RNA id: XM_036947605.1


Basic Information

Item Value
RNA id XM_036947605.1
length 2821
RNA type mRNA
GC content 0.52
exon number 8
gene id LOC110492593
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 67459278 ~ 67476876 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAACACATGGGGCTGTCTGACGTagctcccctaaccctgaccttgaGGAGGACAATAAAAGGGACACTGTCGCACACCGGTCAAACTTTTACAGTGCGCTCAAAGGTACAATACAAGTGCTGATCCCGGGTGAGAAAGAGGCTTACATTGAGGTGAAGGTTAAACAACTGGATGGTGACAAAAGCCACTGTGGAGACCAAAGATGCGCTACAGTACGTGGATGATCTATGTGAGTCACAGTTCTGTACATAATGCCATAGAGGAGCTCTAAGGAGGATAAACAGGTTGTTCTGAACCAGAGAGACTCTCCCTCTATGTGGGCGACATTTTGTTTCACAACcaagcgctctctctctcaacaaaGGCAAGAGGCGCACAATCGTTGACAACGCCTACATTGACATGCTGTGCAGTAAGTCTACAACAATGTCATGTTGGAATGATTTAATCCTCATTTAGATTAAATATGTTCACAGTGCTTACACAACGTTTAAAAATAGTACGTATGTAATAAGTAAGTAAATGcctaaaaatataaatacatttgtgtaACTCTGGGCCATATGTTTTCTCATGAGAATCATACATCATGAGAATCAATCCATGCTTTTGGATTTTAGAGTTTCATCTGTTCAGAGTTCTCCAAGTTTCTAAGCTTTTGACAGTGCTTCTTGTTGATCTTCCATACATGTTATTGATGTCCACCAATCCCCTCCACTACCACTTTTGCTCCCAGGGTGTGACAACAGTGGAGAACGTAATTGACGAGGAGGAACTGTTGGCCACAGATGACTGCCTTTTTCTACTAATGATCTTTGCTCCACTCTGTTTACTATGTTTACTCTCCTTactctctgacctctgacctctctctctgcctgacccctCCTCCGTATGCAATGGACAGTCTGGGCTTCACTCCTGAGGAGAAGTACAGTTGCTATAAAATAGTGGGGTCCATCATGCACTTTGGCAACACGAAGTTCAAGAAGGTTCGGAGAGAGGACGGTGTCACAGCTTcacaagagaagaggaagagaggggcctccttccagaccgtGTCACAGCTTcacaagagaagaggaagagaggggcctccttccagaccgtGTCACAGCTTcacaagagaagaggaagaaaggggcctccttccagaccgtGTCACAGCTTCACAGGGTCCTGAACCCCATGGCCATCCCTGAGGAATCCTTTGTGGACAGCAGGAAGGCTGTGGAGAAGCTGCTGAGATCACTGGACACATTGACCACACCCAGTACAAGTTTGGAATGAATCACCAAGAGACAAATCCAGTAAAACTTCTTGGCGTTTACAATGGTGAAGAACTGGCCCTGCTTTTCTTCAAGCTCAGGCCTCTCCTGAGGAGCACCACGGCAGAGAAGCTGGCCCTGCTTTTCTTCAAGCTCAGGCCTCTCCTGAGGAGCACCACGGCAGAGAAGCTGGCCCTGCTTTTCTTCAAGCTCAGGCCTCTCCTGATGAGCACCACGGCAGAGGAGCTGGCCCTGCTTTTCTTCAAGCTCAGGCCTCTCCTGAGGAGCACCACGGCAGAGAAGCTGGCCCTGCTTTTCTTCAAGCTCAGGCCTCTCCTGAGGAGCACCACGGCAGAGGAGCTGGCCCTGCTTTTCTTCAAGCTCAGGCCTCTCCTGAGGAGCACCACGGCAGAGGAGCTGGCCCTGCTTTTCTTCAAGCTCAGGCCTCTCCTTAGGAGCACCACGGCAGAGAAGCTGGCCCTGCTTTTCTTCAAGCTCAGGCCTCTCCTGAGGAGCACCACGGCAGAGGAGCTGGCCCTGCTTTTCTTCAAGCTCAGGCCTCTCCTGAGGAGCACCACGGCAGAGGAGCTGGCCCTGCTTTTCTTCAAGCTCAGGCCTCTCCTGAGGAGCACCACGGCAGAGAAGCTGGCCCTGCTTTTCTTCAAGCTCAGGCCTCTCCTGAGGAGCACCACGGCAGAGGAGCTGGCCCTGCTTTTCTCCAAGCTCAGGCCTCTCCTGAGGAGCACCACGGCAGAGGAGCTGGCCCTGCTTTTCTTCAAGCTCAGGCCTCTCCTGAGGAGCACCACAGCAGGGAAGGAGCTGGCCACACTCAAGGAGGAGTTTGCCAAGTTGAAGGACGTGGTTGACAAGTCTGAGGCAAACCACAAGGGGCTGCATGAGAGACAGGTGGCCCTGATCCAGGAGAAGAATGACCTGGCACTACAGCTGCAGGCAGAGCAGGACAACCTGATGGATGCAGGTTGTGACCTGCTGATCAAGGCCAAGGTCATAGAGCTGAAGGAAAGACTTGAGGATGAGGAGATGAACGCCAGCCTGAACACCAGCCTGAACGCCAAGAACCACAAGCTGGAGGACGTGTGTGCAGAGCTGAAGAAAGACAGATCTGGAGATCATCATGGccaaggtggagaaggagagacatgCCACAGAGAACAAGGTGTAGAACCGGATGGAGGAGATAGGTGTTCTGGGCGAGTCCATGCTGAGCCTGACCAAGGAGAAGACGGCCCTGCAGGAGGCCCACCGGCAGCCCGAGTCCATCTTGTGTCTGACCAAAGAGAAGGCGGCCCTGCAGGAGGCCTACCAGCAGGCCCTGACTAACCTGCTGGTCGGGGAGGATAAGGTCAATATGCTGAGCAAGGCCAAGGTCAAGCTGGAGCAGCAAGTGGACAATAGACGGCTTCCCAGGGACTAAACTTCCAGAAAGTCTCTTCCCAGATCCATGTAGGCCTCGTCGATGTAGCTGGCTATGGCACATAGTGAAGTCCGGTCTGAGTCCAACAGAACCGACACGGTCTCCTTCCAATAGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1602604 lncRNA upstream 20080 67438883 ~ 67439198 (+) True G1403317
TU1602600 lncRNA upstream 29375 67428739 ~ 67429903 (+) True G1403313
TU1602595 lncRNA upstream 38964 67415997 ~ 67420314 (+) True G1403308
TU1602540 lncRNA upstream 98921 67359952 ~ 67360357 (+) True G1403255
TU1602526 lncRNA upstream 104552 67350040 ~ 67354726 (+) True G1403245
TU1602618 lncRNA downstream 7977 67481670 ~ 67528492 (+) True G1403328
TU1602619 lncRNA downstream 10422 67484115 ~ 67486897 (+) True G1403329
TU1602620 lncRNA downstream 11020 67484713 ~ 67485018 (+) True G1403330
TU1602678 lncRNA downstream 97761 67571454 ~ 67572112 (+) True G1403379
TU1602677 lncRNA downstream 98651 67572344 ~ 67572923 (+) True G1403378
XM_021567007.2 mRNA upstream 56968 67398861 ~ 67402310 (+) True pim1
XM_036947600.1 mRNA upstream 183537 67260049 ~ 67275741 (+) True LOC110492590
XM_021567005.2 mRNA upstream 207651 67171830 ~ 67251627 (+) False LOC110492589
XR_005036395.1 mRNA upstream 311915 67133110 ~ 67147363 (+) True LOC118939477
XM_036947597.1 mRNA upstream 330452 67035781 ~ 67128826 (+) False LOC110492587
XM_036947638.1 mRNA downstream 801802 68275495 ~ 68279289 (+) False LOC110492619
XM_021567047.2 mRNA downstream 801804 68275497 ~ 68279289 (+) True LOC110492619
XR_005036609.1 mRNA downstream 827335 68301028 ~ 68345013 (+) False LOC110492620
XM_021564513.2 mRNA downstream 875080 68348773 ~ 68357169 (+) True LOC110491164
XM_036947640.1 mRNA downstream 923069 68396762 ~ 68405191 (+) False LOC110492622
TU1601384 other upstream 544562 66914365 ~ 66914716 (+) True G1402256
TU1601182 other upstream 915593 66543311 ~ 66543685 (+) True G1402066
TU1600817 other upstream 1435033 66019001 ~ 66024245 (+) True G1401782
TU1600332 other upstream 1562215 65895891 ~ 65897063 (+) True G1401354
TU1599991 other upstream 2200434 65258515 ~ 65258844 (+) True G1401074
TU1602718 other downstream 179375 67653068 ~ 67653447 (+) True G1403412
TU1602769 other downstream 265269 67738962 ~ 67739702 (+) True G1403463
TU1602989 other downstream 299863 67773556 ~ 67777491 (+) True G1403655
TU1603513 other downstream 815822 68289515 ~ 68290086 (+) False G1404105
TU1603494 other downstream 845962 68319655 ~ 68343495 (+) True LOC110492620

Expression Profile