RNA id: XM_021567018.2


Basic Information

Item Value
RNA id XM_021567018.2
length 2317
RNA type mRNA
GC content 0.47
exon number 8
gene id LOC110492594
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 67499665 ~ 67510144 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATGCCACCGCTCATGCAGATGCTGCAAAACAGAACATTTGCACAAACCAATTGCACCTCATTGCTACAGCTGATGACTCATTGATCAAGTCACTGATGTCAAAGGTCTGTCTGTTCCAATTACTACAGCCCCATGTTCAGTAGATATTGTTGAACAAAAAtctttcttcctttctctttGTGCATCACTTTTTCTTtgtcttccctccactcttctccatttccctctcttcACTCTGAAATCTGAGTTGTGGTGTGTACATGTTTCAGGCCTCATTGAAACAGGAAACAGCGTGTGTGAGGTGAATATAAAAAAGTCCTGTCAAATCTCTCCACTCAGATGTACTATAGATCACTCTGCTACGCGTACGTAGACTCTACCTACCAACGATGCCTCCTTTCCTCTTGGAACACCACAAAGGAGAACACTCTTTCTTCATTGGAGCCTAAAGAAGTCTCACACAGACTCTCATACACACATCGCACTCTCGTTCCACATGTGAACACTACCGACAGCGTGCAACTCCCAGACCCACTGGACTCTTCTGGCCTCTGGGCCGCACCTCTATCCTTGTGCTAGTCTACTATGGTACTCTACAGCTCTGACATCAACTCATACCACAGCATCAGAAGACTGACGTTCACCAGTGCCACAACAGGGAAATGCTAGTCCTCTGGTGACCCATACGAGCTCGACATCGCCATGGGCAGTGGGCCCAGTAAAGAGTGTCGGGGATCCAGCACTCAGGCAGCCTTGCTGGGCCAGGAAGAGCCCGCTGAGTCAGTCATACTGGAGAGCAGCAAGTATATGGTAGTGGCCCTGTATAACTATCCCACTGGTCCCCCAGCACACTGCCGCATCCACGCTGGAGAGAGACTCAACGTGCTTTCAGACGAGGGGGAGTGGTGGAAGGTGAGATCCTCTGCCACAGGCAATGAGAGCTACATCCCCAGCAACTACACAGCCAAGGTGTACCACAGGTGGCAGTATGAGGGTCTCAGCCGAGAGAAGGCTGAGGAGCTCCTCTTTCTGCCCTACAACCAGACTGGCTCTTTTCTGGTCCGGGAGAGTGAGACCCACCCTGGTGCCAACTCCCTGTCAGTGCGTAAGAGCAGTGACCAGGATCGTCGCTCAGTCAAACACTACCGGATCCAACAACTGGAGAATGGCTGGCTCTACATCTCCCCCTGCCTCACCTTCCCCAACCTCAGAGCTCTGGTAGACCACTACTCAGAGGTCCGTGATGGGCTGTGCTGTCTGCTAGGGGAGCCCTGCTTCATCCAGGGGTCCAACAACGTTCCTGTGGTTACTGGGCCACTCCCCATGGCTGTCAGGAAGCCCACCCTCAACTGGAAAGATATGGACAGctccATGATCTTTGGCAAGGATAAAGGCAAGGACAATGAGGATTCCCTGGTGAGCGAGGGATTAAAGGAGGCCATCAAATCCTACCGCTTCATGACAGAGGACTGCAAAGGCTCCAGCCACAAATGGGACAGCTGAGCATGGATCTGGCATCATAACGACAGAGAGATACTCAGACTAAAACAGACCATAAGATGGAGAGCTTTGCATCAAGCTACCCATTAAAGCTGAGGCAATCCTGAGGACCAGACATTCTGGCCATGAACCCAATGGATCTCATTAAAGGAATGTTGTTAGGGGAACTGGAAATCACAACTCAACCACTGCAGAGAACCGTGGTTCTCAAAGCTATGGTTGTAGAGTGCTCAACATTACATTGCCAATCAGCTGAGGCCCATCTTTGCTTGGATTCATGAACAGAATAAATGTTTAGATCCTGGAGGCAGACTTTGCTAGACTTAACAGAAAGTAGTTTGAACGTGAGATATACAGCCTTATGAAAGTGATCCCGTATCATCAATAAACAGACTATATGGTTGGTTTTGTTGAAGTACGCTACCTTGAAAACAATTAAGGAACTGTGAGGTATAAGAATTAGTCTGTTTGATTTATGTGTTTCCTGTCCTGAACATGAACACCTTTTAGCTGTTGCTTGTTCTCTTCCGCACCACAGTCTTGACTTTGGCACAGGAAATGGTCAAGGTGCAGTGGAAAGCACAATGGTGTGGCAGAGACAAAAAGTTGAGGTTGTGGTAAAGAGCATCTCAAAGTTATGTCAAATATTATGGTATGAAACACTGACATGTTCTTCTGAGGTTTCATCAACTGAAACAATGcactgtagtgtgtgtatgtatataatgTTAATATCGAGTTTTGTGATGTTTTTGGGTGGGTggaaatttattttttattttgtttaactATTCTACATTAAAATGTTGCATTTAG

Function

GO: NA

KEGG:

id description
K23698 SLA; src-like-adapter

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1602811 lncRNA downstream 36721 67462362 ~ 67462944 (-) True G1403503
TU1602812 lncRNA downstream 38263 67460247 ~ 67461402 (-) True G1403504
TU1602786 lncRNA downstream 93497 67405788 ~ 67406168 (-) True G1403478
TU1602785 lncRNA downstream 94112 67405191 ~ 67405553 (-) True G1403477
TU1602565 lncRNA downstream 116786 67382661 ~ 67382879 (-) True G1403280
TU1602847 lncRNA upstream 14346 67524490 ~ 67524816 (-) True G1403535
TU1602818 lncRNA upstream 61245 67571389 ~ 67572065 (-) True G1403507
TU1602825 lncRNA upstream 62308 67572452 ~ 67572904 (-) True G1403514
TU1602820 lncRNA upstream 63021 67573165 ~ 67598519 (-) True LOC118939572
TU1602877 lncRNA upstream 98726 67608870 ~ 67609295 (-) True LOC110491154
XM_036947601.1 mRNA downstream 7014 67471944 ~ 67492651 (-) False LOC110492592
XM_036947602.1 mRNA downstream 7014 67471944 ~ 67492651 (-) True LOC110492592
XM_036947591.1 mRNA downstream 466620 67021935 ~ 67033045 (-) True LOC110492588
XM_021567004.2 mRNA downstream 466633 67021935 ~ 67033032 (-) False LOC110492588
XM_036947592.1 mRNA downstream 470887 67021935 ~ 67028778 (-) False LOC110492588
XM_036947610.1 mRNA upstream 2354 67512498 ~ 67535761 (-) False LOC110492595
XM_021567021.2 mRNA upstream 2354 67512498 ~ 67571084 (-) False LOC110492595
XM_036947611.1 mRNA upstream 2354 67512498 ~ 67571087 (-) True LOC110492595
XR_005036593.1 mRNA upstream 63577 67573721 ~ 67604966 (-) False LOC118939572
XR_005036594.1 mRNA upstream 63577 67573721 ~ 67604966 (-) False LOC118939572
TU1602806 other downstream 55486 67443421 ~ 67444179 (-) True G1403498
TU1601943 other downstream 1004998 66484901 ~ 66494667 (-) False G1402707
TU1601912 other downstream 1073343 66425551 ~ 66426322 (-) False G1402686
TU1601915 other downstream 1073343 66425551 ~ 66426322 (-) True G1402686
TU1600365 other downstream 1745055 65720507 ~ 65754610 (-) True LOC110492562
TU1604092 other upstream 1281045 68791189 ~ 68795025 (-) True LOC118939478
TU1604570 other upstream 1693142 69203286 ~ 69207158 (-) True G1404974
TU1604630 other upstream 1767683 69277827 ~ 69280359 (-) True G1405016
TU1604821 other upstream 2007611 69517755 ~ 69518113 (-) True G1405172
TU1605761 other upstream 2568513 70078657 ~ 70095541 (-) True G1405917

Expression Profile