RNA id: XM_036947624.1


Basic Information

Item Value
RNA id XM_036947624.1
length 7362
RNA type mRNA
GC content 0.52
exon number 10
gene id LOC110491154
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 67608824 ~ 67772580 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tataccgcTCAGTTAAATACAGTCCGTTAGGGATCAGATTACATATAAACCAGGACCATGGTGGAGTTTcgtggaggggtgtgtgtgctgTACTGACTTGCACACAGACAGGGCAGGGGTGAGGCAGTACTGTGCTCCAGTTACGTGGAAACGCACATACATAGCTTCAACTAGTGGGAAATCTACTACAATGCAACTCTTATTCCAACTTTTTGCTCATACAATGTGAGGAAGATGGCCGAGACAAGctgTGACTGGGTGGAGATCTTGGAGCCACGCTCGCACGAGCGCATGTACGTGAACCTGGCCTCGGGGGAGTGTGGTTGGGAGCCCCCCCCAGGCGCCGCCGTGCGCCAGTCCGATGGCAGCCAGTGGTGGGAGCTGTTTGACAGCCACAACAAACGCTTCTACTACTACAACAGTGCCAGTCAGCAGACGGTGTGGCACCGGCCCCAGGCCTGCGACATCGTGCCCCTGGCCCAGCTACAGGCCATGAAGAGGAGCTCTGAGACGGGTCTGAGGGGCCCCATCAAGCcccagagagggggaggaggaggggagggccgCCGCGCAGCCCTACCTAACCAGGCCTACCCTATGCCCCCCGCCCAGGACCCTGACAGCAGCGGGAGGTCCACCCCCTCTAAGGGGCTCTGTGACAGCCTGGAGAACAGTAACGACACCCCCAGGGACCCAGGTCAAAGATGGCAGCCAGCTCCGGGATCGAAGGCAGCCATGTTGGTGAAGGTGAACAGCATTGGCAGGAACCAGTCCGTGGTGCCCACTAGCACCCAGCACCTCAACACTCTCAGCCCTGGGAGCCCTGCTGTGTACCAGGTCCACTCAGACAGACCCAGCCCCAGACCCATATCCAGCCCTGCAGGCAAGATGGCTGCCCCTGTGGACCACAAGCAAGCCTTCCACCTGAAGAAGGGAGACAACGGTAACTTCGGCCTGGTGATGCCCTGCACTGGCAGCCAGGTCTACCAGACTCCACAGAGGTGTCAGGCTGGCACCCCCCAGCCCTCCTCCCCCCATTACGGTGCCACTCCGCCCATCTATGATGAACCACCCATGGAAACACCTATCTATGATGAGCCCCCGATGGAGGTGGAGGGGGCCGCCCTCCTGAATAGGTCCTCCACCCCAACCACCAGCCTGCAGAGGGTTCGCCaaccccagacccagacccaccACCAGACCCAGCAGCAACCCAAGCTGCTTCAATACCCAGCCTCTCACCTGGCCTCCAAACACAAGAGGAATCCCTCCGCCACAGAGTACAGCCCCGCTGGACGGGagtgcatcaaacacatggtcaaCGTGGACCCTGCCACCTGCAAGCAGAGCCCCTTATCCCATCCTATCCAGACAGAGCAGGCCCCTGCTCTAGACCCTGACCtgcccccctctccatccccatGCCCAGTCGTGACCCAGCCCAGGCCCAAGGAGGTGAGCCTGGAGAAGAAGCAGTCGTGGCGTCTCCTGGAGACCAGCGTGAGGAAGAACATGGACGTCCGGCACAGCCGGCAGAACAGTGTGGCGTCCCAGGAGTACCCAGCGCCGGCCGCCGTCACCCACCAGGACTCCGGCTACTCCACCGGGCCTTCGCCCAGCTTGAGGAGGAAGAACCGCCGGAGAGCCCTGGGAGGGGGGGCtgggggaacagggcagggccggCCAGGCTCAGTGGGCAGCAGTGGGGAGCTCAGTGCCCTGAATGAGAAGCTGATGGCAGAGATGCGGGTGGTGGTGAGTCGCTCTAACACCCTGCGTGGCAGCAAGGCCAGCCTGGACACTGAGATGTCTGACAGCTCTGTACCTCGGACCCGTTCCCCCCTGGGTTCCCCGAAGAAGTACAGGGGCCGCAGCGCCTCCCGAGAGGACATCAGCGCCAGTAACCACTCTCTGTACCGGACCGGGAGCGGGAGTACCCATGGCGACGTGCCCCTCTCGCCCCTGGCGTCGGAGGGCATGGTGCGTCAGAAACGGACCTATGAGAAGGTGGACACTCTGGAGAAGAGCATCATCAGCCAGAACAGCCTGTCCTCCTCGGAGCCCCACATGTCCCTCTCACAgGCAGGAACACTGGACTCCAAGGCCCAGTCGGAGATCTCGTCACAAGGCGGTGGTAATGGACACAGGGGCACCCCTCATGGAGTCAAAGTGACTGGAGAcaggaggggaggtgggggaggaggaggcggCAGTGTGGGATACCAGTACCCTTACACCACCCTCTGTAAACCTCCTCCAGACACCAACATGGTGGACTGGGCCAGTAAGAACCTGAACCTGCACACGCAGGGCCTGTTCCGCCGCCGCGTCTCCATCGCCAACATGCTCTCCTGGAACAGAGGCTCCATCAAGAAGCCCATGCTGATCACCAGCGACCGCACCGTCAAGAAGGAGGCCTGTGAGATGTTCAAGCTGATTCAGGGCTACATGGGGGACCGTCCAGCCCGGCTGGAGCGCCGTCACACCGCCCTGCTGGTGATCACTAAGTGCTGGGGAATGCAGGCCCTGAGGGATGAGCTGTACGTCCAGCTGGTCAGACAGACCACTGACAACCTGAGCCTGAGGAGCCTGGAGGCCGGCTGGGAATTCATGGCCATCAGCCTGTCCTTCTTCTCCCCCTCGCCCAAGTTCAGAAGCTACCTTGAGGGGTACATCCAGACACACCTGGAGCCCTCCAACGACAAGAAGATCATGCagcacattatggaacaacacgACATGAAGACCAAGAAGAATTCAAAGTCCCGGAAGAAGAGGAAGCAGAACaacgaggaagaggaagagggcCTGCCAATCAGCACTTATGCCAAGTACTGCTACCGCAAGCTGCAGAAGGTCGCCGTCACTGGGGGCAAAAAGGGTCTAAGGAAGCCCACCCTGGAGGAGTTAGACCAGGGGAGGAATGCCATCGTGACCCCTTCCTTGTTCGGCAGTGCCCTGGAGGAGATCATGGAGCGCCAGAGCGAGCTGTTCCCGGAGCGCAGTCTCCCCTGGGTGCAGGTGCAGCTTTCTCAGTGCGTGCTAGCCCTGGGAGGGGCCCAGACAGAGGGAATCTTCAGGGTGCCTGGGGATATTGACGAGGTGAATGCGCTGAAGCTGCAGGTGGATCagtggaatattccagaaaaccTTGGGGACCCCAACGTCCCGGCGTCTCTGCTGAAGCTGTGGTACAGGGAGCTGGAGGAGCCAGTCATCCCTCAGAGCTTCTATCAGCAGTGCATCAGTAACTATGAGGATCCTGAAGCGGCTATCAGAGTGGTACAGTCTCTGCCTGAACTCAGCAGACTGGTGCTCTGCTACTTTATACACTTCTTACAGGTGTTTGCTCAGCCcgtcaatgtgagtaagaccaaGATGGACGTGAATAACCTGGCCATGGTAATGGCTCCCAACTGTCTCCGCTGCCAGTCAGATGACCCACGCGTAATCTTTGAGAACACGAGGAAGGAGATGTCCTTCTTACGCATGCTCATTGTTCACCTGGACACCAGCTTCATCAAGGGCCTCCTCTGAGGCAGCCAACTCTATCCCTCTTCATCAAGGGCCTCCTCTGAGGGAGCCAACTCTATCCCTCTTCATCAAGGGCCTCCTCTGAGGGAGCCAACTCTATCCCTCTTCATCAAGGGCCTCCTCTGAGGGAGCCAACTCTATCCCTCTTTATCAAGGGCATCCTCTGAGGGAGCCAACTATCCCTCTTTATCAAGGGCCTCCTCTGAGGGAGCCAACTCTATCCCTCTTTATCAAGGGCCTCCTCTGAGGGAGCCAACTCTATCCCTCTTCATCAAGGGCCTCCTCTGAGGGAGCCAACTCTATCCCTCTTTATCAAAGGCCTCCTCTGAGGGAGCAAACTCTATCCCTCTTTATCAAGGGCCTCCTCTGAGGGAGCCAACTATCCCTCTTTATCAAAGGCCTCCTCTGAGGGAGCAAACTCTATCCCTCTTTATCAAGGGCCTCCTCTGAGGGAGCCAACTCTATCCCTCTTTATCAAAGGCCTCCTCTGAGGGAGCAAACTCTATCCCTCTTTATCAAGGGCCTCCTCTGAGGGAGCCAACTCTATCCCTCTTTATCAAGGGCCTCCTCTGAGGGAGCCAACTCTATCCCTCTTTATCAAGGGCCTCCTTTGAGGGAGCCAACTCTATCCCTCTTTATCAAGGGCCTCCTCTGAGGGAGCCAACGCTATCCCTCTTTATCAAGGGCCTCCTCTGAGGGGGTCATCTCTATCCCTCTTTATCAAGGGCCTCCTCTTAGGGAGCCAACTCTATCCCTCTTTATCAAGGGCCTCCTCTGAGGGGGTCATCTCTATCCCTCTTTATCAAGGGCCTCCTCTGAGGGGGTCATCTCTTTATCTGTCACCATGCCCTGGAGAGCTGCACTTGTGCATCAGCCCTCAACTATAGCTGCTCTGTCTTTCTATCATACAACTCTACAACTGTCTACCACCTTATTCACAACAAGCCCTCTGTTCCTTCACACTTCTCATCAACCATATCACATCTCAACCCTAGATTCCCTCTGGTTCATGAACACCACAGCCGGAGGAACACAGACAGTGGACTGCACAGACAGTGGACTGCACAGACAGTGGACTGCACAGACAGTGGACTGCACAGACAGGGGACTGCACAGACAGGGGACTGCACAGACAGTGGACTGCACAGACAGTGACCGGGTATCTAGATGGTTTTTCGTGCTCCGAATCATCTTCCCTTATTGTTTGAGACTTTGGGACAAGCTCACATGTGATGGTAGTGGGAGACTGTTTATCCGTTGGAAAGCAGGACATACAGTACACGGTGTTCTTGGGCTCGTGTTAATGtctggagcagaatcagtggaatggtatccaacacacggtttccatggtttccaggtctttgatgccattccatttgctccgttccagccatttattatgagccgtcctcccctcaacagcctcctgtgCTACTGTTTCTGCTCCAAACACTGGACCGTGCTGGCGTGAGATTCAGCATGTGAAGAAGAGCAATCGCAATACGAGACAATTATGCACAAGAAGCATGTGTGCAGGGAAAAGTCCAGAGACAAATGTGTAAATATGATGTTGTTTTTATTGTGGGGGGGAAATTGTTCCTGCTTTGAGTGCCACATATGTATCTGACTGCCATGGTAGTGAATGATGATGATGTCTCATCACGTTTAGACATGACGAATTGAGGGGGAACCCACTACAGACAGAATCTGTATTATTCCGTTCTCTTTTCCTTTATCACAGTGTGTCTGCAAGCAACGATTTCCTTCGCATTTCATTTGGAACGCTTTTTTGACTAATTTTAATATGAATTCTGTCTGTATTGCCAGAGCTGCAGGATGAGTTGATAGTAAAGGTTTAGACTTCTCCACTGGCCGCGGAGACAGATTCCCCCTCTGggcaacaaaaaatatatatatttatttctaaACAGTTTCTCTTAAAATAAAAATGGTTACCCATCAGTTAGGCAGagatgtgtgtacatgtgtgagagacagagtctCGGATTAAAATGAGGAAAACACATTTCTATTCTCCTcagtggtggagggggggggggggggggctagggaACATTTGTGGAGCACTTTCTGCTGTTTTCCTCCAGACAATTACATTTGACTTATTTTGGAGAGGGCCAAAAATATTTTTATCCTCCCTTCAGTGGAACACAATTATACCTTTGATGGAGCTTGCAAAAATGCTAAATTTAGCTATTAGCAGGTCAGGGGAAAAGGATGCAGGAGAAAATGAGAGCGCTGCTGCTGCCTGGACCTAAAGCCTTAGCCACGCAGACAGTGGTGGATTTACAGTGCAAGCCAAAGGGAGAGGCAATCTGGCAGTGGTTTTAGGGTCTGGGGGTACATTAGTTTAGTGCCATATACTGGGAGGACAAAAAACAAACCGATTTAGTATTTTTAGACAATATTGCCTAACAAGGACTTTCCTATTCCTTAAAATCATATGCCACATAAGGAGAAGACTGTTTAAAATCCATATTTCAGCTGTCTTAAGGGCCATGCGGTTTCCATTATATTTAGCAGTGTGGTCAGGGTTTAGGTTTTAATGCCCCACAAGTTTTCTCTGTGTCTACCTCATCTTAGTGATGGGGTCTGTGCTGCGAGGCTTGTGTGTATGTATACGCACGTGTATGTACGTACTTgcacatcagtgtgtgtgtgtttgccgaCTACGCGTGTGTGTCAactgtaaatgtgtgtgtttgtgtggtaggAGTCTGTTCATATAGCATATACTCCGTAGTTACTGGAAGCTGGAGCCCCTAAATTAGAGGGTGTGTTTAGCCAGAAAATTGCATCTAGAGGTTATATGGTTGTTAACCCCTTTTCTGCACTCACAGCATTTACAGCGGCCGCTCCTTCGTTTCCTTTATTAATGCTTTACTGTTCGTCTTACGAAAACCCAAGCCACCAGTTGGGTACTCCATAGCCACATCAGAGGACACTACCCAGCTTTCTCCTCACCTCTAGCCAGCAGCGGCAGCTCTGAGGTGGGGTGGAGGATGGCTATGCAGTGCCAGTAGTTCTGGGAGTGCATGAGAGATATATACTGAGCCTGCAGAACGAGGAGGGAGAATTCAGGGGCCAGCAGTCACTGGTCTATTGCTAAAGTTCTTGTAATTGTATCACAATGTGATAGTGTTCTTCTAGAATCTATACACAGACCTTTAATAAAACAGCTGTGGACCTGTAACTCTTAAGACACTGAACTCCTGAAGCTCTGGTTTAACTCTTCTCCATCCTGTGTTCTTCAGTGGCTGatgattcatatatatatatatatataaatatatatacagtattatatatgAATAGTAGCATGGTCTTTGGTCACTGAATGTTCAAAACAATGATGGTTATAATAACATGATTCCACAATATTGTGAAAAAGAGTTCCATTCTTCAGTAATGTCATTATTCTCTTAGTTTGACATCAATGCTTACGGTGTGAGTCAGCGGTGTAATTTCTTGATTTGATCAAATCATTTTTGACTCTTATTTTTTTTTCCTAACTGGAATGAGTGTTGATAATGTTTGTTGAGATGATAAACTGAAGTGTGTCATGTTTAGACTGTGTTTGACGACAGTTACAACATGTGTGTGTCCATTGTGCTTCCTCTTCCCTGGCCCTCACATGATGGGTGCTATTGACTCGTTGTAAATATGCTTGCAGGTCTTTTgggtatgttggtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcgaaaACAAGAAAAACAGCAACGGTGATTGTGTGGATGGATTTATTTCATAAATAATTGAAAAAATAAAGTTTGTAAACAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1602820 lncRNA downstream 10305 67573165 ~ 67598519 (-) True LOC118939572
TU1602825 lncRNA downstream 35920 67572452 ~ 67572904 (-) True G1403514
TU1602818 lncRNA downstream 36759 67571389 ~ 67572065 (-) True G1403507
TU1602847 lncRNA downstream 84008 67524490 ~ 67524816 (-) True G1403535
TU1602839 lncRNA downstream 88910 67508359 ~ 67519914 (-) True G1403527
TU1603163 lncRNA upstream 981 67773561 ~ 67775461 (-) True LOC110491155
TU1603168 lncRNA upstream 11740 67784320 ~ 67785684 (-) False G1403815
TU1603169 lncRNA upstream 11740 67784320 ~ 67784767 (-) True G1403815
TU1603220 lncRNA upstream 120423 67893003 ~ 67894154 (-) True G1403863
TU1603229 lncRNA upstream 140099 67912679 ~ 67913023 (-) True G1403872
XR_005036593.1 mRNA downstream 3858 67573721 ~ 67604966 (-) False LOC118939572
XR_005036594.1 mRNA downstream 3858 67573721 ~ 67604966 (-) False LOC118939572
XR_005036595.1 mRNA downstream 3858 67573721 ~ 67604966 (-) False LOC118939572
XM_036947612.1 mRNA downstream 3858 67598602 ~ 67604966 (-) False LOC118939572
XM_036947611.1 mRNA downstream 37737 67512498 ~ 67571087 (-) True LOC110492595
XM_036947628.1 mRNA upstream 690 67773270 ~ 67875889 (-) False LOC110491155
XM_036947627.1 mRNA upstream 690 67773270 ~ 68040540 (-) False LOC110491155
XM_036947631.1 mRNA upstream 4696 67777276 ~ 68040540 (-) False LOC110491155
XM_036947629.1 mRNA upstream 4696 67777276 ~ 68040541 (-) False LOC110491155
XM_036947630.1 mRNA upstream 4719 67777299 ~ 68040541 (-) False LOC110491155
TU1602806 other downstream 164645 67443421 ~ 67444179 (-) True G1403498
TU1601943 other downstream 1114157 66484901 ~ 66494667 (-) False G1402707
TU1601912 other downstream 1182502 66425551 ~ 66426322 (-) False G1402686
TU1601915 other downstream 1182502 66425551 ~ 66426322 (-) True G1402686
TU1600365 other downstream 1854214 65720507 ~ 65754610 (-) True LOC110492562
TU1604092 other upstream 1018609 68791189 ~ 68795025 (-) True LOC118939478
TU1604570 other upstream 1430706 69203286 ~ 69207158 (-) True G1404974
TU1604630 other upstream 1505247 69277827 ~ 69280359 (-) True G1405016
TU1604821 other upstream 1745175 69517755 ~ 69518113 (-) True G1405172
TU1605761 other upstream 2306077 70078657 ~ 70095541 (-) True G1405917

Expression Profile