RNA id: XM_036947593.1


Basic Information

Item Value
RNA id XM_036947593.1
length 4842
RNA type mRNA
GC content 0.48
exon number 28
gene id LOC110492587
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 67034399 ~ 67128826 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctcagaATTAAGGCGATGGACTGGGGGGCTCAGCTTTTAGAGCTGAGGACACAGAACTACCAACTTTCAGATGACCTGCGGAAGAACACAACTGAGCTGAATGCTGTTCGTCTGAAGACTGTGACCTTGGAGAAAGATTACATCAAAGCACAGAAGGCTCTGAATAAAAGCAAGAAAGCTCAGGAGGTGGATGCATTACTCAGCGAGAACGAGATGCTGCAAGGCAAGCTGCACAGCCAAGAGGACGACTTCAGACTGCAAAACAGCACCCTGATGCAGGAGCTGTCCAAGTTATGTACTCAGATAGAGGAGCTACAACATGAAATCAAAGAGCTAAAGGATGGCAAGGGACTGCAGGCTGAATCCTCCGGTACCATCTCCATCTCTGTGGATGGAGAGTTACTGCGCCTCCAGGCagagaacactgcccttcagaaAAAGATGACGGCCCTTCAGGAGCGCCATGAGAGTGAGATAAAGAGCCAGAGGGGAGCGGAGGTCAGTGAAACCAAAGCCTCAGAGACAGATGGCCTGGCTGACACCAACGGTGTCCGGTTGCACTCTGACGTCAGTGAGACCAGGGAGGACTCTGCAGCCGGAACCAATGACAGACTGGAACAGGCAGAGGCAAAGTGTGCCAAACTGGAACAGCGAGTGGCTGAGCTAAGTGGACCTGCAGTGAGGACCCCCGGGCTAGTTATGAAACAGGATGCTCTTAGGTGGTCAGCACTGTGTCCAAATCCAATAACGCAATGCTTTGGGCCAGAGGTGGAGCTGCAGCTGCACACTGAGGTGGAGGAGAAGCGCCTACTGAAGGAGCAGCTACAAGCACTAGAGTCATCCAAACAGGCAGACATCACTCAACTTCAAGAAGAAATAGCAAAGCTCTCTGATAAATTGAAGAAAAAACAAGACTGCTTTCTGCGTTCGCAAGGTGAAAAAGAAGCCCTTTATAATGACAGCAGGACTAAAATCGATGAGATTcaacagaggaaggaggaggagctaAAGTCATTGAACATCCACATCCAGAAGTTACAGGGAGATCTGCTGTCAGCCAACCAGagtgtTGGAGAGATGAAGGAGCAGCTACAGAGCCGGCAGAAGGAGCATGAGTTAGTTCTACACACACTCAGAGATCAGATAGCGTGTCAGAGTGCTGTGAGTCAGGAGCAGGTGGAGAGTATCCTGACTGAGAACGATGCTCTCAGGACTAACCTAGTCGCTCTGGAACAGATTCAGACGGtgaagactcaggagatgaaccTTTTGCGTGACCAAAACACGGCTCTGAACGTTGAGCTGCAGCAGAGACGGACAGAGCAGGAGAGCTTCCTGGCACAGAGAGATGACCTTAACTCTCAGCTACAGGAGGGGAACCGTGCCAACAGCAGACTGTTGGAACAGCTGACTGTATTGGACCAATGGAAAGACCGATTACAGCAAGAGCTGGAGGAGGCTAAAAAGACAGCTGACAAGCGGAAGGTCATGCTGGATGAACTGGCCATGGAGATAATCACAGAGAAGTCCCGGCACAAGGAGGAGCTGAGCGACGTGCGTCTGCAGCATGAGAAGGAGGTGCTGGGGGTGCGGGCACGCTACGAGAAGGAGCTGAGGGGACTCCATGAGGACAAGAACCGCACAGAGGAGGGGATCCGCTCACAGCTCCGAGATGAGAagGCTCGCAATAAGGAGCTGGAGGGTCTGCAGCAGTGTGTGGAGGAGCTGCAGGCCCAGGTCCAGTCCATGGAGGACACTAAGGGCTGGTTCGAACGCAGACTCAAAGATGCTGAGGAGAGCATGGAGAAGAGCTGTCTGGAGCACCAGGAGAGCACGGAGAAGCTGCAGGAAGAACACTCTCTCCAACTGGAggttGGAAAGGCATCTGTTATAGATGGTGTGAACCTGCAGTTGAcagaggtagagaaggaaagggatgTGCATTTTGAAACCATTGGAAAACTGAAACAGGAGATTAAAGACACGGTGGATGGCCAGAGGATCCTGGAGAAGAAAGGTAGTTCAGCACTGAAAGACTTGAAGAGGCAGCTGCagctggagaggaagagagctGATAAACTCCAGGAGCGGCTACAGGAGATCCTCACCAACACTAAAACCAGGACAGgccTGGAAGAGCTGGTGTTGTCAGAGATCAGCTCTCCTAGTCCTAAGCAGCAGAGGGGAGATAGCAGCAGTGTCTCGTCCTTCAGCTACGGGGAGATCATGAAGGAGGGAGCCACATCACAGAACATCAACAAGTCCGCCAGTGGCAGCCCCCAGTCCCAGCGGCCTGCTGACCTGTCTGATGATGAGGTTGGGGAGCTGTTCCAGAGGCTGGCTGGGGTGCAGCAGGAGAAGTGGATGTTGGAGGAGAAGGTGAAACACCTAGAGGTCAGCTGCTCCTCCATGGCTGATGACATCTGTAAGAAAAGTTCTATCATCGAGACCTATGTCATGGACAGCAGGATAGCACATGGTGCACATGGTGCAACGTCGGTTGCCCATCACGTGGGCCAGGTGGGGGGACATGGTCATGGCTTGGGCTCTGTGCTCAGGGACCTGGTGAAGCCTGGGGACGAGAACATGCGGGAAATGAACAAGAAGCTGCAGAACATGCTGGAGGAACAGCTGACCAAGAACATGCATTTACAGAAGGACCTTGAAGTTCTGTCTCAGGAGATTGTCCGTTTAAGTAAAGACTCAAGTCCTGGAGCTGGCTCAGCTACGGACTAAAAGACTGGAACAAgtccctcctctctgccctctctcttcaCCTGTTTCTGTGGCCAACAAGAGGACATTacctaactgactgactgaacctCTGTCTGGGAACACAGATGAAAGGAGGGGGGTAGGAAGGGGTTATTGCTCTTGAAACTGCTTTACTGCTGAATGTACTTACTGTAACATGTCTTGGATCTTACTGTGGTATTGTGATCTgacttctgtctgtctgcactcTCTGCCTCCCCACTCTGGTGTTGATCTgacttctgtctgtctgcactcTCTGCCTCCCCACTCTGGTGTTGATCTGAAGAACGGCAGAAGGCAACTATGTCTGGATGCCAGAACACAGTGCTTTACTGGTTCACGACTTCAAGAGATGATTTAATGTTGCGAATAACAAGAGACATCCTGCCTACTCATACAGAGGCTTAAGCTGTTGTGTTTTGCCTGTACTCTTATTCATTTCTTTATACTTTCAACTCTGCAACTCTTGTTTTTGTTTGTATAAATCCTGTATATATGAATATGAAAAATCAACTGTAGTAATTTAACTGTTCTCAGAGTAATacgtattgtaatgaaacagcagggtcgttacagtattgTATATGAGCCAAAATGATTGTAAAGGTTTTATGTCCGTCATACATTCTAGATGCTGAAATGTCCAGTTTGAGTTTGTCTGGGGAAAGTGTGAGTATCCTAAAGCCagtagtaaaaaaatatatttacaaaaacTCAATAACATGCATAGTGTTGAGGACTGGACCAAACCACCACTGCTTCTTGGGGAATGGACAAAACCACTCCtatctctgggtcgctggaccaCACCACCCCTGTGTCCACTCACTGGGTTAGATCTCTGTGCTCGTTTCCTTTTCATCTGCACCAGTCCCGTGACTGCAGCAGAAGCACGGAGGAGGCCTTGGCAGCTCAGCATCTGGTGTCAACATGAACATGATGTCCAACTCCACAGAGACTGGCTGGATGCCTGCTTTGTGGCCCGCTTTCAAAATGTCACTTTGGCTGCTTTCTCTATCCCCAATTAAGACTCCAGGTGTGGTTAGATTTGGACATTTAATTCCGGCTTAACTCCACTTTGATATTTTCTAAAAATATTAGATTCCAAATAAGAGGAAGCAGAGGATTCTCTGTGATGAGCAGATGAATTTGCCCCCCTGGCTGAGGTCTAACAACAGTGTCAGTTGTCTTGAGTTCAACTCTTCCTTCACTCTGGCAAAACTCATCAGTGTGCTCGCTGAGTACAACATGGACAGGAAACTCATCACCAATATTTATTATCTGCCGTCAATACCTGGCCATTACTGCGTGTCAAAAGAACTGGCCCCATGCCCTGTAGGATGAGGGAAACATGAATCATGTGAAGCGGTGCCTTCTATTTCACCTGTCTTTGACTCACTTGGCAAATGTCTTATTTTAAATGACTTCTCAACATGACTGAACAGCAGTAGCTGGGCAGATCGGATGGTATAACACAGGGTGGTCTAACACGGCGTGCATACCTACCTGTGTTAGCCTTTTATACTTTGCGACATGTTTCCCTTATCTGAGAATGTATGCACTTCATTCAGGCCTCCGTGAACACTTGTTTAGGAATGAACAGATTGGTCAttggaagccccccccccccccaagaatgTCTTCTCTTATGTACAAATAAGGCTGGGCGATATATCAAATTAATATGATATATTCAAATATATTTGTTGGCGTGATGTTTCAAATGCCTATGTCACAAGAATCTAGGTTTTTATTTGATGTTCATTTTTATGAGCGTTTGATGTATTTTTTTGTCTCTTCTcgctccacagacaccaagcccctccccctccactcacaACAAAGACGAAAGATGACTTCTTCATCTCATACCTTTTACAGACAGCCtttgcttgtttaaaaaaaaaaaggtaatgcTTTTTAGAGTCGGGATAAGCCTCTCATACCTCCCGTGCACATGCCGGCAAGATTAGGAGTGGGAGGTGTATTTGAATAAATTCattgaatatacaccatcacaaataTGTTTTTGGCAGGTCCTAAGAAACATAAGACTAATAAAATGTGTTTTCAAGAAGAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1601489 lncRNA upstream 10352 67023337 ~ 67025429 (+) True G1402325
TU1601485 lncRNA upstream 17133 67018349 ~ 67018648 (+) True G1402323
TU1601382 lncRNA upstream 123355 66912211 ~ 66912426 (+) True G1402254
TU1601381 lncRNA upstream 123924 66911635 ~ 66911857 (+) True G1402253
TU1601377 lncRNA upstream 143091 66892469 ~ 66892690 (+) True G1402249
TU1601566 lncRNA downstream 40611 67169437 ~ 67170722 (+) True G1402397
TU1601569 lncRNA downstream 43078 67171904 ~ 67175897 (+) True LOC110492589
TU1601571 lncRNA downstream 123911 67252737 ~ 67253139 (+) True G1402399
TU1602409 lncRNA downstream 147125 67275951 ~ 67276164 (+) True G1403135
TU1602432 lncRNA downstream 148921 67277747 ~ 67278061 (+) True G1403158
XM_036947588.1 mRNA upstream 309365 66703053 ~ 66726416 (+) False bcap31
XM_036947587.1 mRNA upstream 309365 66704319 ~ 66726416 (+) True bcap31
XM_036947586.1 mRNA upstream 334111 66689062 ~ 66701670 (+) True slc35a2
XM_021566991.2 mRNA upstream 347705 66684106 ~ 66688076 (+) True pim2
XM_021566989.2 mRNA upstream 352426 66659066 ~ 66683355 (+) True otud5a
XR_005036395.1 mRNA downstream 4284 67133110 ~ 67147363 (+) True LOC118939477
XM_021567005.2 mRNA downstream 43004 67171830 ~ 67251627 (+) False LOC110492589
XM_036947600.1 mRNA downstream 131223 67260049 ~ 67275741 (+) True LOC110492590
XM_021567007.2 mRNA downstream 270035 67398861 ~ 67402310 (+) True pim1
XM_036947603.1 mRNA downstream 330452 67459278 ~ 67473693 (+) False LOC110492593
TU1601384 other upstream 121065 66914365 ~ 66914716 (+) True G1402256
TU1601182 other upstream 492096 66543311 ~ 66543685 (+) True G1402066
TU1600817 other upstream 1011536 66019001 ~ 66024245 (+) True G1401782
TU1600332 other upstream 1138718 65895891 ~ 65897063 (+) True G1401354
TU1599991 other upstream 1776937 65258515 ~ 65258844 (+) True G1401074
TU1602610 other downstream 343118 67471944 ~ 67476876 (+) False LOC110492593
TU1602611 other downstream 343118 67471944 ~ 67476745 (+) True LOC110492593
TU1602718 other downstream 524242 67653068 ~ 67653447 (+) True G1403412
TU1602769 other downstream 610136 67738962 ~ 67739702 (+) True G1403463
TU1602989 other downstream 644730 67773556 ~ 67777491 (+) True G1403655