RNA id: XM_021564513.2


Basic Information

Item Value
RNA id XM_021564513.2
length 5538
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC110491164
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 68348773 ~ 68357169 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTCAAAGGGGTCCAGTCACCCATGAATGAGCAGGCAACGGTACTTGTTAACAGACTCACAGACCTGCCTATGGGACTGCAGCCACAGGACGCAGAGAGAGACAAGTTCCCCAAGCTTCAGCATCCCACCACAGATTGGGCAACTTCTTCTTCTCTACTAAATTAACTTCTGCTGAGGGGGCCTCATTTTGACACCGTCTCCTGCAGTGATCAAAGCTGGGAAGTTCTGGAATTTAGAAGAAAAGCTACTTTTCAGGCTACTGCTCTCAAGATGAATCCCTCTATTTCACTGGTGGTACTATTGACTGTGTGGGCTTCCGATGCGAAAAAATTTCCACAGACAAACAGTGCATCTCTTGAAAAGGATATGTTAAATCTCGACATTCAAGTCATTCAAAGCCATGGTTATGACAATGAGGATGTGAAAGGACTGGAATGGGACAAGCACCACAAGAGAGCACCGCGGGGTGCAGACGACGAGGACACAGGCGCAGGTGAACCTCAGTCTACCTTCTCACGGTCTTATGAGAACGAGTTCACCTCACCCAGAGCTACCCAGTTCTCTAGCTCAACCCTGGAAACTGGGGCCAACACAGACTCAACTCTGGAAACTGGGGCCAACACAGACTCAACCCTGGAAACTGGGGCCAACACAGACTCAACCCTGGAAACTGGGGCCAACACAGACTCAACCCTGGAAACTGAGGCCAACACAGCCTCAACCCTGGAAACTGGGGCCAACACAGACTCAACCCTGGAAACTGGGGCCAACACAGACTCAACCCTGGACACTGGGGCCAACACAGACTCAACCCTGGACACTGGGGCCAACACAGACTCAACCCTGGATACTGGGGCCAACACAGACTCAAATCTGAACACTAGGGCCAACACAGACTCAAGCCTGGACACTGGGGCCAACACAGACTCAACCCTGGACACTAGGGCCACTGGGGCCAACACAGACGTGGATCAGGGCAACAGCAGCACTACAGGAAGGTGGATCACCAACATCCACAACCCTCTGTACCCAGTGACTGACAGTTCTTACACTGCCTACGCTGTCATGTTCCTGTCcctggtggtgttctctgtggGGATTATAGGGAACCTGGCTGTGATGTGCATCGTCTGGCACAACTACTACATGAGGAGTACCTGGAACTACATCCTGGCCAGCCTGGCTTTTTGGGACTTCCTGGTGCTCTGCTTCTGTTTACCTGTGGTGGTCTTCAATGAGCTCACCAATAAGAGGCTGCTGGGGGACATCTCATGCAGAGCGGTACCATATATGGAGGTGACCTCCCTAGGGGTGACATCCTTCAGCCTGTGTGCCCTGGGTATAGACCGCTTCAACTCTACCATCTGCTCCCAGCCCAAAATCCGTCGAGTGGAGAGCTGCCAGTCCATCCTGGCCAAGCTGCTGGTAATATGGCTGGGCTCCATGGTACTGGCGGCACCAGAGCTGCTCCTGTGGCAGCTCAGCCAGGCAGTGTCTCCAGGCACAGGGGCCGTGGTGGACTCCTGCACCATGAACCCCACCTCCAACCTCCCCGAGTCCATCTACGCCCTGGTCATCAACTACCACGAGTACCGCATGTGGTGGTACTTTGGTTGCTACTTCTGCCTGCCCGTGGTCTTCACCCTGCTGTGCCAGTTGGCCACCTGCCACGTGTCCCATGACGGTATCCCCCGGCGCCTGGAGGAAGGTTCCCTCTCCAAGAAGCAGAAGATGCAACACAGTCAACAGGTGGAGCGCCAGCTCAACTGCACCGTGATGGCTCTGGCCGTGGTCTACGGCGTCTGCGCCCTGCCGGAGAACGTGTGCAACATCGTCCTGGCTTACACCGCCATGCCCATCTCTGACGACACCGCCACCCTGCTGGCCCTCATCAACCAGTTCTCCCTGTTCTTCAAGTCGTCGGTGACGCCGGTGCTGCTGCTGTGCCTCTGTAAGTCTCtgagtcaggccttcatggactgctgctgctgctgctgtgagGAGTGCCAACCCAGTGGCTCCCATTCCCCTGGCACCGAGGCCAAACTCAAGAGCACCAACGAGATGTCCTCCTCCATCTTCTTTGACAAAGCCAAGGACAGCTCCACCGTCCTGTCGATCAGCGGGTCCAGCTGAACTGACCTCTCCTGCTTTCTTTCCTTTCCATCGCCTAAACTGGTTAGATGTGGTAACAAAGCAACTCACCTTTCAGCAGTGGACATTCCAACCTCAACCATAGACACACCTTTTTGTTTTCCAGTGCCAGCGTCACCTTCTCTGTAGCCTTAATGTCTGTAATGTCTCTCCTTTTGATGTTCTCTCCAAATAGATACAACACCCCATCCAGTTTTAAGGTGGTTCATTTGACAGGAAGTTCAGACATTGACTAAGTGCAGACTAGGGGGGGctggagagaagaaggagaagagctCCATTTAATATCCTTGTAGAAGTGTCACCCCAATGTGTGTATTTTAAGGATTATTAGGTCAAAAACAAACAGAGTATTATGTTAGATTACTATACTAGGGTTGACTAACAGCCCCAGAGTGTCCCGGCACTGAGATCATTATTTCTTGATGTCACAACTATTAACATATCTGTAATATGATGTGTGTTGGCTCTTTAGTCGACACAGATAAGTTTGCCTTGTCATTTTattcatgccccccccccccccccccccccaattatcGACACAGCTATTTCATCTTTAGCCGTCCCATGTCATTGTATCAATTATTGTTTTGAGTTATATTAATAATCAACAGGGATGGTTTAGACATAGTATTTTCCATCAAATCAAAGTGCTGTGAATAATGCAAAATTATTTTACCAGATAATCATGAGAAGTCACTGTACAGAGGTCAAGGTTATAAACTGGTTATAAGAAGGTTAGGAAAGAAGTCAGACATCATTTTATGAATAAGAGACACAGCTGTAGTTGTGTTTAATTTATCCAATAAAGGTTTGTAATTTATCAGCGCTAGTCATTTTTCTCACGGAGAGATTTCATAAATGTTAGTTTTAAAAAAATTGCTCAACCAGATGAAGGGATTTTGGGTGATTTGTGCTTGATGCGCATCCCATTGACCATCTGAAACTCAATAATGGGGTCCTCTCTCTGACCTGGAACATATTTCTCCTCTCACTGATTCAGGCTTTGGACAGCAGCAGAGCTCCTCTCATAAGGGTGTCATTGTTCTCCAGGGGCCAGTGGAAGCCTCCACTCTGAGGCCCTGGGAGTGGAACTACAGTTGAGTTGCCAGGTTACCGTCCCAAAATTCACGGGTATTGTAGACGGGCCAAAACCGGACAGGCCTTCCATCGTTTTCTCACCCCTGTCTGGTGCTCCAGTCCAAATGAACACGTGGCACTACTGCATGTTCTCTCATGTTGTCGTGAAGGTTTGAAAGAAAtatatgtgttttttttatacTTAAAATGGAGATGGACGTTGGCTTGGGGATGTGAGAAGTTTCCATTGTGATGGACTAGGTTCAATCAGAgaacaccaccacagcacagaCACCAGAATTATGTAATGCGTTGTTTCCAACATACAATGAAACTCAAGCCAACCTGATTGGACAGCATATCAAAAGATCACCAGTAAGCCAATAGAGGGCAAtagtaatggcgtctttttgtaggTATTAACAAGAGGCTAACTTCACCATGGCTTGTTGGCTAAAGCCTATGGGGATCAACACTGTAAATAAGGTCTGAGGAGATCTTATACTGTACGTTTTGCtctatgagataatcttcatcagctaaccAGTGTCCATTTTCAGGTTCCTATGCCTCTGCTGCAGTTAGTTATTTAACTTTAAGTTAGTAATTATTGTAACCCTTACGAAAAAAGATTGTAATTATTTTAACCCTTACGAAAAAAGATTGTAGTTATTTTAACCCTTACGAAAAAAGATTGAAATGATTTTATCCCTTACGAAAAAAAGATTGTAATTATTTCAACCCTTACGAAAAAAGATTGTAATTATTTTAACCCTTACGAAAAAAGATTGTAATTATTTCAACCCTTACGAAAAAAGATTGTAATTATTTTAACCCTTACGAAAAAAGATTGTAATTATTTTAACTCTTATGAAAAAATATTGAAATTATTTTAGCCCTTACGAAAAAAGATTGTAATTATTTTAACCCTTATGAAAAAAGATTGTAATTATTTCAACCCTTACGAAAAAAAGATTGTAATTATTTTAACCCTCACGAAAAAAGATTGTAATTATTTTAACTCTTATGAAAAAAGATTGAAATTATTTTAGCCCTTACGAAAAAAGATTGTAATTATTTTAACCCTTACGAAAAAAGATTGGAATTATTTTAACCCTTACGAAAAAAGATTGGAATTATTTTAACGAAAAAAGATTGCTGCAAATAGCGTGTCCAAAATAACACCTTTTTTTACGAcagtaattttgcagtgtaactgcagtgTAACTGCAGTGTAACTGCAGTGTAACTGCAGTGTAACAGTGCACTGTACTGTAAATGCAGTTCAACTTTTGCAAGGGCACCTTTTGTcaattttgaagcatttatgtaatcaAAACAAGAACATAGAGTGTTCATCATTGATAAAGCTGATCTATTCTGACTGGTATTATCTCATAAAACAAACTGTATAAGATCTCCTAATGCTATGTTAACttcagaccttattttcagcgtacagtggggcaaaaaagtatttagtcttgttttgtctgtcatagttgaagtgtgcctatgatgaagattatacaggcctctctcatctttttaagtgggagaacttgcacaattggtggctgactaaatacttttttgccccactgtatatcccaaAACCCCATTCTTTCCTCatttaattttcatcataggactGGCAAACAAACCAGAGGTAGAAAATGCTAACTCATGAATGTTTTTTTACCAATACCCAATTGTGATTAGCTTAGAAGTCAGTTTGAATGTACAGAGACAGTCTGGTTTCTCCATTAAATGATGCACTGATTGAAGGGTTTAGAGACAGAGGAGGTATTTTTTCCCACCGGGGGTGGTTGACCTCtttagagtctctctctctgggtcttgGAGCGTGTTCAGAGGCTGTCAGGGCCTGGGCAGATGGTGCTGGAGCCTCATTAGCAGTGAGCGGAGCTCCTCACCAGCTCCTGTGGACACTAATGACTGAACAGTGAACAGTCGCCTCTCTGTTTCATTAACGAAGCCACCGACACAAATCGACTTCCCCATGCCACAACATCCAGTGTCAGTCCGCTAACATACAAGGACTGAGGGAGTGGGATGGTTTTACGAAGCCCTGCAACAGGTAAACAAATGGAGAGAGTCATTCCAGGATGAAAAGTTGACTACATGATGACGCAGCAAGCTGGCGTTACAAGCAGCAATAGGACAGAAGTTATCAACCGTATGGATCAGATAATGTGCACTCATTTGATTGATACTGTAAGGGCATTTCTAAATGCTTGATGAAACAATGTTTTTGATTAAACTACTTTTTCCTGCA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04244 GPR37L1, ETBRLP2; prosaposin receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1603497 lncRNA upstream 3166 68345284 ~ 68345607 (+) True G1404093
TU1603500 lncRNA upstream 22675 68325676 ~ 68326098 (+) True G1404096
TU1603515 lncRNA upstream 58314 68290151 ~ 68290459 (+) True G1404106
TU1603514 lncRNA upstream 58687 68289515 ~ 68290086 (+) True G1404105
TU1603506 lncRNA upstream 64177 68281769 ~ 68284596 (+) True G1404098
TU1603563 lncRNA downstream 14411 68371580 ~ 68373836 (+) True G1404153
TU1603577 lncRNA downstream 48586 68405755 ~ 68406645 (+) True G1404166
TU1603582 lncRNA downstream 74944 68432113 ~ 68433787 (+) True G1404169
TU1603580 lncRNA downstream 77343 68434512 ~ 68443855 (+) True G1404168
TU1603596 lncRNA downstream 87210 68444379 ~ 68445658 (+) False G1404179
XR_005036609.1 mRNA upstream 3760 68301028 ~ 68345013 (+) False LOC110492620
XM_036947638.1 mRNA upstream 69484 68275495 ~ 68279289 (+) False LOC110492619
XM_021567047.2 mRNA upstream 69484 68275497 ~ 68279289 (+) True LOC110492619
XM_036947607.1 mRNA upstream 875080 67459278 ~ 67473693 (+) False LOC110492593
XM_036947640.1 mRNA downstream 39593 68396762 ~ 68405191 (+) False LOC110492622
XM_036947639.1 mRNA downstream 39594 68396763 ~ 68405191 (+) True LOC110492622
XM_036947632.1 mRNA downstream 64944 68422113 ~ 68431744 (+) True LOC110492623
XM_021567053.2 mRNA downstream 547641 68904810 ~ 68909231 (+) True LOC110492628
XM_021567054.2 mRNA downstream 555718 68912887 ~ 68915377 (+) False LOC110492629
TU1603494 other upstream 5278 68319655 ~ 68343495 (+) True LOC110492620
TU1603513 other upstream 58687 68289515 ~ 68290086 (+) False G1404105
TU1602989 other upstream 571282 67773556 ~ 67777491 (+) True G1403655
TU1602769 other upstream 609071 67738962 ~ 67739702 (+) True G1403463
TU1602718 other upstream 695326 67653068 ~ 67653447 (+) True G1403412
TU1603714 other downstream 324277 68681446 ~ 68681977 (+) True G1404281
TU1604245 other downstream 752545 69109714 ~ 69113350 (+) False G1404700
TU1604341 other downstream 888376 69245545 ~ 69253709 (+) True G1404785
TU1604359 other downstream 948527 69305696 ~ 69312263 (+) False fkbp1ab
TU1604360 other downstream 948527 69305696 ~ 69312263 (+) True fkbp1ab

Expression Profile