RNA id: XM_036947630.1


Basic Information

Item Value
RNA id XM_036947630.1
length 4043
RNA type mRNA
GC content 0.54
exon number 21
gene id LOC110491155
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 67773270 ~ 68040541 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agggagagagagagatgtaacttTGGCTAGAgggactttttttttcttcatttttaactccccctccccttttcctcctcgtttttctgtgtgtctgtctatattaGTGTTTTTGATTCTCTGTACGCCTGAGAGCGTGGtcagtcagagagggagagagaaaaagagagggagagagggagagaggagcagagtgagAGTAAAACAGAGCAGGAaaaggacagacagagaagaggagggaacaGTCCATGGTAATGTGTGCCTGCTCGTCCCAGTCCAGCTCAGTGCAgcgccccctcctcctccagctcTACTGGGTCAGTACCCTGGGACAGCACCTGCTcccccgacagacagacagactctcagGACCCGCAGCTGTGTGAGCCTTGAGTCCAGCCGCTCCTCCACACATAAAGAGACTCCGACCATCCCCAGAGAACCCAACCTTCCATTCACAGGAGTCTTAGCGGTGGCTGCAGCAGAGTGATCCAGTAGTAGCAGGGTAAGATAAGTTCGAGGTCAAGATGGCGGGGCTGCTGCCCTCCGCCAACCGTTACCTCCTCTTGCTCCTGGGGGTTCTGTCTGTGGCCCACGCCTCCATCTTCCTCAAGGCCTCCTTCCAGAGAGACCGCCGTAACATCAGGCCCAACATCATCCTCATTCTCACTGATGACCAGGACATGGAGCTCGGCTCCATGCAGGTCATGAATAAGACACGTGGTATCATGGAGCAGGGCGGGACTCACTTCTCCAACGCCTTTGTGACCACGCCCATGTGCTGTCCTTCACGCTCCTCCATGTTGACGGGGAAGTACGTTCACAACCACAACACCTACACCAACAATGAGAACTGTTCCTCCCCCTCCTGGCAGGCCCAGCACGAGACTAGGACCTTCGGAGTGTACCTCAACAACACTGGCTACAGGACAGGCTTCTTTGGGAAGTACCTGAATGAGTACAACGGTTCCTATATTCCTCCTGGGTGGAGAGAGTGGGTGGGGCTGGTCAAGAACTCCCGCTTCTACAACTACACCCTGTGCAGGAATGGAGTCCGCGAGAAACATGGCTGCGAGTACCCTAAGGACTACTTTACTGACCTCATCACAGAGGATGGCATCAACTACTTCCGCTCGTCTAAGAGGATGTACCCTCACCGGccagtgatgatggtgatgagccATGCAGCCCCCCATGGGCCAGAAGACTCAGCACCCCAGTACAGCACTGCCTTTCCCAACGCATCCCAGCACATCACTCCCAGCTACAACTATGCCCCGAACCCGGACAAGCACTGGATCATGAGTTACACTGGTTCCATGAAGCCCATCCACATGGAGTTCACCAACATGCTACAGAGGAAGAGGCTGCAGACCCTGCTCTCTGTGGACGACAGCGTGGAGAAGGTGTATAACATGCTGGCTGAGACTGGAGAACTGGACAACACATATATCATCTACACAGCTGACCACGGCTACCACATTGGTCAGTTTGGCCTGGTCAAGGGCAAGTCCATGCCCTACGAGTTTGACATTCGAGTACCCTTCTACATCCGAGGGCCCAACGTGGAGGCAGGAGCCAGCAACCCTCACGTGGTGCTGAACATTGACCTGGCGCCCACCATCCTGGACATCGCTGGCATGGACGTGCCTCCGGACATGGACGGCAAGTCCATCCTCAAACTGCTGGACATAGAGAGACCAGTCAACAGGTTCCAGGTGAATAAGAAGGGGAAGGTGTGGAGAGACTCGTTCCTGGTGGAAAGAGGGAAGTTGCTCCACATGCGTGATGCGTCTTCAGGGAAGGACGTGGCCCAGGAGGAGAACTTCCTGCCTAAGTACCAGCGGGTCAAGGACCTGTGTCAGAGAACAGAGTACCAGACACCCTGCCAACAGCTGGGACAGaAGTGGCAGTGTGTTGAAGATGCTACGGGGAAACTGAGGCTGTATAAGTGTAAGGGCATCACCAGCATGTCTGCAGAACGGAAGGAGGGCCCTGCCAACATCAGGTCCCAATTTTACCCCCAGCGCGAAGCAAAGCACATCACAGAGCGCAACACAGAGCCCGAAGGCTGCAATTGTGACCAGTTCCCTAGCTTCAGACTCAGTGCCTTCAAGAAGAAAAAGTTTCTTTCCAAGATGAAGATGAAGGCCGTCAAGAGCTATGCCCGTAACCGTTCTGCTCGCGCCGTGGAGATGGAGATAGGAGGGGAACTGTATGCTGTAGACTTGGGGGATGGCTACCATCCTGTACTGGCCCCCAAGAACCTCAGCGAGACTGGGGCCCCGGGGCCACGCGACGACACTGAGGACGACTTCAGTGGCATGGGAttcaccatcagtcccaggactAGCAGCAACAGTCTGGCTATAGTACCTTCTGACATCAAAGTCACACACAGATGCTCCATCCTGGCCGATGACACAGTGAAGTGTGACACAGGGATCTATAAGTCTGTGCAGGCCTGGAAGGACCACAAACTCCACATCGACCACGAGATTGAGACCCTGCAGACCAAGATCAAGAATCTGAGAGAAGTCAGGGGTCATCTGAAGAAGGCCCGCCCAGAGGAGTGTGACTGTCTCCGCTACATctaCCAGTCTAAGTACAAGAGTAAGCTTAGGTACAAAGGAAGCAGCATTCACCCATTCAGGAAGGGTCAGGATAAGGATAACAAGGCGTGGCTGCTGAAGGaccagaagaggaggaagaagatgagGAAGCTGCTGAAACGTCTGAGGAACAACGACACCTGTAGCATGCCTGGTCTAACCTGCTTCACCCACGACAACCAGCACTGGCAGACCGCCCCCTTCTGGACAATGGGTCCATTCTGTGCCTGCACCAGTGCCAACAACAACACCTACTGGTGCGTGAGGACCATCAACGAAACTCACAACTTCCTGTTCTGTGAGTTTGCGACTGGCTTCCTGGAGTACTTTGACCTCAACACAGATCCCTACCAGctGATGAATGCTGTGAACACACTGGACCGAACCGTCCTAAATCAGCTCCACGTTCAACTCATGGAGCTCCGCAGCTGCAAGGGTCACAAGCAGTGCAACCCCCGTACCCGCAACCTGGAGCTGGGAGGTAAAGAGCGAAGCAGCTATGATGAATACAGAGGGCGTCATCCACCCCCACCGCCCAGCACATCTGCCTTAGTCATCTAATCATCTCTACCTGTAGAGGGCGCCATCCACCCCCACTGCCCAGCGCATCTGCCTTAGTCATCTAATCATCTCTACCTGTAGAGGGCGCCATCCACCCCCACCGCCCAGCGCATCTGCCTTAGTCATCTAATCATCTCTACCTGTAGAGGGCGCCATCCACCGCCCAGCACATCTGCCTTAGTCATCTAATCATCTCTACCTGTAGAGGGCGCCATCCACCCCCACCGCCCAGCACATCTGCCTTAGTCATCTAATCATCTCTACCTGTAGAGGGCGCCATCCACCGCCCAGCACATCTGCCTTAGTCATCTAATCATCTCTACCTGTAGAGGGCGCCATCCACCCCCACCGCCCAGCACATCTGCCTTAGTCATCTAATCATCTCTACCTGTAGAGGGCGCCATCCACCCCCACCGCCCAGCGCATCTGCCTTGGTTGACTCTCACTGTTCATAAGACTGCAGTGCCTCACAatgtctctcactctttctgaTACTCTGCTGTCCATGTGTCTTGTCTGTTTCTCCATGTAGCTGCCTCATAAACTAGTGTGAATGTCAGAGAATGAACCCATTCAAGCATTCATATAGAATAGAATACTACTCTGTCCTGGGACCAGTTTACTGGGAGCAGTGTTCACGTGGTGATGATGAGGAGAGTACAGACACAACGGGAGACAGAGGTTTGCTGTGGATGACACTGTTTTGTCTGTGTGATCTTGTCTCATCAGAGGACAGATTTGGGAAGGCTGGGAGGGATAGGGTCCAGGAGGCGACAGTGGCCCCGTCAGAAGCACCCAGTGCAGGAGGAACGGGAATGGACTGGTCAGAACTTGAACCCTTGTACAGACTTGACAAGCACGCGTATGATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1603163 lncRNA downstream 1838 67773561 ~ 67775461 (-) True LOC110491155
TU1602982 lncRNA downstream 26773 67750306 ~ 67750526 (-) True G1403649
TU1602975 lncRNA downstream 36362 67740565 ~ 67740937 (-) True G1403642
TU1602973 lncRNA downstream 37834 67739099 ~ 67739465 (-) True G1403640
TU1602970 lncRNA downstream 39751 67737314 ~ 67737548 (-) True G1403637
TU1603316 lncRNA upstream 3746 68044287 ~ 68045398 (-) True G1403948
TU1603334 lncRNA upstream 38114 68078655 ~ 68146780 (-) True G1403966
TU1603353 lncRNA upstream 72392 68112933 ~ 68113638 (-) True G1403981
TU1603367 lncRNA upstream 100160 68140701 ~ 68142315 (-) True G1403991
TU1603371 lncRNA upstream 106760 68147301 ~ 68147511 (-) True G1403994
XM_036947624.1 mRNA downstream 4719 67608824 ~ 67772580 (-) False LOC110491154
XM_036947626.1 mRNA downstream 100709 67608824 ~ 67676590 (-) False LOC110491154
XM_036947625.1 mRNA downstream 115758 67608824 ~ 67661541 (-) False LOC110491154
XR_005036595.1 mRNA downstream 172333 67573721 ~ 67604966 (-) False LOC118939572
LOC118939464 mRNA upstream 120266 68160807 ~ 68163967 (-) True LOC118939464
XM_036947645.1 mRNA upstream 129485 68170026 ~ 68176211 (-) False LOC110492614
XM_036947646.1 mRNA upstream 129485 68170026 ~ 68176211 (-) True LOC110492614
NM_001124722.1 mRNA upstream 142684 68183225 ~ 68184419 (-) True id1
XM_036947641.1 mRNA upstream 208504 68249045 ~ 68265345 (-) False LOC110492616
TU1602806 other downstream 333120 67443421 ~ 67444179 (-) True G1403498
TU1601943 other downstream 1282632 66484901 ~ 66494667 (-) False G1402707
TU1601912 other downstream 1350977 66425551 ~ 66426322 (-) False G1402686
TU1601915 other downstream 1350977 66425551 ~ 66426322 (-) True G1402686
TU1600365 other downstream 2022689 65720507 ~ 65754610 (-) True LOC110492562
TU1604092 other upstream 750648 68791189 ~ 68795025 (-) True LOC118939478
TU1604570 other upstream 1162745 69203286 ~ 69207158 (-) True G1404974
TU1604630 other upstream 1237286 69277827 ~ 69280359 (-) True G1405016
TU1604821 other upstream 1477214 69517755 ~ 69518113 (-) True G1405172
TU1605761 other upstream 2038116 70078657 ~ 70095541 (-) True G1405917

Expression Profile