAGATCTGTGTGTATATTGTATGAATATGTAAATGCTCAAGATGTTTTGTGAAGAGAATGTTTTGTTTGATAGGCTCCGTCCACTGTGTGTAAAAACTGGATTTGGATATTCAAAAGCTCTTTGGATTGCGGCAATAGTTATTATTTTTCCCATCTGAGCAGCGGTTTGGAAAGGACTACAGTGTAAATTGTCAAGTGAAATACCATGCCATCATGAACCTGTGGTTATTATATCGGTGGCACACTGAAATACCACACCATCATGAACCTGTGGTTATTATATCGGTGACACACTGAAATACCACGCCATCATGAACCTGTGGTTATTATATCGGTGACACACTGAAATACCACACCATGAACCTGTGGTTATTATATCGGTGACGCACTGAAATACCACACCATCATGAACCTGTGGTTATTATATCGGTGACACACTGAAATACCACACCATGAACCTGTGGTTATTATATCGGTGGCACACTGAAATACCACACCATGAACCTGTGGTTATTATATCGGTGACACACTGAAATACCACACCATCATGAACCTGTGGTTATTATATCGGTGACACACTGAAATACCACACCATCATGAACCTGTGGTTATTATATCGGTGACACACTGAAATACCACACCATGAACCTGTGGTTATTATATCGGTGACACACTGAAATACCACACCATGAACCTGTGGTTATTATATCGGTGACGCACTGAAATACCACACCATGAACCTGTGGTTATTATATCGGTGACACACTGAAATACCACACCATCATGAACCTGTGGTTATTATATCGGTGACACACTGAAATACCACACCATGAACCTGTGGTTATTATATCGGTGGCACACTGAAATACCACACCATGAACCTGTGGTTATTATATCGGTGACACACTGAAATACCACACCATCATGAACCTGTGGTTATTATATCGGTGACACACTGAAATACCACACCATGAACCTGTGGTTATTATATCGGTGACACACTGAAATACCACACCATGAACCTGTGGTTATTATATTGGTGACACACTGAAATACCACACCATCATGAACCTGTGGTTATTATATCGGTGACACACTGAAATACCACACCATCATGAACCTGTGGTTATTATATCGGTGACACACTGAAATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1601888 lncRNA downstream 3376 66442214 ~ 66447716 (-) False cdk16
TU1601865 lncRNA downstream 74252 66359441 ~ 66376840 (-) True G1402659
TU1601794 lncRNA downstream 133376 66234253 ~ 66317716 (-) True G1402604
TU1601814 lncRNA downstream 149575 66299646 ~ 66301517 (-) True G1402620
TU1601778 lncRNA downstream 244852 66205628 ~ 66206240 (-) True G1402588
TU1601940 lncRNA upstream 20015 66490657 ~ 66494667 (-) False G1402707
TU1601945 lncRNA upstream 20015 66490657 ~ 66494667 (-) True G1402707
TU1601969 lncRNA upstream 54084 66524726 ~ 66525092 (-) True G1402728
TU1601972 lncRNA upstream 60714 66531356 ~ 66531965 (-) True G1402731
TU1601973 lncRNA upstream 62006 66532648 ~ 66533823 (-) True G1402732
XM_021566973.2 mRNA downstream 14190 66433948 ~ 66436902 (-) True tsr2
XM_036947571.1 mRNA downstream 30028 66382003 ~ 66421064 (-) True si:dkey-32e6.6
XM_036947572.1 mRNA downstream 30030 66382003 ~ 66421062 (-) False si:dkey-32e6.6
XM_036947570.1 mRNA downstream 105449 66320422 ~ 66345643 (-) True bgnb
XM_036947569.1 mRNA downstream 118329 66320422 ~ 66332763 (-) False bgnb
NM_001165126.2 mRNA upstream 31390 66502032 ~ 66503955 (-) True abt1
XM_021566982.2 mRNA upstream 112461 66583103 ~ 66586795 (-) False zgc:86609
XM_021566981.2 mRNA upstream 112461 66583103 ~ 66587055 (-) True zgc:86609
XR_005036590.1 mRNA upstream 227996 66698638 ~ 66706256 (-) False LOC118939570
XM_021566996.2 mRNA upstream 267684 66738326 ~ 66767036 (-) True slc6a8
TU1601912 other downstream 24770 66425551 ~ 66426322 (-) False G1402686
TU1601915 other downstream 24770 66425551 ~ 66426322 (-) True G1402686
TU1600365 other downstream 696482 65720507 ~ 65754610 (-) True LOC110492562
TU1600638 other downstream 814720 65635482 ~ 65636372 (-) True G1401617
TU1599433 other downstream 2002620 64445355 ~ 64448472 (-) True si:ch211-117c9.5
TU1601943 other upstream 14259 66484901 ~ 66494667 (-) False G1402707
TU1602806 other upstream 972779 67443421 ~ 67444179 (-) True G1403498
TU1604092 other upstream 2320547 68791189 ~ 68795025 (-) True LOC118939478
TU1604570 other upstream 2732644 69203286 ~ 69207158 (-) True G1404974
TU1604630 other upstream 2807185 69277827 ~ 69280359 (-) True G1405016

Expression Profile