RNA id: TU1602155


Basic Information

Item Value
RNA id TU1602155
length 2201
lncRNA type sense_over
GC content 0.38
exon number 2
gene id LOC110492586
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 66822334 ~ 67012161 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTATTTGCTGCCTATGTTATCATTACCATACTAAGCACTGTtcagaagaagagagaggttaCTGTGTTGAATACTGATTTCCAACCCAGGAGACCTTCATCCTTCATTTTGTTTACCCTACGGTCCCATAAAGCCAGTAGCAGTAGGCCGATCTGTAGGTTCTGATcggatggtaaatgcccattttCTCTGTTGACTCCTTCCACGACAGACAGTAGAAGCTCTGTATTTTTCAGTAGTGGTACAGCAGCAGACTGTACACACTCCCATGTCCCCTCTCCATACTCCTCTCTCTGCTGGGAGGAAATACAGTCTGGTAGCCTTATACCTGAATATTATAGTACATTTACATGGTTCTGAGTTCAGTCCTCTCCAACAATTAAGTATTTATTGTTTTGCctttatttatttcatatttattttcattttacaCAAGAATGAAAACTCTTGTTTTGTACAGTGTTTGACTGAACGTACCTGAACACAGTGGATGTCCTCTGTACTACAGGTATACTGTATATGTCAAGTCTCTAACACCGTTGCAAGAGTATTTTCAATGCCAATTCACACACGGGACCGGGTTCATTTAGGATACATTCGTACATTCAGTAAATAACAGCATTCCTTCACATCCATAACTGAAAAATAAAACTGTGATCGCTACATCACGTGTTCAGTGACAACCGTGAGGAATGCAGACAGACCAAAGGAGGCACAGGGAAGAATCAAATGATCACTCTCTTGTCTTTGGGTTGAATAATGCCATTCGGCTTGACCCACACATTACAAtacattgtTAACCATAGATTATATCATGTTTTAAATTTCAGGTACAAACACATCTTTAAAAGATTTGTTCATTGAATAGGATAAAGCCTCAAATGACAATGTTCTCCCATAACTAATGGTAGACAAATATGTATTTCTACTACTAAAACCCAGAGGTTTGTGGTAGTCCAAATCCTGAATATAAATTTAGTATATCTAACTGTTCTTTTTATCCATCAAGTCCCCAAAGATTAAATACAATTTAGTAAATGAAACCAATACTTTGGTTTATCAATGTACAGGTGTTAACCCTTCTAGAGTCTAGATGCTGGGTGTTGTTTTGCGTTGGGACCTTAAACACAGTGACGCTCTGTTTTCTATGTAGATTAAATAGCTCTGAAACTAACTAATTACTGTGGAATAATTAGGCTTGCTTATCAGTCCAGGAGCGAAAGAGCCATTAGTATACCTTTTCAAAACCCATTAAATCGACACCAGAAGAAAAACGTATTTTTCTCCATGGAAGATACATATTGTAGATAAGCACCAAATCAATTTAGAATTTGGCCTTGGAACTCTGAGCGAAATACATTCTCAAATAAAACTGGAGCTCATTAGCATGTTAAGAGCTGCAGGAGGATAATTAAGGATAATAGGTTTCACCATCCTGGTGTTATTTTAGTGCAGAGAAATGGGGTCAGTGTATCTGGATCTAGGTCTGGATCTCACCGTCCACCGTGTGTGAAAAGGACTCAGTCAGAAATGACTGGCAGCTTGCCAGAGCTGCCCTGTCAGCATTGCAGGTGTATTACAGGTATCAACGCTATGTTTGAGCCTCTTTCTACAATTATAGCTTATCATAAATCTGAAAGAGAACATCTTGTATTTTGACTTAGTACCTCTTGGTTAACGCCATCTCATAGGGTTTGAAACTGGTTAAAATAGTAAGTGCAACACGGTATCAGGTTTCTTGGGTGAAATCTGTAATCATATCCAAAGTAGGCCTACAGTTTGGCTACCTGCCATACGTCACTTGTAAACTAGTGAAGGCCAGGTGATTGGGCTGTGGAACTCAGCCACTGCAGACACGTCAGTACGTCTGGTTTTGTAATGTTGTATAAACAGGAAGATAAAAAAGCACCTGTACCATGTAAGGAAGAAAAGAGTGAGTACAAACCTGTGATGTTTCTAAGTAGATACTGTAGAACTATTACATTATAGTCGGTGTTCtagtaaaaaacaaaaacatttgtctCAGATAAATTGATTCTAATTTATTTGTTGGTTTTGTCTGTTTATCCCAAATGTTTTAATCGATTTAACGTAACAAACTTGTTTACAGCTTCAAAGATATATGGAATTTATTAACTTAGTCTGAAGAGGAAGTAGCtttgtgactgactggctgattgactgacgGATGATTGCTCTG

Function

GO:

id name namespace
GO:0048755 branching morphogenesis of a nerve biological_process
GO:0060272 embryonic skeletal joint morphogenesis biological_process
GO:0008045 motor neuron axon guidance biological_process
GO:0048675 axon extension biological_process
GO:0048696 regulation of collateral sprouting in absence of injury biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1602153 lncRNA downstream 3462 66819021 ~ 66819255 (-) True G1402906
TU1602135 lncRNA downstream 25364 66797145 ~ 66797353 (-) True G1402888
TU1602101 lncRNA downstream 86036 66736370 ~ 66736681 (-) True G1402855
TU1601994 lncRNA downstream 95065 66726763 ~ 66727652 (-) True G1402751
TU1602005 lncRNA downstream 116513 66699496 ~ 66706204 (-) True LOC118939570
TU1602161 lncRNA upstream 5724 66830701 ~ 66830945 (-) True G1402914
TU1602163 lncRNA upstream 10817 66835794 ~ 66836024 (-) True G1402916
TU1602165 lncRNA upstream 17769 66842746 ~ 66842972 (-) True G1402918
TU1602166 lncRNA upstream 23368 66848345 ~ 66848616 (-) True G1402919
TU1602169 lncRNA upstream 29688 66854665 ~ 66854879 (-) True G1402922
XM_021566996.2 mRNA downstream 55681 66738326 ~ 66767036 (-) True slc6a8
XR_005036590.1 mRNA downstream 116461 66698638 ~ 66706256 (-) False LOC118939570
XM_021566981.2 mRNA downstream 235662 66583103 ~ 66587055 (-) True zgc:86609
XM_021566982.2 mRNA downstream 235922 66583103 ~ 66586795 (-) False zgc:86609
NM_001165126.2 mRNA downstream 318762 66502032 ~ 66503955 (-) True abt1
XM_036947592.1 mRNA upstream 196958 67021935 ~ 67028778 (-) False LOC110492588
XM_021567004.2 mRNA upstream 196958 67021935 ~ 67033032 (-) False LOC110492588
XM_036947591.1 mRNA upstream 196958 67021935 ~ 67033045 (-) True LOC110492588
XM_036947601.1 mRNA upstream 646967 67471944 ~ 67492651 (-) False LOC110492592
XM_036947602.1 mRNA upstream 646967 67471944 ~ 67492651 (-) True LOC110492592
TU1601943 other downstream 328050 66484901 ~ 66494667 (-) False G1402707
TU1601912 other downstream 396395 66425551 ~ 66426322 (-) False G1402686
TU1601915 other downstream 396395 66425551 ~ 66426322 (-) True G1402686
TU1600365 other downstream 1068107 65720507 ~ 65754610 (-) True LOC110492562
TU1600638 other downstream 1186345 65635482 ~ 65636372 (-) True G1401617
TU1602806 other upstream 618444 67443421 ~ 67444179 (-) True G1403498
TU1604092 other upstream 1966212 68791189 ~ 68795025 (-) True LOC118939478
TU1604570 other upstream 2378309 69203286 ~ 69207158 (-) True G1404974
TU1604630 other upstream 2452850 69277827 ~ 69280359 (-) True G1405016
TU1604821 other upstream 2692778 69517755 ~ 69518113 (-) True G1405172

Expression Profile