RNA id: XM_036947643.1


Basic Information

Item Value
RNA id XM_036947643.1
length 2747
RNA type mRNA
GC content 0.45
exon number 12
gene id LOC110492616
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 68249045 ~ 68265361 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAAACGATATTGACAAGTGAACTAACAAGGAAGAGGCTTGTCAATTGCCAGAGTTAGGAAACGTGGCCTTAGCAAAGGAGAATCCAACATTAATAGAAACAAGCTGTTTTGATAGGCGGCAAATAGCGTACACGACTCGGTTGGGTTGGTGAACAACTTGCAAACATGGCCGATATTAATCAAGGATCGGTCTTACCTAGCGAAACTTCACCTCCAGCTCTGGACGGACTGAATGCAACCGACTCCAATGGTACCGACGCTGTCAACGCAACAGTGGCCAAGTTTGTGGCGACACCGGAGGGAACAGCACTGGCATATGGCAGCCTTGTGTTCATGGCTCTGTTGCCCATCTTCTTCGGTGCGCTGCGGTCCGTCAGCTGCGGCAAAAGCAAGAACTCCTCAGACATGCCAGAGACCATCACAGGCAGAGATGCTGCACGGTTCCCCATCATTGCCAGCTGCACCCTTTTCGGCCTCTATCTCTTCTTCAAAATTTTCTCTCAAGAGTACATCAACTTGCTGCTATCAATGTATTTCTTTGTCCTGGGGATTTTGGCACTGGCTCATACAATGAGTCCTTTCATGAACAGGATCTTCCCTGCCAACATCCCCATCAAGCAGTACCAGCTGCTCTTCACTCAGGGCTCGGGAGAGACCAAAGAAGAGATGGTCAACTATGAGTTTGACACCAAGGACATGATCTGCCTGGTCATCAGCACTGTGGTTGGGGTCTGGTACATCCTCAAGAAGCACTGGATTGCCAACAACCTCTTTGGCCTGGCGTTCGCACTGAATGGGGTGGAGCTTCTGCACCTGAACAACATCAGTACTGGCTGTATCCTGCTGGGGGGGCTGTTTGTGTATGATGTCTTCTGGGTATTTGGCACCAATGTCATGGTTACTGTGGCCAAGTCGTTCGAGGCACCCATTAAGTTGGTGTTTCCCCAGGACCTGCTGGAGAAGGGTCTGGGTGCCAGTCAATTTGCAATGCTGGGGCTGGGAGATATTGTCATTCCAGGTATCTTCATTGCTTTACTTCTCCGCTTTGATGTCAGTCTAAAGAAGAACACCAGGACCTACTTCCACACCAGCTTCCTGGCCTACATCTTTGGCTTGGGCCTGACCATCTGGGTCATGCACACCTTTAAACACGCCCAGcCTGCCTTGCTGTACCTGGTCCCAGCCTGTATTGGATTCCCATTGGTTGTAGCTCTGTTGAAAGGAGAACTGACTGAGATGTTCAGGTACGAGGAAGTGTCTGCGGAAGATATTGCTGCTAAAGAAGGGACTACACAGGTTGAGAAAAAAGACAAATGACGACCGAGTTCCTACCAGGTTGTCCGTCACTCTCTGGTACCACGTTCACAGCAGCCCTCCTGTCTATACACATCCTAGGAGGGTGTTCATGTTTCCCTGGAGTTGTGTGCTGTACAAGGAAGtggatgatttaaaaaaaaattaaataactgTTATAACATTGGGAAATGTTGTAGTTTAAGTGTTTGTAAAAGAGCTTTTTGGTGCCTATGTTTTCgttcttgttttgtatttctttcccTTTTGCATTCTCatatttcttgtttttatttcatttgattCGCCAGTATTTTAAACTCAtatgttttactttttttttatttttgggtgaATCTGAGATCActggaagctgaacatttttTAGAAATTGCTCTCGGGATACTCAGATAACAGCGGTCAAGTTTGGTGGTTTAGTTTGTTTCTGTCTTGGTTTGCTAAAGGAATCCCTTCCTCATCGAGAATGAAACATCATTGGACGATGTAAAGGAGGCTGGATATGAGTCTACAATTGTCACACACATGCTTTAGAAGGAGCTTCATCTTTACTACTGTCCTCTGGCCTGGAAGTAGGCCTAAATACCTACCATTCTCAAGGTATAATTGCACCAATTTGGTAGTGCATGTAATTACATGCCGCCTGACTTGTTGGCCAGTGTAAAGGTAATAATAGCTTAGAATTCAGATCAGCGTATTTAAGGAAGTAACTAAACTTGTGCAATCATGATATCACATTTTGATATTTGCTATGACACAATGAGATTTCTGAGAGTCTTACTCTGTCATGCTCAGTCATATCCAATCAGAAGAGTCTGTTATATGGAAATAATGTATTAGTATAGGAGTTGGTTACGTCCCGTGCAGTGACTGAGCGGTACCTGCAGATGGAGACCGTGTCGACAGAACCATATCTCCTCGGAGAGAGGAGACCCAGGGGATCAAATGATTCCTCTTGCTTTAGGTTGGGGTTGTTTTGCTTTGATTATGTAGAAGTTCTGTCCTTTTGCAGAACGGAGCCGTGTGTTTCAGCCCGGGGGGGTTGTGTTAGGGATTTAAGATTGAGCAGTTCTGTAGTAATGTGTTTAGGTGAAGTTCAGTAACCCTGCTATCAtttcaaatatacattttcttttCTCCTATTCTACTTGTGTAATTCAAAGTTTATTATGAGCCTttgtttattttcaataaatgatGGTGTATATCACCGTAGAGAAGCATAACCAATGTGTAGGTCTTTAGTTTTGTGTTGAAGTAGCCACCCACACATGGGTTTTTCTGGTTATTTAGAATAAATTCTACAGGGAAGTGCATTCTGGGCTGTAGGAGGGATGGCGCGGAGAGCACATCTGATGGACCACTCGAGGGAGATTAGGATGTTACAGCGCAGAAAGcatttagaccccttgacctaTTAAAATAAAAACCTCTA

Function

GO: NA

KEGG:

id description
K09595 HM13; minor histocompatibility antigen H13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1603448 lncRNA downstream 32797 68216018 ~ 68216248 (-) True G1404061
TU1603443 lncRNA downstream 34939 68213291 ~ 68214106 (-) False G1404059
TU1603445 lncRNA downstream 34939 68213291 ~ 68214106 (-) False G1404059
TU1603446 lncRNA downstream 34939 68213291 ~ 68214106 (-) True G1404059
TU1603418 lncRNA downstream 58783 68190025 ~ 68190262 (-) True G1404035
TU1603815 lncRNA upstream 16631 68281992 ~ 68335689 (-) True G1404348
TU1603836 lncRNA upstream 60370 68325731 ~ 68326012 (-) True G1404367
TU1603837 lncRNA upstream 62285 68327646 ~ 68327903 (-) True G1404368
TU1603842 lncRNA upstream 69180 68334541 ~ 68334953 (-) True G1404373
TU1603854 lncRNA upstream 94012 68359373 ~ 68359652 (-) True G1404385
NM_001124722.1 mRNA downstream 64626 68183225 ~ 68184419 (-) True id1
XM_036947645.1 mRNA downstream 72834 68170026 ~ 68176211 (-) False LOC110492614
XM_036947646.1 mRNA downstream 72834 68170026 ~ 68176211 (-) True LOC110492614
LOC118939464 mRNA downstream 85078 68160807 ~ 68163967 (-) True LOC118939464
XM_036947630.1 mRNA downstream 208504 67777299 ~ 68040541 (-) False LOC110491155
XR_005036608.1 mRNA upstream 76 68265437 ~ 68272147 (-) False LOC110492615
XM_021567043.2 mRNA upstream 80 68265441 ~ 68272147 (-) True LOC110492615
XM_036947618.1 mRNA upstream 13993 68279354 ~ 68336933 (-) False LOC110492618
XM_036947613.1 mRNA upstream 13993 68279354 ~ 68336934 (-) False LOC110492618
XM_036947614.1 mRNA upstream 13993 68279354 ~ 68336934 (-) False LOC110492618
TU1602806 other downstream 804866 67443421 ~ 67444179 (-) True G1403498
TU1601943 other downstream 1754378 66484901 ~ 66494667 (-) False G1402707
TU1601912 other downstream 1822723 66425551 ~ 66426322 (-) False G1402686
TU1601915 other downstream 1822723 66425551 ~ 66426322 (-) True G1402686
TU1600365 other downstream 2494435 65720507 ~ 65754610 (-) True LOC110492562
TU1604092 other upstream 525828 68791189 ~ 68795025 (-) True LOC118939478
TU1604570 other upstream 937925 69203286 ~ 69207158 (-) True G1404974
TU1604630 other upstream 1012466 69277827 ~ 69280359 (-) True G1405016
TU1604821 other upstream 1252394 69517755 ~ 69518113 (-) True G1405172
TU1605761 other upstream 1813296 70078657 ~ 70095541 (-) True G1405917

Expression Profile