RNA id: XM_036947616.1


Basic Information

Item Value
RNA id XM_036947616.1
length 8987
RNA type mRNA
GC content 0.51
exon number 58
gene id LOC110492618
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 68279354 ~ 68336936 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGGCAAGAGAGGGTATAACGCAATCTTTCTCTTGCACTTTCTACAGTCAGAAACAGGCAACTGAGAACAAAACTGAACCAAGAACAGATAACTGAGGAGTTATCAAGATAACACTTCCTGGTTCCAATTCTATCTGTCTTCAGGTGCAGTGTCAACATGAGGACTTCGCTGACACATTTGGACTTTCTCTACTTTCATTAACATCGGGTTGTCATTGTTCATTTACggttttaaactttatttaattaaacaatttaaactatAATTTGAACTACATTGTCCTCCGTGCATTCCAACGAAATCTTCATTAGTTCGAATGAGAGTTCTTAGCCCTCAGTGCACGAGGAGGAAGATCAGATACGAGTAGCGCTTCAAAAAGTCGCAGCAGTCAAGTGGAGACTACAGAAGAGGATACGTGTATTTCAGTTGATAATTGTCAACGCGAAAGACACCGAAGATGTCGGATTCAATGTCCAGCTTTTTGCACATTGGGGACATCGTTTCCCTTTACGCGGAGGGCTCTGTCAATGGTTTTATAAGTACACTTGGGTTAGTGGATGACAGATGTGTGGTAGAGCCATCTGCAGGGGACCTGGACAATCCCCCCAAGAAGTTCAGAGACTGCCTCTTCAAAGTGTGTCCCATGAACCGCTACTCTGCACAGAAACAGTTCTGGAAAGCCAAGCAGGCCAAGCATGAGAAGGACAAGATTGCTGATGTGGTGCTACTTCAGAAACTACAGCATGCCTCTAATCTGGAGCAAAAACAGAACGAGACCGAAAACAAGAAGGTCCATGGCGATGTAGTAAAATATGGCACTGTCATTCAGCTGCTGCATATGAAGAGTAATAAATACCTGACTGTGAATAAGCGTCTGCCTGCCCTGCTGGAGAAGAACGCCATGCGGGTCACCCTGGACGGGACGGGGAATGAGGGCTCCTGGGTGTTCATCCAACCCTTCTGGAAGCTAAGGGCCAACGGAGACAATGTAGTGGTGGGAGATAAGGTGATCCTGAACCCAGTGAATGCAGGCCAGCCCCTACACGCCAGCAACTATGAGCTGTCCGACCACACTGGATGCAAAGAGGTGAACTCTGTGAACAGCAACACTAGCTGGAAGATCAACCTGTTCATGATGTTCAGTGACCATAAGGATGAGGTCTTGAAAGGAGGGGATGTGGTGCGGTTGTTCCATGCGGAGCAAGAGAAGTTCCTGACCTGTGACGAGTACAAGGTCAAGCTGCATGTGTTCCTCCGTACCACCTTGCGCCAGTCTGCTACCTCTGCCACCAGCTCCAATGCCCTGTGGGAAGTGGAgGTGGTACATCATGATCCGTGTCGAGGAGGGGCTGGACACTGGAACACTCTCTATCGTTTTAAACACCTTGCCACAGGGAGTTACCTGGCAGCTGAGGAAAATCCGGGTTACAAAGGTGACGGCGTTGAAATCCAGACGTCGGTGATCGACGATACGCAGGACAGTAGAAGAAAACTGAAGATGTTGGGCGAGAGGATCAAGTACAAGCTGTCGGCTATGCCACATGGGAATGACATTGCCTCTTTGTTTGAGCTAGACCCCACAACTCTGCAGAAAACAGACTCCTTTGTGCCAAGGAATTCGTATGTGCGCCTCAGACACCTATGCACCAACACGTGGATCCAGAGTACCAACGTGCCCATAGATATAGATGAGGAGAGACCTATTAGACTCATGCTGGGCACCTGTCCTACCAAAGAGGATAAGGAAGCCTTTGCCATCGTGTCAGTGCCAGTGATGGAGATCCGGGACCTGGACTTTGCCAACGATGCCAGTTTCATGTTGAGCACCGTAGTGGACAGGTTTAACGAGGGATTTATCAGCCCCAATGACAGAAGgtttgCCATTAAGCTGCTAGAGGATCTGGTGTTCTTTGTGGTGGACACGCCCAACAGCGGTCAGGTTGTGCTAGATGTGGTGATGACCAAGGTCaaccgagagagacagaaactCATGAGGGAACAAAACATCCTCAAACAGATCTTTGGGATCCTGAAGGCCCCGTTCAAGGATAAAGGGGCAGAAGGCCCACTGCTGCGATTGGAGGAGCTGTCAGACCAGAAGAATTTCCCTTACCAGTACATGTTTCGCCTCTGTTACCGGGTGCTGCGACATTCACAGCAGGACTACCGCAAGAACCAGGAGCACATAGCCAAGCAGTTTGGGTTGATGCAGTCTCAGATTGGCTATGACATCCTGGCTGAGGACACCATCACTGCCCTGCTGCACAACAACCGCAAGCTGCTGGAGAAACACATCACTAAGAAGGAGGTGGAGACCTTCGTTAGCCTGGTCCGCAAGAACAGGGAAcccagGTTTCTGGACTACTTGTCAGATCTGTGTGTGTCCAACAACGTGGCCATTTCTGTAACTCAGGAGTTGATCTGTAAGTGTGTGCTGGATCCCAGGAACCAAGACATTCTCATCAAGACCGAACGGCGCGTGCCCAAAGAGATGCCCCATGCCACTGAATTCATGGGCATGGAGGAGTATGCTGACGATGATGAGGTGTGGCTGGTCTGGACTGACAAGACCAATGAGAAGCAAGAGAAGGGCATCAGACAACTAGCCCAGGAGGCCAGACAGGGGAACGCCCATGACGAGAACGTGCTCAGATACTATAGGTACCAGCTGAAGCTGTATGCTCGGATATGTCTGGACCGCCAGTACCTGGCCATAGGTGAGATCTCTAAGCAGCTGGATGTGGAACTCATCTTCCTGTGTATGATGGACGAGACGCTGCCCTTTGACCTCAGAGCCTCCTTCTGCAGACTCATGCTGCACACGCACGTCGACCGAGACCCTCAGGAGCTGGTGACCCCTGTCAAGTTTGCACGTCTGTGGACAGAGATCCCAACCTCCATCACAATTAAAGATTATGATTCCAACATGGATGACTTGCGGGACAATAAGAAGAACAAGTTTGCCAACACCATGGTGTTCATGGAGGAGTACCTCAACAACGTCCTCAATGACGACCTGCCTTTCGCTGACGAGGAGAAGAACAAACTCACCTATGAGGTGGTGAGCCTGGCCAGACACCTCATCTACTTTGGCTTCTACAGTTTCTTTGAGCTGCTGAGGTTGACACGCACTCTTCTGGGAATCATTGACTGTATTCCCAACCCTTCCCTTCACCCTGTGCTACAGGACGATGGCAGTGGAAAGAACATGAAGCGTTCCATCCATGGCGTGGGTCAGATGATGTCCACCATGGTACTGACCAGGAAACAGTCCATGTTTGGAGGTCCAGGGAGGAGTGTTTCCATTATAGAAGGACCGAACCGCAGCAAGGACAGCATCGGCAAACAGGACATCACCGTCATGGACACCAAGTTGAAAATACTGGAAATCCTGCAGTTTATCCTGAATGTCCGCCTGGACTACCGGCTCTCCTTCCTGCTGTCTGTCTTCAAGAAAGAGTTTGTTGATGTTTATCCCATGGCAGATGCCGATGCTACAACATCAATGGAGCAAGCAGCCACCATCAACCTGCAGCACATAGGAGATCAGGCGGAGGCCATGTTTGGTGTGGGGAAGGGGAACAGCATACTAGAGGTGGATGATGAGGGAGGTCGAATGTTCTTGAGGGTGTTGATCCACCTCACCATGCATGATTACCCTCCACTGGTGTCTGGGGCCCTCCAGCTGCTCTTCAAGCACTTCAGCCAGAGACAGGAGGTGCTGCACACCTTTAAACAGGTCCAGTTGTTGATCTCGGGGCAGGATGTTGATAACTACAAGCTGATAAAGAGTGACCTTGACCTTCTCCGCACCATGGTGGAGAAGTCTGAGCTCTGGGTGGACAAGAAGAGCGGctctggaggaggggaggggaagaaagacaaaAATGAAAATGTAGAGATGGACTTAGAGGATGTGACCCTGAAGAAAGAGCATTCGGATAAGAGCAATGAGAACTACCAGAAAGTCAGAGAGATCATGGAGCGTCTGAATAAGATGTGCAGCACAGGGGTGTGGAAAAAGCAGCAGAGGCTCCTGAAGAACATGGGAGCCCACAAAGTGATGCTGGACCTGCTGCAGGTGTCATATGATCAGCATGACACCAAGATGCAAGGGATCATCAGGTGCACTCACCTGTTCCTGCAGAAGTTCTGCATGGGGAACCTGGAGAACCAGGTGCTGCTTCATAAGAACCTCAGCCTCTTCCTGAACCCAGGActcatgGAGGCTGAGACGGTTCAGCACATCTTCAGTAATAACTACCAACTGTGTACAGAGATCAGTGAGAACGTGCTGCAGCACTTCGTCCACTGCCTGGCCACTCACGGACGCCACGTCCAGTACCTCAACTTCCTGCACACCATCATCAAGGCTGAGGGGAAATATGTGAAGAAGTGTCAGGACATGATCATGACTGAGTTAACCAACGCCGGTGAGGACGTGGTGGTGTTTTATAATGACAAGGCGTCATTTTCCACCATGCTGGAGCTGATGGCAGAGTCCAGGGAGGGGGTTCAGGAGCACAGCCCCCTGCGCTACCACATCTCTCTGGTGGAGCTGCTATCTGCCTGCGCTGAGGGCAAGAACGTTTACACAGAGATCAAATGTACCTCGCTGCTGCCCCTAGAGGACGTGGTGAGAGTGGTCACACACGAGGATTGCATCACAGAGgtGAAGGTTGCCTATGTGAACTTTGTGAATCACTGCTACGTAGACACAGAGGTAGAGATGAAGGAGATTTACACCAGCAACCACATCTGGAAACTGTTTGAGGACTTCATCGTGGACATGGCCAGGGTGTGTAACAAGAGAGAGAAGCGTCTGACTGACCCAATCCTGGAGAAGTACATCATCAACGTGGTGTTTGACACCATCAATGCCTTCTTCAGCTCCCCCTTCTCTGAAAACAGCACCTCTCTACAGACCCACCACACCACAGTAACGCAGCTGCTCCAGTCTAGCATGCGTCTGCTGGAATGTCCCTGGCTGCAGCAGCAACACAGAGGCCTGGTGGAGACCTGCATCCGTACCCTGGCTatgacagCGAAGAACCGCTCCATATCCCTGCCCCTGGACCTGGAGTCTCAGATCACCACCATGCTGAGCAGCAGTTCCCTCAACTCTCTGTCCCGCTCCAACCCCAACTACAAGAGCTCCACCCGCTCCAGCCGCCCCTCCGCCCCCAACAACCCCTGGGACTACAAGAACATCATTGAGAAGCTGCAGGACATCATCGGGACTCTGGAGCAGCGTCTGAAGCCGCTGTTGAACGCAGAGCTGTCTGTTCTGGTGGATGTCCTGCAGCAGCCTGAACTCCTCTTCCTGGAGGGGACGGATGCACGGCAACGCTGCGAATCAGGAGGCTTCATCTCAAAACTGATTCAGCACACTAAAGCCCTGATGAACTCCGACGAGAAGCTCTGTATCAAGGTTCTGAGGATTCTGCAGGAGATGCTCATACGCACACTGGACTTTAACGAGAAGGGGATTGCACTGAGGAAGGTGCTGCTACAGAACTACCTGTTCACCAACAAGAAGAACAACAAGGCAGAGCTGGTTGAACTTGGAGCAACAGGTGCTGAGCAGGAAAGGGACTGGGTGGCTGTAGCTGCTGTTCAGTGTCATCTGGACAGGGAGGGTGGGACTAAGCTCTTCACCGACCTCATAATGAGTACCAAGAACAACAAGATATTCCAGGAGAGCATCCAGATGGCCATATGTCTGATGGAGGGGGGcaacacagagatacagAACTCCTTCTACAAGCTGATGATGGGGGACAACAAGTCAGAGAAATTCTTCAAGGTCCTCCACGACCGGATGATAAACGCTCAGATGGACATCAAGGCCAACGTATCAGTCAGCGTGGGAGAGATGACTAACAAAGACCTTCAGACTGGCTCTGATGGGTCGGTTCTACCTGGCTCCGTTGTCCCGGCCTCTGAGTCTGATCagcaagagacagagatgggCCCTGCAGTTATCATCATGAAACCCATCCTACGCTTCCTCCAGCTGCTCTGTGAGAATCACAACCAGGACCTACAGAACTTCCTGCGCTGCCAGAACAACaagaccaactacaacctggtGTGTGAGACACTGCAGTTTCTGGACGTCATGTGTGGCAGCACCACAGGAGGCCTGGGCCTGCTGGGCCTCTACATTAACGAGAGCAACGTGGTCCTCATCACCCAGACCCTGGAGACGCTCACAGAGTACTGCCAGGGCCCCTGCCACGAGAACCAGACCTGTATAGTGGCCCATGAGTCCAACGGCATCGACATCATCACAGCCCTCATACTGAATGACATCAGTCCTCTGTGTTGTTACCGCATGGAGATGGTGCTGCAGCTCAAGGACAACGCCTCCAAGCTGCTGCTGGCTCTGATGGAGAGTCGCCATGACAACGAGAATGCAGAGAGGATACTGTTTAACCTCCGACCTCGGGAACTGGTAGAGGTGATAAAGAAAGCCTATCAGCAGGAGAGTGAGTGTGAAGTTGGAGTGGTGTCACCTCAAGAGGTCGGCCACAACATTTACATCCTGGCACTTCAGCTGGCGAGGCACAATAAGATCCTGCTCAATCTGCTGAAACCTGCAAAGAGGACCGAAGCAGGAGAGGAGGGTATATCCTCTATGCTGAACCTGAACAACAGACCTCTCTCTCAGATGTTGAAATCTACAGTGCCGGTGGAGATCGAGGAGCAGGACCCACTGGAGTTCTATGACCAACACACTTCACAGATAGAGATTGTGCGTGAGGACCGCAGCATGGAGCAGATCGTGTTCCCCATTCATCCCATCTGTGAGTTCCTGATGGAGGAGTCCAAGTTCCGTGTGTTCAACACCACTGAGCAGGACGAGCAGGGCAGCAAGGTCACACACTTCTTCCAACAGGCCTCCTTCCTCCACAACGAGATGGAGTGGCAGAAGAAGCTTCGCAGTATGCCGGTGCTGTTTTGGTTCTCTCGCAGGATGAGCACCTGGGGCAGCATCTCCTTTAACCtggccgtcttcatcaacctcaTCATCGCGTTTTTCTACCCCTACGACTCAGGCCAAGGTGCGATAGACGACTCAATGCTGTCCATGCTGTTCTGGGGCTTCCTGGGTCTGTCTGTCATGGGAATGTTCTCCCAGGGTTACGGCCTCAGGCCCTTCACCGTGGCCCTTATACTGCGCTCCATCTACCACTTTGGCATCGGTCCCACTCTCATCCTACTGGGAACCCTCAATCTGATAAATAAGATAGTGTTTGTGGTGAGCTTTGTGGGCAACAACGGGACATTTATCATGGGCTACCGTGCGATGGTGATGGACGTGGAGTTCCTGTATCACCTGGCCTACGTTCTGACCAGCACCCTGGGCCTCTGTGTCCACGAGCTGTTCTACAGCTTCCTGctgtttgATCTGATCTACCGAGAGGAGACGCTGTTCAACGTGATAAAGAGTGTGACCCGGAATGGGCGCTCCATCCTGCTCACTGCCCTGCTGGCCATCATCCTGGTCTACCTGTTCTCCATCGTGGGCTTCCTCTGCCTCAAGAATGACTTCATCATGGAGGTGGACCCACTGCCTCAGATAACCTCAGGGCGACATGGCAATGAGGAGGCATCCCAAGACTTCCTCAACACCTGCAGTAGAGATGGAGTCAGCTGCACTGCCAAGGCAGGACTCCCTGCTGAACCTGAGGCAGAGGAGAACAATTCGGAGCGGGCCTGTGACACTCTGCTCATGTGCATCGTCACCGTGCTGAACCACGGCTTGAGGAACGGTGGCGGGGTGGGAGACGTGCTACGCAGGCCCTCCAAAAACGAGCCACTGTTCCCAGCCCGCGTCATCTACGATCTCCTCTTCTACTTCATTGTCATCATCATCGTACTCAACTTGATCTTTGGTGTCATCATCGACACCTTCGCTGACTTGCGTAGTGAGAAACAGAAGAAAGAGGAGGTCCTCAAGACCACCTGCTTCATCTGTGGTCTGGAGAGGGACAAGTTTGACAATAAAACGGTGTCTTTTGAGGAGCACATAAAGTTGGAACACAACATATGGAACTACCTGTATTTCATCGTGCTCGTTCGCGAGAAGAACAAGACGGACTACACTGGACCAGAGAGTTATGTGGCCCTCATGATAAAGAGTAAGAACCTGGACTGGTTCCCCCGGATGCAGGCCATGTCCCTTGTGGTGACGGATGGAGACGCTGACCAGAACGAGATGAGGAACCTGCAGGACAGACTGACGTCCACTATGAACGTGGTCAGCCAACTCACAGGACAGCTAACAGAGCTCAAAGAGCAGATGACGGATCAGAGGAAGAGGCGGCAGCGGATGGGCTTTGTGGATGTCCAGTCAGGAGGAGGAGCTGGTGCTGCTAGCATGTCCCCCAGTGTTGCTGGAGGAAACCATCCGATGTCCAACAAACCCTGATGGATGTCCCGTCTTACTGTGCCACCACGCTTTGCCAAAAGACTGAGTCCACTAAGCCTATCGATACTATCCAAGATCAGCCATCAATCACATATTAAACAAAAATGTTTTAGTTGTGACTGACGCTGACAGGACTGAGTTACTGAGGTTGGGTTCTTTGTAATTCCCCTTAAAAGGGTTTCAACGCTTCCAGTAATGTCTGGAGAAAGAAAGAACATGATCAATCTCTGTTCTTGGTCCATGCAATCAGAGCAATTGATTAATGGCATTGCATTGTCGCAAACACACCTCAGATGACAACATTGGAAAGTGATACTACGGCAAAGCAGGAAGCAACACGTCCATCCATTATATTAGAAATAGAGTAACGATGTACAGATTACTACAGTAGGTCCATGACTAGCACCAAATGTTTGTCTGAAGCACGCAAAGATTTGGTTTGGAATACGTCTACTTGTCAATGTCTCCATTGTATTGGCCCCTCTTAGAGAAATGGAAACTTGAATGTTATCTTCTGAAAGCACATCAGTAAAATGTCTTTGATTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1603448 lncRNA downstream 63106 68216018 ~ 68216248 (-) True G1404061
TU1603443 lncRNA downstream 65248 68213291 ~ 68214106 (-) False G1404059
TU1603445 lncRNA downstream 65248 68213291 ~ 68214106 (-) False G1404059
TU1603446 lncRNA downstream 65248 68213291 ~ 68214106 (-) True G1404059
TU1603418 lncRNA downstream 89092 68190025 ~ 68190262 (-) True G1404035
TU1603854 lncRNA upstream 22439 68359373 ~ 68359652 (-) True G1404385
TU1603782 lncRNA upstream 32049 68368983 ~ 68369804 (-) True G1404321
TU1603869 lncRNA upstream 61185 68398119 ~ 68398401 (-) True G1404399
TU1603891 lncRNA upstream 97063 68433997 ~ 68434336 (-) True G1404418
TU1603867 lncRNA upstream 107401 68444335 ~ 68444743 (-) True LOC110491167
XR_005036608.1 mRNA downstream 7207 68265437 ~ 68272147 (-) False LOC110492615
XM_021567043.2 mRNA downstream 7207 68265441 ~ 68272147 (-) True LOC110492615
XM_036947643.1 mRNA downstream 13993 68249045 ~ 68265361 (-) True LOC110492616
XM_036947641.1 mRNA downstream 14009 68249045 ~ 68265345 (-) False LOC110492616
NM_001124722.1 mRNA downstream 94935 68183225 ~ 68184419 (-) True id1
XM_021567048.2 mRNA upstream 26240 68363174 ~ 68367397 (-) True LOC110492621
XM_036947635.1 mRNA upstream 33061 68369995 ~ 68378994 (-) False LOC110491166
XM_036947636.1 mRNA upstream 33061 68369995 ~ 68378994 (-) False LOC110491166
XM_036947637.1 mRNA upstream 33061 68369995 ~ 68381432 (-) False LOC110491166
XM_036947633.1 mRNA upstream 33061 68369995 ~ 68383907 (-) False LOC110491166
TU1602806 other downstream 835175 67443421 ~ 67444179 (-) True G1403498
TU1601943 other downstream 1784687 66484901 ~ 66494667 (-) False G1402707
TU1601912 other downstream 1853032 66425551 ~ 66426322 (-) False G1402686
TU1601915 other downstream 1853032 66425551 ~ 66426322 (-) True G1402686
TU1600365 other downstream 2524744 65720507 ~ 65754610 (-) True LOC110492562
TU1604092 other upstream 454255 68791189 ~ 68795025 (-) True LOC118939478
TU1604570 other upstream 866352 69203286 ~ 69207158 (-) True G1404974
TU1604630 other upstream 940893 69277827 ~ 69280359 (-) True G1405016
TU1604821 other upstream 1180821 69517755 ~ 69518113 (-) True G1405172
TU1605761 other upstream 1741723 70078657 ~ 70095541 (-) True G1405917

Expression Profile