RNA id: XM_021566981.2


Basic Information

Item Value
RNA id XM_021566981.2
length 1983
RNA type mRNA
GC content 0.40
exon number 9
gene id zgc:86609
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 66583103 ~ 66587055 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGGACAACGACTCTCCCATTGCTAGGGTGGAGAGACATGTAGTATCTTGTCAGTTTATCCATCATTTTTTTTATTCAAtggggacgtcccaaggatccctaATAGCACGCACCGTTTTTCGACAGCTGAAACTACATTAATTAGATCATTAATTGGTTGAACTAAAatgtattattgattatttaaatGTGGATGCTTTCCATCTTCAGAAAATACATAATATCATAATGCATAATGACCGTATTTGATCATACGTCAGGGGTCAAAGCGTTATGGAGTTCAAAGGTCTGAAGAATGAGCGCTCGCTTCTCTGATGGTCGGAGAATTGGACTTAAAAAGGAATAGTCGTGTAGGTACGCTAACCAGTTAAACAACATGGCTGAGTTGCTTCTGGATTCAAGTATCCGAATATGGGTGGTTTTACCAATTGTATTGATTACATTTTGCGTTGGAATTATCCGTCACTATGTCACCCAACTCCTGCAAAGTGACAAAAAAGTTGATCTGGAACAGGTGTCAGACAGCCAAGTCCTTCTGCGTAGCCGCATCTTAAGAGAAAATGGAAAATATATCCCTAAACAAtcATTTAACATGCGGAAGCAATATTTCAATGATGCGGAGACTGGGTTCTTCAAGAAGGTCAAGCGAAAGGTGACTCCCAAAAACCCAATGACTGATACCAGCATGCTGACTGACATGATGAAGGGAAATCTGACCAATGTACTTCCCATGATTGTGATTGGAGGATGGATCAACTGGGCATTCTCTGGCTTTGTCATCACTAAGGTTCCCTTTCCTCTGACATTGAGATTCAAACCAATGCTGCAGCGTGGAATTGAACTGTTGTCTCTTGATGCATCCTGGGTGAGCTCAGCCTCTTGGTATTTCCTTAATGTTTTTGGACTGAGGAGTATGTACAGCCTCATTCTTGGACAGGACAATGCTGCGGATCAGTCGAGGATCATGCAGGATCAGATGACTGGCGCTGCCATGGCCATGCCGCCTGATCCTAACAAGGCCTTTAAGAGTGAATGGGAGGCGTTGGAGATTGTGGAGCACAAATGGGCCCTGGAGAACGTTGAGGAGGAGCTGATGTCTCGAGATCTGAACTTTTGTGGAATCTTCAGTCAAGAGATAAAAGCCACAATGTTCTAATGAGGTTATTGACTCAACTGCTGCTGTAGAGGCAGCCAGTTTCTGTGATACAGTGTATCATCAGGGTTCTCTGaggcagttgtaaaaaaaaatatttaaaaaatgtcttAAATATGATTGTGatacctaaacagtatatttttgGCTCAAGgcaataaaaaaacaacaatagaAAGGCAAACATATTTAACCTCTGACATTAATTTAATGACAACTAATGCCTATTTGTTTCGTTGTGTGAAAATAGTGTAAGTTGAATGTAAATGATGCATGTTCTCAGCTTAGTTTTATTATTGCCTTGCAATTTTTCACTATTACGCCTTACTGTTAACTGATTTCATTGTGCATTCAAATATCAGCGCATCACACAGATGTATTATTTGTAGAAAATAGTTTGGTTGTGTTGATTAATTTCAGACATGCTTCTCTGCACATTTCTGAAATGGCTtgttctctttgtgtgtgtgtgaaccaagGCCTCATCTCTGATATTGTCTGCATTGCTTGTGTTTGTTTAAGTTGTAAGGTTCTTAGgagtaaaaaaaaagttttttttcttcttctattcTGTCTCTTTCAGAGGTGAACTGGTGTTACCTGATTAGCTCCCAATACCATTTAAGCATTTTTAAACATACAAAATCTTGCCAAAACATCCGCTTTGGCTGTACTGTATAATTGAATGCGATGTAGCCTGTCCATTGGAGCTGATGTTTTTTGTATCTGTGCCAGAAGAGGTGGTGATATGGGGAGGTGAGGATGTATTGGAAATATACCATCTGCTTGGCTGTGGAGATTTAGAAATAAATTATCTGCAGATCTGAAG

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K23564 EMC3, TMEM111; ER membrane protein complex subunit 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1601987 lncRNA downstream 26373 66556131 ~ 66556730 (-) True G1402746
TU1601984 lncRNA downstream 31953 66550923 ~ 66551150 (-) True G1402743
TU1601983 lncRNA downstream 32487 66550282 ~ 66550616 (-) True G1402742
TU1601982 lncRNA downstream 33391 66549450 ~ 66549712 (-) True G1402741
TU1601980 lncRNA downstream 35665 66547225 ~ 66547438 (-) True G1402739
TU1602025 lncRNA upstream 2242 66589297 ~ 66589631 (-) True G1402782
TU1602026 lncRNA upstream 4090 66591145 ~ 66591348 (-) True G1402783
TU1602030 lncRNA upstream 14102 66601157 ~ 66601881 (-) True G1402787
TU1602033 lncRNA upstream 17151 66604206 ~ 66605343 (-) False G1402790
TU1602034 lncRNA upstream 17151 66604206 ~ 66605461 (-) True G1402790
NM_001165126.2 mRNA downstream 79148 66502032 ~ 66503955 (-) True abt1
XM_036947580.1 mRNA downstream 103961 66451092 ~ 66479142 (-) False cdk16
XM_036947581.1 mRNA downstream 103962 66451092 ~ 66479141 (-) False cdk16
XR_005036588.1 mRNA downstream 112461 66451092 ~ 66470642 (-) False cdk16
XR_005036590.1 mRNA upstream 111583 66698638 ~ 66706256 (-) False LOC118939570
XM_021566996.2 mRNA upstream 151271 66738326 ~ 66767036 (-) True slc6a8
XM_036947589.1 mRNA upstream 235279 66822334 ~ 67012161 (-) False LOC110492586
XM_036947590.1 mRNA upstream 235279 66822334 ~ 67012161 (-) False LOC110492586
XM_036947592.1 mRNA upstream 434880 67021935 ~ 67028778 (-) False LOC110492588
TU1601943 other downstream 88436 66484901 ~ 66494667 (-) False G1402707
TU1601912 other downstream 156781 66425551 ~ 66426322 (-) False G1402686
TU1601915 other downstream 156781 66425551 ~ 66426322 (-) True G1402686
TU1600365 other downstream 828493 65720507 ~ 65754610 (-) True LOC110492562
TU1600638 other downstream 946731 65635482 ~ 65636372 (-) True G1401617
TU1602806 other upstream 856366 67443421 ~ 67444179 (-) True G1403498
TU1604092 other upstream 2204134 68791189 ~ 68795025 (-) True LOC118939478
TU1604570 other upstream 2616231 69203286 ~ 69207158 (-) True G1404974
TU1604630 other upstream 2690772 69277827 ~ 69280359 (-) True G1405016
TU1604821 other upstream 2930700 69517755 ~ 69518113 (-) True G1405172

Expression Profile