RNA id: XR_005036590.1


Basic Information

Item Value
RNA id XR_005036590.1
length 1263
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC118939570
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 66698638 ~ 66706256 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCCCTTCCTCAGAAACCATTctagaacaagaacagactggaGCCAGTTGGTGTGCTCCGGGCGGGGGAGGTGGGCAGGCAtggatactcacacacacaggagcaggGCGAAGCCAGCAATGTACTCATTCCTCTGGGCTCTGAACAACTTCATGTGAATGTGATCTACAGCCACTGGGTTGTTGGTCAGGTCCACCTTCTCAGTCACACTGTACTTTCGCACCTCCCTGAACGCATCTACATAGAAACAGAGACAAGAGCATGGGAAAACTATGGAAGACTAAAGTGGTGTGGGTTTTTCCTCGGCCACTACACAATTTGTGATCgacaatgacccaaaacacacctccaggctgtgtaagggctattttaccaagaaggagagtgatggagtgctgtatcagatgatctggcctccacaatcacccgacctcaactcatttgagatggtttgggatgagttggaccacagatggaaggaaaagcagccatcaagtgctcagcatatgtgggaactccttcaagactgttggaaaagcattccacatGAAGCTGGCTGAGTGTGTGGAaaactgtcaaggcaaagggtggctactttgaagaatctaaaatattttaatttgtttaacacttttggttactacatgattccatgtgttaattcatagtttgtcttcaccattattctacaatgtagtaataaaaatagtaaaaataaagaaaaacccttgaatgagtaggtgtgtccaaacttttggctggtactgtaagTCAAAAACTCTTAAAGGCAGTGTACTGTATCATTTCCGACAAAAATGGTTGACTTGATGTTTATCCTGATTTTTTCCTCCCCTGATATTCACTTGTCTCTCACTCCCAGTTTATCATGAAAAAATTGTAGGCAAGCCGATGTTACTGGTTTGACTGGGATAGTTGTCTTTTAACATTGATGGACAATAGCATCTCTCGACATCTCTGTCACTACAGGCGATAATTCTTCGTTGGAAAAAGATGCAGGGATAAGAACGGCCTTATGACTTAAACGGATGCAATAGTGCACTGGATCACGGTGATAACACTCCTGGTGGTGCTCTGCACCAAGTGTAATATTACAATGTTAACATTCTGTTAGCTCTACTTATAAAGGGACACAGGATTTTGTACTTGCATTACAATTATACTAAACAcaattataaacgcaacatgtaaagtgttggtcccatgtttcatgagctgaaataaaatatcccagaaatgttcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1601993 lncRNA downstream 10563 66684891 ~ 66688075 (-) True G1402750
TU1602067 lncRNA downstream 43893 66654107 ~ 66654745 (-) True G1402821
TU1602051 lncRNA downstream 70780 66627605 ~ 66627858 (-) True G1402805
TU1602001 lncRNA downstream 76743 66616762 ~ 66621895 (-) True G1402758
TU1602041 lncRNA downstream 85021 66613390 ~ 66613617 (-) True G1402797
TU1601994 lncRNA upstream 20507 66726763 ~ 66727652 (-) True G1402751
TU1602101 lncRNA upstream 30114 66736370 ~ 66736681 (-) True G1402855
TU1602135 lncRNA upstream 90889 66797145 ~ 66797353 (-) True G1402888
TU1602153 lncRNA upstream 112765 66819021 ~ 66819255 (-) True G1402906
TU1602155 lncRNA upstream 116461 66822717 ~ 66824977 (-) True LOC110492586
XM_021566981.2 mRNA downstream 111583 66583103 ~ 66587055 (-) True zgc:86609
XM_021566982.2 mRNA downstream 111843 66583103 ~ 66586795 (-) False zgc:86609
NM_001165126.2 mRNA downstream 194683 66502032 ~ 66503955 (-) True abt1
XM_036947580.1 mRNA downstream 219496 66451092 ~ 66479142 (-) False cdk16
XM_036947581.1 mRNA downstream 219497 66451092 ~ 66479141 (-) False cdk16
XM_021566996.2 mRNA upstream 32070 66738326 ~ 66767036 (-) True slc6a8
XM_036947589.1 mRNA upstream 116078 66822334 ~ 67012161 (-) False LOC110492586
XM_036947590.1 mRNA upstream 116078 66822334 ~ 67012161 (-) False LOC110492586
XM_036947592.1 mRNA upstream 315679 67021935 ~ 67028778 (-) False LOC110492588
XM_021567004.2 mRNA upstream 315679 67021935 ~ 67033032 (-) False LOC110492588
TU1601943 other downstream 203971 66484901 ~ 66494667 (-) False G1402707
TU1601912 other downstream 272316 66425551 ~ 66426322 (-) False G1402686
TU1601915 other downstream 272316 66425551 ~ 66426322 (-) True G1402686
TU1600365 other downstream 944028 65720507 ~ 65754610 (-) True LOC110492562
TU1600638 other downstream 1062266 65635482 ~ 65636372 (-) True G1401617
TU1602806 other upstream 737165 67443421 ~ 67444179 (-) True G1403498
TU1604092 other upstream 2084933 68791189 ~ 68795025 (-) True LOC118939478
TU1604570 other upstream 2497030 69203286 ~ 69207158 (-) True G1404974
TU1604630 other upstream 2571571 69277827 ~ 69280359 (-) True G1405016
TU1604821 other upstream 2811499 69517755 ~ 69518113 (-) True G1405172

Expression Profile