RNA id: XM_036947611.1


Basic Information

Item Value
RNA id XM_036947611.1
length 2769
RNA type mRNA
GC content 0.47
exon number 15
gene id LOC110492595
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 67512498 ~ 67571087 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCTCCTATCACTCATACTGGTCATCCTCTAGGTTCGGGTTGAATGGAAATGTATTGGAGTTGGTCTCCATTTACACGTTGAAGGGTCCTTTCATGTGTCAGATCAGCGTGCTGCTGGTTTCAGTTGGTCTCCGGCGGTTCGAGCACTACGAGACAGCCAGTCCGACTGCTTTCGCCACTGTTTTATCCTAAATCAACGGGTGTGATTGACAGCTGTCAGACCTAAGTTGAGATGGACGAGCTCCAGGACGTTCAGCTGACTGAGATCAAGCCACTGCTCACAGATAAGGAGCATGACATCGAGACCTCCCATGGTGTTCTGCACGTGACGATGAGGGGCACCCCCAAGGGCAATAGACCAGTCATCCTCACCTACCATGACATTGGTCTCAACCATAAGTCCTGTTTCAACACACTGTTCAACTTTGAAGACATGCAGGAGATCACATCCCACTTCGCTGTGGTCCACGTGGACGCCCCAGGACAGCAGGAGGGTGCTCCCCCATTCCCCACAGGgtACCAGTACCCTACCATGGATGAGCTGTCTGAGATGCTGCCGTCTGTCATGACTCAGCTGAAGGTGACCAGTGTGATTGGGATTGGAGTTGGCGCTGGAGCCTACATCCTGTCCAGACTGGCTCTCAATGAGCCGGCCCTGGTCGAAGGTCTGGTCCTCATCAATGTGGACCCCTGTGCAAAGGGCTGGATGGACTGGGCTGCCTCCAAGATGTCCGGTTGGACCAGCAACCTGGTGGACATAGTGATGGCCCACCACTTCAGTGATGATGAGCTGTCTGACAACCAGGAGATCACCCAGACGTATCGGCTGCACATCGCCCAGGATATCAACCAGGAAAACCTGGCCCTCTTCTGCAATGCCTACAACAGCCGTCGGGACTTGGAGATTGAGAGGCCTGTCACCGGTCTGACTGACGACACGGTGAACACATTGACATGCACTTCTCTGCTGGTGGTTGGTGACACGTCCCCGGCTGTCGACGCAGTGGTTGAATGCAACTCGAGGTTAAATCCAACCAAAACAACCCTTCTTAAGATGCAAGACTGTGGCGGGCTTCCTCAGGTCATCCAGCCGGGTAAACTAGCGGAGGCCTTCAAATACTTTATCCAGGGAATGGGTTACATGCCCACGGCCAGTATGACCCGCCTGGTGCGTTCTCGTACCCACTCTACCTCCAGCATGGGCTCTGTGGAGGGGAGTCGCAGTCGCACCCACACACAGCTAGAGGGCGCCACTGCTGCCGGCCTGGGTGTCGAACAGGCCAGGCCACAGACCATGGAGGTTTCCTGTTAAAGAACCCAGCCCAGAAAAccaccacctcccccttcctctctgtctccctccctctcttttttcctTTCCCATGCTCAAGGTCAGAGAGGATTGGAATCCTGAGCGGGCGTCTGAAACGTGTTCTGAAAGATAATTTATGAAGACAGAAGCAGTCAGGTTCTCTGCTGTGTTCTCTCACCATTTCCTGTTGTTGTCTGTCTATCATGCCTGTCTGTGCATGACTGCTGTGGTACGGCAACCTGAAAGTCAGTAAGCAGGCGGATGATGCTGCTTgtctggttttccttttgttgtCTACCAGCTCTCCCCATTAAAAGTTGTTTTTTTAATCTTTGAGATTTGAGATATATTTGTATTTAGAACTATTTTGGGTCAGTGTGTCAGTTTAAAGATAACAGATGGAAAGGCATCAGGAGTTTTCTCTTGTAAAGTACTCTATACGGAGTAATGTtgcccctctttctgtctccctctgggGTCTTCCTCACCTTGCTAATTGGTAAGATCAGACCAAATCACACCACCCCTCCTTAGTGATCCATTCCTTAATCAGTCTCATGACACACCAGATtcttttttaattgtttttatgtTGTGATTTGTGGAAAAAAATACCATTTGCTTTCCTGGATTGCAATACGATGTGATAAACTTGCTCCTGCTCTGTACCTTTATACCAAGAATATCTGACAGAATGGCCCTCTAGTAGATGAAACGTAATGGACGTGTCTGTAGAATTGCTTTTGTCTAGATGTATCTAGAAATAGTTGCCTTGTTTGATATTTTCTTTTTCGAGTGAGTTATTTGAAATGGCAGGTCCTGGGTTTTTGATCCCACCCACATTTATTATTGACGGGCAGAGAAAAGaaccaacccactgggcacagatgtcagttcagtgtgtattccatgttggttcaacgtaatttcatcgAAACGATGTGGAAACGACGTTGATTCGACCagcgtgtgcccagtgggaacatTTTACTGTAGTTTATTGAAAACTCAAGTCAAATGCGAAGAGTACCTAAACTAGCCCCAGCTCAGTCAGAGGTGAGTAAATGTCTGCGAATTGAGGTACAGATAACATTACTACCTCTTTCATAAAATAGAACTAAAATATATGAACTTACATTGCTTCCAGTTAGTAGAAAACAGTATGTTTTCCCTcctgattaaataaagatgaGGTGAAAACGACAACGGGTCAGATGCCTGAGGGACTGTGGATTGTGTAATAAATGTTTTTATAGAGTTTCTTATTAATGTTATTAGTTGGTAGTTTTCTCTGTGGTTTTCCTGCATTTCTCTCTGGTTGTACTACAGCTTGGGTGAACACGTGGTGATGATGCATTGGACTCTGTCTGCATAGTATACGGGGTGCTGTTAGTCATACTGTGCTGACTATGTCAATTTGTACTGAATCATAAAATAAAGCTAGAAGCTGTACATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1602811 lncRNA downstream 49554 67462362 ~ 67462944 (-) True G1403503
TU1602812 lncRNA downstream 51096 67460247 ~ 67461402 (-) True G1403504
TU1602786 lncRNA downstream 106330 67405788 ~ 67406168 (-) True G1403478
TU1602785 lncRNA downstream 106945 67405191 ~ 67405553 (-) True G1403477
TU1602565 lncRNA downstream 129619 67382661 ~ 67382879 (-) True G1403280
TU1602818 lncRNA upstream 302 67571389 ~ 67572065 (-) True G1403507
TU1602825 lncRNA upstream 1365 67572452 ~ 67572904 (-) True G1403514
TU1602820 lncRNA upstream 2078 67573165 ~ 67598519 (-) True LOC118939572
TU1602877 lncRNA upstream 37783 67608870 ~ 67609295 (-) True LOC110491154
TU1602895 lncRNA upstream 79017 67650104 ~ 67650362 (-) True G1403583
XM_021567018.2 mRNA downstream 2354 67499665 ~ 67510144 (-) True LOC110492594
XM_036947601.1 mRNA downstream 19847 67471944 ~ 67492651 (-) False LOC110492592
XM_036947602.1 mRNA downstream 19847 67471944 ~ 67492651 (-) True LOC110492592
XM_036947591.1 mRNA downstream 479453 67021935 ~ 67033045 (-) True LOC110492588
XM_021567004.2 mRNA downstream 479466 67021935 ~ 67033032 (-) False LOC110492588
XR_005036593.1 mRNA upstream 2634 67573721 ~ 67604966 (-) False LOC118939572
XR_005036594.1 mRNA upstream 2634 67573721 ~ 67604966 (-) False LOC118939572
XR_005036595.1 mRNA upstream 2634 67573721 ~ 67604966 (-) False LOC118939572
XM_036947612.1 mRNA upstream 27515 67598602 ~ 67604966 (-) False LOC118939572
XM_036947625.1 mRNA upstream 37737 67608824 ~ 67661541 (-) False LOC110491154
TU1602806 other downstream 68319 67443421 ~ 67444179 (-) True G1403498
TU1601943 other downstream 1017831 66484901 ~ 66494667 (-) False G1402707
TU1601912 other downstream 1086176 66425551 ~ 66426322 (-) False G1402686
TU1601915 other downstream 1086176 66425551 ~ 66426322 (-) True G1402686
TU1600365 other downstream 1757888 65720507 ~ 65754610 (-) True LOC110492562
TU1604092 other upstream 1220102 68791189 ~ 68795025 (-) True LOC118939478
TU1604570 other upstream 1632199 69203286 ~ 69207158 (-) True G1404974
TU1604630 other upstream 1706740 69277827 ~ 69280359 (-) True G1405016
TU1604821 other upstream 1946668 69517755 ~ 69518113 (-) True G1405172
TU1605761 other upstream 2507570 70078657 ~ 70095541 (-) True G1405917

Expression Profile