RNA id: XM_036947645.1


Basic Information

Item Value
RNA id XM_036947645.1
length 1827
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC110492614
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 68170026 ~ 68176211 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCCCCCCGCCATTAACGTAATCGAAGAATAAGACAGCCTGCTGTGGTGTTTCTTGTGTTCATTTGGGTCAGTTGTTCTAATCTTTGATTTCAGTGTTTTGCTATTGGAGAAGGACAACAGGCATGGGGGAAGCCGAGCTTGTTCCAGCTGACGGTAAACAAGCAGAGTCGGGCATCAGTACCGTCGAAGACTCGGTCGTATGGAGTCAAGAAGTCGAGGTGTGCCTGTTCCATGCGATGCTAGGTCACAAACCCGTAGGGGTAAATCGCCACTTTCACATGATCTGCATCCGGGATAAATTCAGTCAGAATATTGGGAGGCAAGTGTCATCAAAGGTGATCTGGGACCACCTGGGAACTATGTATGACATGTCGGCCTTGCACGAGTCAGAAATATTGCCATTTCCCAACTCAGAGAAGAGCTTCAATCTTCCAGAGGAGATGATTCAAAAAGTAAAAGAAGGTAAACTGGTGTCTGAGGACGACATGAAAGACGAGTTGAAAGAAGAACGAGACTCCCCAGCCACGCATGAAGAAGgcAGCAACTCCTCGGTGAAGATGACAGAGAGGGCCGTCAGcaaagacaaggagagagacagagacagagagaaaggttcCTCTGAGGGTGGCCCAGGGAAGGAGGCAGCAGACAAGAGGAAGAGGAATCGTGCAACTGAGAAGGTACTCAACTCCAGCAGCAACCCGTCCAGCCCCGGTGGAGCCAAGCGGAGAAGGACGTAGGCCAAGTCACCAGGAGACGCCCTCAAGATATCAGCCGCTGCAGAGAGCAGGAGACcccagggggaggaggggagacctGGGACTGGAGAGACTCATCTGTGAAGCCtggaaggaagggggagagactTAGGACTGGAGAGACTCATCTGTGAAGCCTGGAGGGAAacgggagggagggtgagagagtggcGTTTGGAGTCAGACAATAGAGAAGCTATTTGGACAATGCAGAATTTGTGCACAGGTATCCAGGAGACGAAATTAAGAACTTTCAGCCCCACAGAAGCTGCAATTTTAGACTTATGTAATGTTCTCCGAACATCTAGAATGATGTATAATTTTCCCACTGCCACACAATCTCTGAAAACAACACCGCAATAGCAATGTGAAGACCAAACTGACTCGTATTGGTCATGATTATCAATATACTGTCACAGCAGCGGAGGTTTTTTGGACAATCCTCCAGTCCTCGGCTCTGGATGAGAGGCCAGCAGCCATGTTTAGTAATATTGACACAATTCAATCAGACACGTTATCAATGACATCAGAATGAGCGTAATGGTTCTAGTGCTTTGTGTTCAGGCTTGTGTTATTGTGAAGTTATCCTGTTTGGCTTTGGAGAAATGCAGGACTACTAAATCACAGCAATACACTGTATTAGTGGCTGGACGCTTGCTCTAattgtcttgttgttgttgtgtgttctgaTTTGTTTCAAGTTGTTGTAAACACATGCATAGAGTAGCTCATCCAGCTCTTCCAATAACTGCCAACCAGATTGTTATTGTACCTCGTCTGTATAAAATGTAGCTGCAATTTGTGCAAATTGTCGGTCATTGTCCCCTTTTTTCCTACAGTCACAGTCTTCTGTATTTTATCCGTAGGGATTATTGAATGTGCATGTTTTGGtaattgctaaaaaaaaaaaagtattttttttgtcCGTGTTAAAGACAGACCTTTGCGAATATAATAAACATGTGTAGCTGTAGTCTCCATCCCATTTGAGATCCCTTTTGTTATTCTCTATTTATTGGACATGTCATATTTTTAAAGACTATGTCCCATTAAATGATTTTTGACGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1603399 lncRNA downstream 15559 68154260 ~ 68154467 (-) True G1404017
TU1603398 lncRNA downstream 16714 68153096 ~ 68153312 (-) True G1404016
TU1603376 lncRNA downstream 18399 68151314 ~ 68151627 (-) True G1403999
TU1603371 lncRNA downstream 22515 68147301 ~ 68147511 (-) True G1403994
TU1603367 lncRNA downstream 27711 68140701 ~ 68142315 (-) True G1403991
TU1603413 lncRNA upstream 9148 68185359 ~ 68185640 (-) True G1404031
TU1603418 lncRNA upstream 13814 68190025 ~ 68190262 (-) True G1404035
TU1603443 lncRNA upstream 37080 68213291 ~ 68214106 (-) False G1404059
TU1603445 lncRNA upstream 37080 68213291 ~ 68214106 (-) False G1404059
TU1603446 lncRNA upstream 37080 68213291 ~ 68214106 (-) True G1404059
LOC118939464 mRNA downstream 6059 68160807 ~ 68163967 (-) True LOC118939464
XM_036947629.1 mRNA downstream 129485 67777276 ~ 68040541 (-) False LOC110491155
XM_036947630.1 mRNA downstream 129485 67777299 ~ 68040541 (-) False LOC110491155
XM_036947627.1 mRNA downstream 129486 67773270 ~ 68040540 (-) False LOC110491155
XM_036947631.1 mRNA downstream 129486 67777276 ~ 68040540 (-) False LOC110491155
NM_001124722.1 mRNA upstream 7014 68183225 ~ 68184419 (-) True id1
XM_036947641.1 mRNA upstream 72834 68249045 ~ 68265345 (-) False LOC110492616
XM_036947643.1 mRNA upstream 72834 68249045 ~ 68265361 (-) True LOC110492616
XR_005036608.1 mRNA upstream 89226 68265437 ~ 68272147 (-) False LOC110492615
XM_021567043.2 mRNA upstream 89230 68265441 ~ 68272147 (-) True LOC110492615
TU1602806 other downstream 725847 67443421 ~ 67444179 (-) True G1403498
TU1601943 other downstream 1675359 66484901 ~ 66494667 (-) False G1402707
TU1601912 other downstream 1743704 66425551 ~ 66426322 (-) False G1402686
TU1601915 other downstream 1743704 66425551 ~ 66426322 (-) True G1402686
TU1600365 other downstream 2415416 65720507 ~ 65754610 (-) True LOC110492562
TU1604092 other upstream 614978 68791189 ~ 68795025 (-) True LOC118939478
TU1604570 other upstream 1027075 69203286 ~ 69207158 (-) True G1404974
TU1604630 other upstream 1101616 69277827 ~ 69280359 (-) True G1405016
TU1604821 other upstream 1341544 69517755 ~ 69518113 (-) True G1405172
TU1605761 other upstream 1902446 70078657 ~ 70095541 (-) True G1405917

Expression Profile