RNA id: XM_036947589.1


Basic Information

Item Value
RNA id XM_036947589.1
length 9944
RNA type mRNA
GC content 0.49
exon number 32
gene id LOC110492586
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 66822334 ~ 67012161 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTAGAGAGTGCCATGCGATTCAAGCAGTGAGTGCTCTGTTGGTTTATTTCGAGGATTTTGCGCAGAATTATAACTAATTAACAAATAATTATAGGCCTATATGATAACCGCGGGAAAAAGAACTGCACGTGGTTGTGGATGTAACTGTTGCACTTTAAGTACAGACATGAACCACTGAACTGAGACAGACAAAGGACTGCCATAAGCTCACGTGACGAGCTCTATTCTCCCACCACCAAAAGGTCTCCATCATGACACCCAAATGGCTGGTGGTATTTGTCCTTTTTCTCCACTCTGGGACTAACAATACATTCCCCATGGTCCCGACCGAGCTCCCCCCTGAGACAGGCACCTACAGGGTCACAGACACCAGCCTGACTCATCTCACAGTGCACAGCCGGACGGGAGAGGTCTATGTGGGAGCAGTGAACCGCATCTTCAAGCTGTCTGCCAACCTAACAGAGCTGCGTTCACACATGACTGGCCCCGTGGATGACAACGCCAAATGTTACCCCCCTCCCAGCGTCCGAGCCTGTGCACATAAACTGGAGTCCTCTGACAACGTCAACAAGTTGCTGCTGGTTGATTACGCTGGCAACCGCCTGGTAGCATGTGGAAGCATCTGGCAGGGAGTGTGTCAGTTCCTGCGACTGGAGGACCTCTTCAAGCTGGGAGAGCCCCATCACCGCAAGGAGCACTACCTCTCTGGAGCCAGGGAGGCTGACGGCATGGCAGGAGTGGTGGTTGACAGTACAGAAGGGAAGTGGAAGAATGAGAAGAAGGGGGGCAGCCGGCTGTTCATTGGGGCAGCCATCGATGGCAAGTCAGAGTATTTCCCTACCCTGTCCAGCCGTAAACTGGTCACTGATGAAGAGAGTGTTAACATGTTCAGTCTGGTCTACCAGGATGAGTTTGTGTCATCACAAATCAAGATACCCTCCGACACCCTGTCCCTCTACCCGGCATTTGACATTTACTACGTGTATGGATTCTCCAGCCGTACCTACATCTATTTCCTGACGTTGCAGCTGGACACACAGCTCACCCAGATGGATGCCACCGGTGAAAAGTTCTTCACCTCCAAGATAGTGCGGATGTGTTCCAACGACACTGAGTTCTACTCTTACGTGGAGTTCCCCCTGGGCTGCACCAAGGAAGGTGTGGAGTACCGGCTGGTCCAGTCCGCCTACAAGCACCGTCCAGGTCGGATGCTGGCCCAGGCCTTGGGGCTGTCTGAGGACGAGGATGTGCTGTTTGTCGTGTTCTCCCAGGGCCAGAAGAACCGGGCCAACCCGCCTCGGGAAACAGTCCTGTGTCTCTTTACCCTGCATCAGATCAACCTGGCTATGAGGGAGAGGATCAAGTCGTGCTACCGTGGGGAAGGCAAGCTGTCCCTGCCCTGGCTGCTCAACAAGGAGCTCCCCTGCATCAACACGCCGAAGCAGATTGGTGATGACTTCTGTGGGCTGGTGTTGAACCAACCTCTTGGGGGTCTGCGGGTGATAGAAGGGACCCCTCTCTATGACGACGGCGTGGACGGTATGGGAGCGGTAACAGCCTACACCTATGGAGATCACTCCGTGGTGTTTGTGGGAACCCGGAGTGGACGCCTCAAAAAGATCCGAGTAGATGGCATACCTCCCCCGTCCCAGAGTGCTTTGCTGTATGAGACTGTTACAGTGGATGAAGGGAAACCTATTCTGCGTGACATGGTCTTCAGCCCTGACTACCAACACATCTACATGCTAAGTGACaaacagGTCAGCCGGTTACCTGTGGAGAGCTGTGGCCAGTACACCACCTGTAAAACCTGTCTGGGCTCTGGAGACCCCCACTGTGGATGGTGTGTACTTCACAACAAGTGTTCCAGACAGGAGGCCTGTGAGAAGTGGGTCGAGCCGCAGCATTTCAACACAGAGCTAgatcactgtgtggacattagtgTCACACCTAACAACATATCTGTGACCTCTACGTCCACTCAGctgAGTGTGAGAGTGGTCAACGTGCCCAGCCTGTCAGCCGGGGTGACATGTGTGTTTGAGGAGCTGACAGAGAGCCCAGGGGAGGTATTGGCCAAGGGGCAGGTCCTCTGTATGTCCCCCTCCCTCAGAGATGTCCCCTCCCTCACACAGGGATACGGGGACAAGAGAGTGCTAAAGCTTTCCCTGAAGTCCAAGGAGACAGGGCACAAATTCATCACCACTGACTTCATCTACTACAACTGCAGCGTGCTCCAGTCgTGCACCTCATGCGTGAGCAGCCCCTTCCCCTGCAACTGGTGTAAATACCGCCACATCTGCACCAACAACCTGGCAGAGTGCTCCTTCCAGGAGGGACGCGTCAGCAGCGTGGAGGGCTGTCCCCAGATCCTGCCCACCAGTGACATTCTGGTACCTGCAGGGATCATTCGTCCAATCACGCTGCGAGCCCGGAACCTCCCTCAACCCCAGTCTGGACAGAAGAACTATGAGTGTGTGTTTAACATCCAGGGCAAGATGCAACGCATCCCAGCTGTACGCTTCAACAGCTCCTGTATCCAATGCCAGAACACCTCATACTGGTATGATGGGGACGAGACGGGAGACCTGCCTGTTGACTTCTCTATCGTCTGGGATGGAGACTTCTTCATCGACAAGCCTCCCACCATGAAAGCCCTGCTGTATAAGTGCGAGGCCCAGAGGGACAGCTGTGGCCTGTGTCTGAAGGCCAGCACAGCGTTTGAGTGTGGCTGGTGCCTGGACAACAAGAAGTGTCTCCTGAGGCAGCACTGCCAGACGCCGGAGCAGAACTGGATGCACCCCGGCAGGCACAACGTCCGCTGCAGCCACCCCCGCATCACCAAGATCCGCCCGCTGACGGGGCCCAAAGAGGGGGGCACGCGAGTGACGATCGAGGGCGAGAACCTCGGGCTGCAGGTGCGGGAGATCGCCCACGTTCAGGTGGCTGGGGTTCGCTGTAACCCTGTGACCTCCGAGTACATCAGCGCTGAGAGGATTGTGTGTGACATGGCCGAAGCGCTGCTGCCCCACTCTCCAGGCGGTCCGGTGGAGCTATGTATCGGGGTGTGCAGTGCAGAGTACCGCACCCAATCTTCCCAGACTTACTCCTTCGTGacCCCCAGCTTCAACCATGTGCACCCGGAGAAGGGCCCCGTGTCCGGGGGGACCCGGCTGACGATATCAGGCCATCATCTGGACGCTGGTAGCACCGTCACTGTGTTCATCGCCCAGGAGGAGTGTCTGTTTGTTAAGAGGACCAACAGGGACATTGTGTGTGTGACACCGTCGTCCCTGTCTGGCTCAGGGCCTGCGTCAATCAAATTGTTAATCGACAAAGCTGAGGTCACCAGCAGTGACACACGCTACATCTACACAGAGGACCCCACCATCTCCAGCATCGAGCCCAGTTGGAGTATAGTGAATGGTAGCACCTTGATCACCGTCACAGGTACCAACCTGCTCACCATCCAGGAGCCCAAAGTCCGTGCCAAGTATGCAGGAATACAGACTACTAATGTGTGCACTGTGGTGAATGACTCTGTGATGACCTGTCTGGCCCCGGGTATCATTTACACCAAGCACCAGGCCCCAGAGTCAGGCCTGCACCCCGACGAGCACGGCTTCATCCTGGATCACGTGGCTGCGCTGCTCGTCCTCAACGGGACACCTTTCACCTACTATCCCAACCCCACCTTCGAAACACTAGGGAACTCTGGGATAATGGAGGTCAAGCCCGGCTCTCCCATCATCCTCAAAGGCAAGAATCTGATTCCCCCTGCTCCGGGCAACGCCCGGCTGAACTACAGCGTGATGATTGGTGAAACGCCCTGTCTGTTAACTGTCTCGGAGTCTCAGCTGCTCTGTGATTCGCCAGACCTGACCGGGGAGCAGAGAGTCGTGATCACGGTGGGGGGTTTGGAGTACTCCCCAGGAACACTGCACATCTACTCCGACAGCACCCTTACCTTACCGGCCATCATCGGGATCGGAGCGGGAGGAGGGGTGCTTCTCATCGCCATCATTGCTGTGCTCATCGCCTACAAGAGGAAGACCCGGGATGCTGACCGCACCCTGAAACGCCTGCAGCTGCAGATGGACAACCTGGAGTCCAGAGTGGCCCTGGAGTGTAAAGAAGCATTCgctgagctacagacagacatCCAGGAGCTGACCAATGACATGGACGGAGTGAAGATCCCCTTCCTGGAGTACCGTACCTACACCATGAGAGTCATGTTCCCCGGCATCGAGGAGCACCCCGTCCTCAAGGAGCTGGATGTAAGTTCCCCGGCCAATGTGGAGAAAGCCCTGCGTCTGTTCAGCCAGCTGCTGCACAGTAAGATGTTTCTGCTGACCTTCATCCATACCCTGGAGGCCCAGAGGTCATTCTCCATGCGGGACCGAGGAAATGTGGCCTCTCTGCTCATGGCCGCTCTGCAGGGCCGCATGGAGTACGCCACCGTGGTACTTAAACAGTTGCTGGCTGACCTCATAGAGAAGAACCTGGAGAACCGCAACCATCCTAAACTGCTGCTCCGACGGACGGAGTCGGTGGCTGAGAAGATGCTCACCAACTGGTTTACGTTCCTGCTGCATCGCTTCCTCAAGgagTGTGCTGGGGAGCCTCTGTTCATGCTGTTCTGTGCCATCAAGCAGCAGATGGAGAAGGGGCCTATAGACGCCATCACAGGAGAGGCGCGCTACTCCCTCAGTGAGGACAAGCTCATCCGCCAGCAGATTGACTACAAACAGCTGacacTGATGTGTATCCCTCCGGAGGGAGAGGCAGGCACCGAGGTCCCGGTGAAGGTGCTGAACTGTGACACGGTCACTCAGGTGAAGGACAAGCTGCTGGACGCTGTGTACAAGGGCATCCCCTACTCCCAGAGACCCCAGGCTGATGATATGGACCTGGAGTGGCGACAAGGAAGACTGACTAGAATTATCCTTCAAGATGAGGACGTCACCACAAAGATTGAGAGTGACTGGAAGAGGCTCAACACCCTGGCCCACTACCAGgtGGCAGATGGGTCTTTGGTAGCCCTGGTCCAGAAGCAGGTCTCTGCCTACAACATCGCCAACTCCTTTACCTTCACCCGCTCTCTGAGTCGTTATGAGAGTCTCCTGAGGACGTCCAGCAGCCCAGACAGCCTGCGCTCCCGGGCTCCCATGATCACCCCTGACCAGGAGACTGGCACCAAGCTTTGGCACCTGGTCAAGAATCACGAGCACGCTGACCAACGGGAGGGCGACCGCGGCAGCAAGATGGTGTCTGAGATCTATCTCACCCGCCTACTGGCCACCAAGGGAACTCTGCAGAAGTTTGTGGATGACCTTTTTGAGACGGTGTTCAGCACGGCGCACCGCGGCAGTGCCCTCCCTCTGGCCATCAAGTACATGTTTGACTTCCTGGACGAGCAGGCTGACAAGAGGCAGATCACTGACCCTGATGTCCGTCACACCTGGAAGAGCAACTGTCTGCCCCTGCGGTTCTGGGTGAACGTGATCAAGAACCCCCAGTTTGTGTTTGACATCCATAAGAGCAGCATCACAgacgcctgtctgtctgtggtggccCAGACCTTCATGGACTCCTGCTCCACGTCAGAGCACCGCCTGGGCAAGGACTCGCCCTCCAACAAGCTGCTGTACGCTAAAGACATCCCCAACTACAAGAGCTGGGTGGAGAGGTACTACAGAGATATCAGTAAGATGCCTACCATCAGTGACCAGGACATGGATGCCTATCTGGTGGAGCAGTCTCGTCTCCATGGCACCGAGTTCAACACTCTCAGTGCTCTCAGTGAGCTCTACTTCTACATTAACAAGTACAAAGAGGAGATTTTGACCGCACTAGACAGGGATGGGTACTGCCGCAAACACAAGCTGCGACACAAACTGGAACAAGCCATTAACCTGATGTCGGGCAGCAGCTGAGGACAGAGGATGGAACAGGGGGTCGGGAGAGAAGTGGGAAATGGGGGTTTGGTTGAACTGGTGAACGGACCTGTGTTGGAGCATCCACAGCTTGTGCAATTAAAAAGGAGGACTGGACACTGGACAATCAACACAACGAACCACAGCACATTGAGCCCAATGTCTACTGACCAGATTCTGTGCCCAATATCCTCACTCTCTCAAACCTCTACCTGCCATTGCCAGTGAGACATTCTGAGTAGTTTTTTTCTCCACACTGGCCTTTTCAATGGCAGACTCTAGTAACTGCCTAATCTAATGGAAGAGGACTGCTGTGGATAACTACCAGATTCATTCCAATAGAGGCATACAGTAAGTTGCCTTGGAAACTGTGCTGAACTGCCAAGCTAGTGCCATGGGAAGAGTAGCTTTTGGTCTGCGATAATAATTGTACAAAATGCTGAAAAGTAACATTTAGGTGTGGACTGTAGATTTGATCTTGAAATGTATGGGTTTTACCACAACTATGGTAAGGTACAAGTAGTAGACTATAACCTCTTGGCCCCAAAGGAAagcctcaaggttctgttttgtTGTGTTAGGGTTGGAGGTTCAATGCCAGTACGTGATGAAGGAGGCAGGCAGTGTATGGCCAAAAGACACCAAATTCTAGAAGCATCAGAGGCCTGATTAAGTGACATAAATTGAGGGGCGTGTTGGGGCTGAGGGGTGGCCATCCCCCTCGTCTCTCAAATGCCATAGCTACAAAGCGCCtttatctttttattttttattcggGCCAAATGGATGTTTGCTGATGGCTCAGAGTCCAGAGTTTTAAAGCTTGCCTTTTGTGTTGCAGTCAAGCAGGAAGTGAAGCCCTTTCCTCATGGACGTTCCACCCTAGTAACTGTCCAGCTAATTGTACTCAGATCATTGTTTTAGTCTGCTCCTCTGTGAATCTGATCTGTCAGGGTCCCAGGGGTTCCCGTCCAGAACTCAGGGCTACTGCTGTCGTGGAAACAACCCGTATAACCCAAATCAAACATCCTAAAAGTAGTTGATCCATTAACAGCAATAGGTCTAGTAATAAAACAGCCAGCCATGTTTCATTAGATTACACACCAAAAAGACACAGTTCCCGTTAGAGACTCTCTATCTTACGATAATCGTTCTGTGAAAATGGTCTTTCGCTTCCCGATGTTTGCCATTATTACAAATGACAGCTTGAGCATAATGTGTAACGCAACACCAAACACAACAGACGGGATAACATTATAGATTTATGTTTTAAATGCTGTCTGAATAGAATACTTGCTTATGTGTATGTGAGTTCACTTCTGGTAGGTCATCCATGGTAGTTTATGGGGGGGGGGAGCCTCTATTTGCTGCCTATGTTATCATTACCATACTAAGCACTGTtcagaagaagagagaggttaCTGTGTTGAATACTGATTTCCAACCCAGGAGACCTTCATCCTTCATTTTGTTTACCCTACGGTCCCATAAAGCCAGTAGCAGTAGGCCGATCTGTAGGTTCTGATcggatggtaaatgcccattttCTCTGTTGACTCCTTCCACGACAGACAGTAGAAGCTCTGTATTTTTCAGTAGTGGTACAGCAGCAGACTGTACACACTCCCATGTCCCCTCTCCATACTCCTCTCTCTGCTGGGAGGAAATACAGTCTGGTAGCCTTATACCTGAATATTATAGTACATTTACATGGTTCTGAGTTCAGTCCTCTCCAACAATTAAGTATTTATTGTTTTGCctttatttatttcatatttattttcattttacaCAAGAATGAAAACTCTTGTTTTGTACAGTGTTTGACTGAACGTACCTGAACACAGTGGATGTCCTCTGTACTACAGGTATACTGTATATGTCAAGTCTCTAACACCGTTGCAAGAGTATTTTCAATGCCAATTCACACACGGGACCGGGTTCATTTAGGATACATTCGTACATTCAGTAAATAACAGCATTCCTTCACATCCATAACTGAAAAATAAAACTGTGATCGCTACATCACGTGTTCAGTGACAACCGTGAGGAATGCAGACAGACCAAAGGAGGCACAGGGAAGAATCAAATGATCACTCTCTTGTCTTTGGGTTGAATAATGCCATTCGGCTTGACCCACACATTACAAATGATCACGCTCTTGTCTTTGGGTTGAATAATGCCATTCGGCTTGACccacacattacaatacattgtTAACCATAGATTATATCATGTTTTAAATTTCAGGTACAAACACATCTTTAAAAGATTTGTTCATTGAATAGGATAAAGCCTCAAATGACAATGTTCTCCCATAACTAATGGTAGACAAATATGTATTTCTACTACTAAAACCCAGAGGTTTGTGGTAGTCCAAATCCTGAATATAAATTTAGTATATCTAACTGTTCTTTTTATCCATCAAGTCCCCAAAGATTAAATACAATTTAGTAAATGAAACCAATACTTTGGTTTATCAATGTACAGGTGTTAACCCTTCTAGAGTCTAGATGCTGGGTGTTGTTTTGCGTTGGGACCTTAAACACAGTGACGCTCTGTTTTCTATGTAGATTAAATAGCTCTGAAACTAACTAATTACTGTGGAATAATTAGGCTTGCTTATCAGTCCAGGAGCGAAAGAGCCATTAGTATACCTTTTCAAAACCCATTAAATCGACACCAGAAGAAAAACGTATTTTTCTCCATGGAAGATACATATTGTAGATAAGCACCAAATCAATTTAGAATTTGGCCTTGGAACTCTGAGCGAAATACATTCTCAAATAAAACTGGAGCTCATTAGCATGTTAAGAGCTGCAGGAGGATAATTAAGGATAATAGGTTTCACCATCCTGGTGTTATTTTAGTGCAGAGAAATGGGGTCAGTGTATCTGGATCTAGGTCTGGATCTCACCGTCCACCGTGTGTGAAAAGGACTCAGTCAGAAATGACTGGCAGCTTGCCAGAGCTGCCCTGTCAGCATTGCAGGTGTATTACAGGTATCAACGCTATGTTTGAGCCTCTTTCTACAATTATAGCTTATCATAAATCTGAAAGAGAACATCTTGTATTTTGACTTAGTACCTCTTGGTTAACGCCATCTCATAGGGTTTGAAACTGGTTAAAATAGTAAGTGCAACACGGTATCAGGTTTCTTGGGTGAAATCTGTAATCATATCCAAAGTAGGCCTACAGTTTGGCTACCTGCCATACGTCACTTGTAAACTAGTGAAGGCCAGGTGATTGGGCTGTGGAACTCAGCCACTGCAGACACGTCAGTACGTCTGGTTTTGTAATGTTGTATAAACAGGAAGATAAAAAAGCACCTGTACCATGTAAGGAAGAAAAGAGTGAGTACAAACCTGTGATGTTTCTAAGTAGATACTGTAGAACTATTACATTATAGTCGGTGTTCtagtaaaaaacaaaaacatttgtctCAGATAAATTGATTCTAATTTATTTGTTGGTTTTGTCTGTTTATCCCAAATGTTTTAATCGATTTAACGTAACAAACTTGTTTACAGCTTCAAAGATATATGGAATTTATTAACTTAGTCTGAAGAGGAAGTAGCtttgtgactgactggctgattgactgacgGATGATTGCTCTGCCTAGTCCTtaattatatataaatatataaatatattttgtataatTATTTGTTTAAAATGTTTCTTTCTAAATTATTGTTTTtggttttatattttattttgttactttGAAGGAGTAGGAATGAGTCCTTTAAAACGCTGGCTACAATGAAGTGTTTTGTATATATTTGCACTTTTTTTTACTCAGTCGGAGAGGTTTTTGAAAGATTGGATTCTAACTTAATGTTGAAATGACAAGCATGGTGTTTTGTTTTGCTAATTAAAATATGTGGATGATGCTGTATGTTCTTGAACATTTTATTTGTGTACTATCCTGCAGGATGATTTTCTCTGAACAACTCAATGTTTGAATTCAAATAAAGGCAAGTGTTTTTGTAAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1602153 lncRNA downstream 3079 66819021 ~ 66819255 (-) True G1402906
TU1602135 lncRNA downstream 24981 66797145 ~ 66797353 (-) True G1402888
TU1602101 lncRNA downstream 85653 66736370 ~ 66736681 (-) True G1402855
TU1601994 lncRNA downstream 94682 66726763 ~ 66727652 (-) True G1402751
TU1602005 lncRNA downstream 116130 66699496 ~ 66706204 (-) True LOC118939570
TU1602262 lncRNA upstream 5516 67017677 ~ 67017989 (-) True G1403006
TU1602279 lncRNA upstream 41615 67053776 ~ 67056045 (-) True G1403022
TU1602285 lncRNA upstream 44530 67056691 ~ 67057203 (-) True G1403025
TU1602284 lncRNA upstream 45102 67057263 ~ 67061865 (-) True G1403024
TU1602277 lncRNA upstream 114485 67126646 ~ 67128821 (-) True G1403020
XM_021566996.2 mRNA downstream 55298 66738326 ~ 66767036 (-) True slc6a8
XR_005036590.1 mRNA downstream 116078 66698638 ~ 66706256 (-) False LOC118939570
XM_021566981.2 mRNA downstream 235279 66583103 ~ 66587055 (-) True zgc:86609
XM_021566982.2 mRNA downstream 235539 66583103 ~ 66586795 (-) False zgc:86609
NM_001165126.2 mRNA downstream 318379 66502032 ~ 66503955 (-) True abt1
XM_036947592.1 mRNA upstream 9774 67021935 ~ 67028778 (-) False LOC110492588
XM_021567004.2 mRNA upstream 9774 67021935 ~ 67033032 (-) False LOC110492588
XM_036947591.1 mRNA upstream 9774 67021935 ~ 67033045 (-) True LOC110492588
XM_036947601.1 mRNA upstream 459783 67471944 ~ 67492651 (-) False LOC110492592
XM_036947602.1 mRNA upstream 459783 67471944 ~ 67492651 (-) True LOC110492592
TU1601943 other downstream 327667 66484901 ~ 66494667 (-) False G1402707
TU1601912 other downstream 396012 66425551 ~ 66426322 (-) False G1402686
TU1601915 other downstream 396012 66425551 ~ 66426322 (-) True G1402686
TU1600365 other downstream 1067724 65720507 ~ 65754610 (-) True LOC110492562
TU1600638 other downstream 1185962 65635482 ~ 65636372 (-) True G1401617
TU1602806 other upstream 431260 67443421 ~ 67444179 (-) True G1403498
TU1604092 other upstream 1779028 68791189 ~ 68795025 (-) True LOC118939478
TU1604570 other upstream 2191125 69203286 ~ 69207158 (-) True G1404974
TU1604630 other upstream 2265666 69277827 ~ 69280359 (-) True G1405016
TU1604821 other upstream 2505594 69517755 ~ 69518113 (-) True G1405172

Expression Profile